Pregenerated sensors for LHX8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096225Ensembl transcript IDs: ENSMUST00000177846.8, ENSMUST00000204171.3, ENSMUST00000204403.2, ENSMUST00000205251.3
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGCTGATCGGCTGTGAAGCTGGTCCGAGCTCTTTTGGCTGGCTTTaGATGATTGACGTCTTGCTCTGTGAGAAGGGCTCCTTCCACACT | + |
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Preference number: 1 (lower is better) Translates to: ELIGCEAGPSSFGWL*MIDVLLCEKGSFHT Trigger: AGTGTGGAAGGAGCCCTTCTCACAGAGCAAGACGTCAATCATCCAAAGCCAGCCAAAAGAGCTCGGACCAGCTTCACAGCCGATCAGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR CCA 90 bp | AACCTGGAGCTGATCGGCTGTGAAGCTGGTCCGAGCTCTTTTGGCTaGCTTTGGATGATTGACGTCTTGCTCTGTGAGAAGGGCTCCTTC | + |
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Preference number: 1 (lower is better) Translates to: NLELIGCEAGPSSFG*LWMIDVLLCEKGSF Trigger: GAAGGAGCCCTTCTCACAGAGCAAGACGTCAATCATCCAAAGCCAGCCAAAAGAGCTCGGACCAGCTTCACAGCCGATCAGCTCCAGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR-3UTR CCA 90 bp | GCATCGTCCCATCCTGGGGTACGTAGGCAGAATAAGCCATTTCTTCCAACATGGGATACACGTTGCCCTTaGCCCTGCGGACCCAGTCAG | + |
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Preference number: 2 (lower is better) Translates to: ASSHPGVRRQNKPFLPTWDTRCP*PCGPSQ Trigger: CTGACTGGGTCCGCAGGGCCAAGGGCAACGTGTATC...CCATGTTGGAAGAAATGGCTTATTCTGCCTACGTACCCCAGGATGGGACGATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR-3UTR CCA 90 bp | GGGGCTGAGGAAGAATGGTTGGGACTGACGTGTTTCTTATGGCGGGCCCTGCAGCCGAGCTCTTTTGGCTaGCTTTGGATGATTGACGTC | + |
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Preference number: 2 (lower is better) Translates to: GAEEEWLGLTCFLWRALQPSSFG*LWMIDV Trigger: GACGTCAATCATCCAAAGCCAGCCAAAAGAGCTCGG...CTGCAGGGCCCGCCATAAGAAACACGTCAGTCCCAACCATTCTTCCTCAGCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR-3UTR GCA 90 bp | AATCCCATTACCGTTCTCCACTTCTCTCTTCAGATTGTCCAGCATGCAGTCAAATCGAGTGGATGTGCCTaGCACAGCGGGAACAGCGGG | + |
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Preference number: 2 (lower is better) Translates to: NPITVLHFSLQIVQHAVKSSGCA*HSGNSG Trigger: CCCGCTGTTCCCGCTGTGGCAGGCACATCCACTCGA...TTTGACTGCATGCTGGACAATCTGAAGAGAGAAGTGGAGAACGGTAATGGGATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR CAA 90 bp | GAAGCTGGTCCGAGCTCTTTTGGCTGGCTTTGGATGATTGACGTCTaGCTCTGTGAGAAGGGCTCCTTCCACACTAATCCCATTACCGTT | + |
|
Preference number: 2 (lower is better) Translates to: EAGPSSFGWLWMIDV*LCEKGSFHTNPITV Trigger: AACGGTAATGGGATTAGTGTGGAAGGAGCCCTTCTCACAGAGCAAGACGTCAATCATCCAAAGCCAGCCAAAAGAGCTCGGACCAGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR-3UTR GCA 90 bp | AGTCAGCATCGTCCCATCCTGGGGTACGTAGGCAGAATAAGCCATTTCTTCCAAGTCCTGAGCGAACTGTaGTTGCATAACCTGGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: SQHRPILGYVGRISHFFQVLSEL*LHNLEL Trigger: CAGCTCCAGGTTATGCAAGCACAGTTCGCTCAGGAC...TTGGAAGAAATGGCTTATTCTGCCTACGTACCCCAGGATGGGACGATGCTGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR-3UTR CCA 90 bp | AATCCCATTACCGTTCTCCACTTCTCTCTTCAGATTGTCCAGCATGCAGTCAAAACCCAGTCAGTCGAGTaGATGTGCCTGCCACAGCGG | + |
|
Preference number: 2 (lower is better) Translates to: NPITVLHFSLQIVQHAVKTQSVE*MCLPQR Trigger: CCGCTGTGGCAGGCACATCCACTCGACTGACTGGGT...TTTGACTGCATGCTGGACAATCTGAAGAGAGAAGTGGAGAACGGTAATGGGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR-3UTR CCA 90 bp | CTAATCCCATTACCGTTCTCCACTTCTCTCTTCAGATTGTCCAGCATGCAGTCACGAACTCCTCTCCCGTaGACAGCTGCCTCTTGCAAG | + |
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Preference number: 2 (lower is better) Translates to: LIPLPFSTSLFRLSSMQSRTPLP*TAASCK Trigger: CTTGCAAGAGGCAGCTGTCCACGGGAGAGGAGTTCG...TGACTGCATGCTGGACAATCTGAAGAGAGAAGTGGAGAACGGTAATGGGATTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR-3UTR GCA 90 bp | GCATGCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAAGCACACGATCAGTCCTaGCTTTCAGGCAAAGTGCTC | + |
|
Preference number: 2 (lower is better) Translates to: ACYNGRAFSLSRKHWQNKAHDQS*LSGKVL Trigger: GAGCACTTTGCCTGAAAGGCAGGACTGATCGTGTGC...TTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGCATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| 3UTR CAA 90 bp | CCTTCCACACTAATCCCATTACCGTTCTCCACTTCTCTCTTCAGATaGTCCAGCATGCAGTCAAAGTGCACTCTACAGAGGACCTTCTCC | + |
|
Preference number: 2 (lower is better) Translates to: PSTLIPLPFSTSLFR*SSMQSKCTLQRTFS Trigger: GGAGAAGGTCCTCTGTAGAGTGCACTTTGACTGCATGCTGGACAATCTGAAGAGAGAAGTGGAGAACGGTAATGGGATTAGTGTGGAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR-3UTR GCA 90 bp | CAGCATCGTCCCATCCTGGGGTACGTAGGCAGAATAAGCCATTTCTTCCAACATAGCATGCAGTCAAAGTaGACTCTACAGAGGACCTTC | + |
|
Preference number: 2 (lower is better) Translates to: QHRPILGYVGRISHFFQHSMQSK*TLQRTF Trigger: GAAGGTCCTCTGTAGAGTGCACTTTGACTGCATGCT...ATGTTGGAAGAAATGGCTTATTCTGCCTACGTACCCCAGGATGGGACGATGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR-3UTR GCA 90 bp | GCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCTCAATAAAAGTGTCTTaGAGGCCAACTCTAGATACA | + |
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Preference number: 2 (lower is better) Translates to: ATTDVPSACPENTGKINFSIKVS*RPTLDT Trigger: TGTATCTAGAGTTGGCCTGCAAGACACTTTTATTGA...GAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| 3UTR-3UTR GCA 90 bp | CTTTTGGTGACAAATAAGTTAATAGACACACACTCGAGCCAACTATCTCCAGACTCAATAAAAGTGTCTTaGAGGCCAACTCTAGATACA | + |
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Preference number: 2 (lower is better) Translates to: LLVTNKLIDTHSSQLSPDSIKVS*RPTLDT Trigger: TGTATCTAGAGTTGGCCTGCAAGACACTTTTATTGA...GTCTGGAGATAGTTGGCTCGAGTGTGTGTCTATTAACTTATTTGTCACCAAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| 3UTR GCA 72 bp | CCCTTGGCCCTGCGGACCCAGTCAGTCGAGTGGATGTaGCTGCCACAGCGGGAACAGCGGGTCCCATACCGT | + |
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Preference number: 3 (lower is better) Translates to: PLALRTQSVEWM*LPQREQRVPYR Trigger: ACGGTATGGGACCCGCTGTTCCCGCTGTGGCAGGCACATCCACTCGACTGACTGGGTCCGCAGGGCCAAGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR CCA 72 bp | ACGTTGCCCTTGGCCCTGCGGACCCAGTCAGTCGAGTaGATGTGCCTGCCACAGCGGGAACAGCGGGTCCCA | + |
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Preference number: 3 (lower is better) Translates to: TLPLALRTQSVE*MCLPQREQRVP Trigger: TGGGACCCGCTGTTCCCGCTGTGGCAGGCACATCCACTCGACTGACTGGGTCCGCAGGGCCAAGGGCAACGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR TCA 72 bp | GCTGGAGTCCAGGAGTTGTTGGTGAGCATCCATGTATaGGTGCAGCGCAGTCAGCATCGTCCCATCCTGGGG | + |
|
Preference number: 3 (lower is better) Translates to: AGVQELLVSIHV*VQRSQHRPILG Trigger: CCCCAGGATGGGACGATGCTGACTGCGCTGCACTCATACATGGATGCTCACCAACAACTCCTGGACTCCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR CCA 72 bp | CTGATCGGCTGTGAAGCTGGTCCGAGCTCTTTTGGCTaGCTTTGGATGATTGACGTCTTGCTCTGTGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: LIGCEAGPSSFG*LWMIDVLLCEK Trigger: CTTCTCACAGAGCAAGACGTCAATCATCCAAAGCCAGCCAAAAGAGCTCGGACCAGCTTCACAGCCGATCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR-3UTR CAA 90 bp | CATAACCTGGAGCTGATCGGCTGTGAAGCTGGTCCGAGCTCTTTTGGCTGGCTTACTTCTCTCTTCAGATaGTCCAGCATGCAGTCAAAG | + |
|
Preference number: 3 (lower is better) Translates to: HNLELIGCEAGPSSFGWLTSLFR*SSMQSK Trigger: CTTTGACTGCATGCTGGACAATCTGAAGAGAGAAGT...AAGCCAGCCAAAAGAGCTCGGACCAGCTTCACAGCCGATCAGCTCCAGGTTATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| 3UTR GCA 72 bp | TACCGTTCTCCACTTCTCTCTTCAGATTGTCCAGCATaGAGTCAAAGTGCACTCTACAGAGGACCTTCTCCT | + |
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Preference number: 3 (lower is better) Translates to: YRSPLLSSDCPA*SQSALYRGPSP Trigger: AGGAGAAGGTCCTCTGTAGAGTGCACTTTGACTGCATGCTGGACAATCTGAAGAGAGAAGTGGAGAACGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| CDS-3UTR GCA 90 bp | GTTGCCCTTGGCCCTGCGGACCCAGTCAGTCGAGTGGATGTGCCTGCCACAGCGCCAGGCCGCAGCTGCTaGACACACACTTGCCTGGCG | + |
|
Preference number: 4 (lower is better) Translates to: VALGPADPVSRVDVPATAPGRSC*THTCLA Trigger: CGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGG...CGCTGTGGCAGGCACATCCACTCGACTGACTGGGTCCGCAGGGCCAAGGGCAAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| CDS-3UTR CCA 90 bp | GTTGCCCTTGGCCCTGCGGACCCAGTCAGTCGAGTGGATGTGCCTGCCACAGCGGCACACACACTTGCCTaGCGGGCACACGGAGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: VALGPADPVSRVDVPATAAHTLA*RAHGAR Trigger: TCGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGC...CGCTGTGGCAGGCACATCCACTCGACTGACTGGGTCCGCAGGGCCAAGGGCAAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| CDS-3UTR GCA 90 bp | TGCAGGCCAACTCTAGATACATACCTGGGCAGCGAGAGGATGTTCGAAATGCTTCTTCCCCAGCGCCTTTaGGGGTCCTCCCGGCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: CRPTLDTYLGSERMFEMLLPQRL*GSSRPP Trigger: TGGCGGCCGGGAGGACCCGCAAAGGCGCTGGGGAAG...AAGCATTTCGAACATCCTCTCGCTGCCCAGGTATGTATCTAGAGTTGGCCTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR CCA 90 bp | GCATCGTCCCATCCTGGGGTACGTAGGCAGAATAAGCCATTTCTTCCAACATGGCCCGAGGCCATGGACTaGGGCGAGGACGACGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: ASSHPGVRRQNKPFLPTWPEAMD*GEDDGE Trigger: TTCCCCGTCGTCCTCGCCCCAGTCCATGGCCTCGGG...CCATGTTGGAAGAAATGGCTTATTCTGCCTACGTACCCCAGGATGGGACGATGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| CDS-3UTR CCA 90 bp | GCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCCCCGAGGCCATGGACTaGGGCGAGGACGACGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: ATTDVPSACPENTGKINFPEAMD*GEDDGE Trigger: TTCCCCGTCGTCCTCGCCCCAGTCCATGGCCTCGGG...GAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR GCA 90 bp | GCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCCCAGGCCGCAGCTGCTaGACACACACTTGCCTGGCG | + |
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Preference number: 4 (lower is better) Translates to: ATTDVPSACPENTGKINFPGRSC*THTCLA Trigger: CGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGG...GAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR TCA 90 bp | TGCAGGCCAACTCTAGATACATACCTGGGCAGCGAGAGGATGTTCGAAATGCTTGGAGCTGATCGGCTGTaGAGCTGGTCCGAGCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: CRPTLDTYLGSERMFEMLGADRL*SWSELF Trigger: AAAGAGCTCGGACCAGCTTCACAGCCGATCAGCTCC...AAGCATTTCGAACATCCTCTCGCTGCCCAGGTATGTATCTAGAGTTGGCCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR CCA 90 bp | ACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTGCACACACACTTGCCTaGCGGGCACACGGAGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: TTDVPSACPENTGKINFSAHTLA*RAHGAR Trigger: TCGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGC...ACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| 3UTR CAA 72 bp | CCGAGCTCTTTTGGCTGGCTTTGGATGATTGACGTCTaGCTCTGTGAGAAGGGCTCCTTCCACACTAATCCC | + |
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Preference number: 4 (lower is better) Translates to: PSSFGWLWMIDV*LCEKGSFHTNP Trigger: GGGATTAGTGTGGAAGGAGCCCTTCTCACAGAGCAAGACGTCAATCATCCAAAGCCAGCCAAAAGAGCTCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| CDS-3UTR TCA 90 bp | CATAACCTGGAGCTGATCGGCTGTGAAGCTGGTCCGAGCTCTTTTGGCTGGCTTCGTTCTGCAGACACTTaGGGAGGTATTTGTCCACAA | + |
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Preference number: 4 (lower is better) Translates to: HNLELIGCEAGPSSFGWLRSADT*GGICPQ Trigger: TTGTGGACAAATACCTCCTCAAGTGTCTGCAGAACG...AAGCCAGCCAAAAGAGCTCGGACCAGCTTCACAGCCGATCAGCTCCAGGTTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
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| CDS-3UTR GCA 90 bp | CCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATTCACACTTCCCCAGCGCCTTTaGGGGTCCTCCCGGCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: PSACPENTGKINFSCKFTLPQRL*GSSRPP Trigger: TGGCGGCCGGGAGGACCCGCAAAGGCGCTGGGGAAG...TGTGAATTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR GCA 90 bp | TTTTGCACACGATCAGTCCTGCCTTTCAGGCAAAGTGCTCTTTTGGTGACAAATTCGAGTGGATGTGCCTaGCACAGCGGGAACAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: FCTRSVLPFRQSALLVTNSSGCA*HSGNSG Trigger: CCCGCTGTTCCCGCTGTGGCAGGCACATCCACTCGA...ATTTGTCACCAAAAGAGCACTTTGCCTGAAAGGCAGGACTGATCGTGTGCAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR CCA 90 bp | CTTTTGGTGACAAATAAGTTAATAGACACACACTCGAGCCAACTATCTCCAGACCCCGAGGCCATGGACTaGGGCGAGGACGACGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: LLVTNKLIDTHSSQLSPDPEAMD*GEDDGE Trigger: TTCCCCGTCGTCCTCGCCCCAGTCCATGGCCTCGGG...GTCTGGAGATAGTTGGCTCGAGTGTGTGTCTATTAACTTATTTGTCACCAAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR GCA 90 bp | CTTTTGGTGACAAATAAGTTAATAGACACACACTCGAGCCAACTATCTCCAGACCCAGGCCGCAGCTGCTaGACACACACTTGCCTGGCG | + |
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Preference number: 4 (lower is better) Translates to: LLVTNKLIDTHSSQLSPDPGRSC*THTCLA Trigger: CGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGG...GTCTGGAGATAGTTGGCTCGAGTGTGTGTCTATTAACTTATTTGTCACCAAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR GCA 90 bp | GCATGCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTCCCAGGGACGTTCTaGAGACACTGCAGGAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: ACYNGRAFSLSRKHWQNKFPGTF*RHCRRD Trigger: GTCTCTCCTGCAGTGTCTGCAGAACGTCCCTGGGAA...TTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGCATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR CCA 90 bp | TGCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTACCCAGTCAGTCGAGTaGATGTGCCTGCCACAGCGG | + |
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Preference number: 4 (lower is better) Translates to: CYNGRAFSLSRKHWQNKFTQSVE*MCLPQR Trigger: CCGCTGTGGCAGGCACATCCACTCGACTGACTGGGT...AAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR CCA 90 bp | TTTTGCACACGATCAGTCCTGCCTTTCAGGCAAAGTGCTCTTTTGGTGACAAATACCCAGTCAGTCGAGTaGATGTGCCTGCCACAGCGG | + |
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Preference number: 4 (lower is better) Translates to: FCTRSVLPFRQSALLVTNTQSVE*MCLPQR Trigger: CCGCTGTGGCAGGCACATCCACTCGACTGACTGGGT...ATTTGTCACCAAAAGAGCACTTTGCCTGAAAGGCAGGACTGATCGTGTGCAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR CCA 90 bp | GCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCCGAACTCCTCTCCCGTaGACAGCTGCCTCTTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: ATTDVPSACPENTGKINFRTPLP*TAASCK Trigger: CTTGCAAGAGGCAGCTGTCCACGGGAGAGGAGTTCG...GAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR TCA 90 bp | GGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAGGAGCTGATCGGCTGTaGAGCTGGTCCGAGCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: GRAFSLSRKHWQNKFQLQGADRL*SWSELF Trigger: AAAGAGCTCGGACCAGCTTCACAGCCGATCAGCTCC...TTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR GCA 90 bp | TTGCAGGCCAACTCTAGATACATACCTGGGCAGCGAGAGGATGTTCGAAATGCTTTTCTGGAGGGTCTGTaGATCTGGGTTGTTGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: LQANSRYIPGQREDVRNAFLEGL*IWVVVL Trigger: CAGGACAACAACCCAGATGCACAGACCCTCCAGAAA...AGCATTTCGAACATCCTCTCGCTGCCCAGGTATGTATCTAGAGTTGGCCTGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR CCA 90 bp | GACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAAGATACACGTTGCCCTTaGCCCTGCGGACCCAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: DVPSACPENTGKINFSCKDTRCP*PCGPSQ Trigger: CTGACTGGGTCCGCAGGGCCAAGGGCAACGTGTATC...TTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR CCA 90 bp | TTTTGCACACGATCAGTCCTGCCTTTCAGGCAAAGTGCTCTTTTGGTGACAAATCGAACTCCTCTCCCGTaGACAGCTGCCTCTTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: FCTRSVLPFRQSALLVTNRTPLP*TAASCK Trigger: CTTGCAAGAGGCAGCTGTCCACGGGAGAGGAGTTCG...ATTTGTCACCAAAAGAGCACTTTGCCTGAAAGGCAGGACTGATCGTGTGCAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| 3UTR CAA 72 bp | GTGTGCGCGGCATGCTACAACGGACGTGCCTTCAGCTaGTCCCGAAAACACTGGCAAAATAAATTTCAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: VCAACYNGRAFS*SRKHWQNKFQL Trigger: CAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGCATGCCGCGCACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR TCA 90 bp | TGTAAACTAGAGTGTTATTTACAGCTAGAACTCCAAGTGCAGGCACCCCGTGGGTTGGCTGGCTTTGGATaGTTGACGTCTTGCTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: CKLECYLQLELQVQAPRGLAGFG*LTSCSV Trigger: CACAGAGCAAGACGTCAATCATCCAAAGCCAGCCAA...CCCACGGGGTGCCTGCACTTGGAGTTCTAGCTGTAAATAACACTCTAGTTTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR TCA 90 bp | TTTTGCACACGATCAGTCCTGCCTTTCAGGCAAAGTGCTCTTTTGGTGACAAATCGGGCCCTGCAGTTCTaGAACCACACCTGTATGACA | + |
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Preference number: 4 (lower is better) Translates to: FCTRSVLPFRQSALLVTNRALQF*NHTCMT Trigger: TGTCATACAGGTGTGGTTTCAGAACTGCAGGGCCCG...ATTTGTCACCAAAAGAGCACTTTGCCTGAAAGGCAGGACTGATCGTGTGCAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
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| CDS-3UTR CCA 90 bp | ACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTCCATTTCTTCCAACATaGGTGGGGACAGCCTGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: TTDVPSACPENTGKINFSPFLPT*VGTAWR Trigger: CCTCCAGGCTGTCCCCACCCATGTTGGAAGAAATGG...ACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR GCA 90 bp | TGCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTACGTTCTGCAGACACTaGAGGAGAGACAGCGGACAT | + |
|
Preference number: 4 (lower is better) Translates to: CYNGRAFSLSRKHWQNKFTFCRH*RRDSGH Trigger: ATGTCCGCTGTCTCTCCTGCAGTGTCTGCAGAACGT...AAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR GCA 90 bp | AGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATTCACAGATACTCGAGTGGATGTGCCTaGCACAGCGGGAACAGCGGG | + |
|
Preference number: 4 (lower is better) Translates to: SLSRKHWQNKFQLQIHRYSSGCA*HSGNSG Trigger: CCCGCTGTTCCCGCTGTGGCAGGCACATCCACTCGA...GTATCTGTGAATTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CCA 90 bp | GACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAACCATTTCTTCCAACATaGGTGGGGACAGCCTGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: DVPSACPENTGKINFSCKPFLPT*VGTAWR Trigger: CCTCCAGGCTGTCCCCACCCATGTTGGAAGAAATGG...TTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR TCA 90 bp | TTTTGCACACGATCAGTCCTGCCTTTCAGGCAAAGTGCTCTTTTGGTGACAAATTTGGCTGGCTTTGGATaGTTGACGTCTTGCTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: FCTRSVLPFRQSALLVTNLAGFG*LTSCSV Trigger: CACAGAGCAAGACGTCAATCATCCAAAGCCAGCCAA...ATTTGTCACCAAAAGAGCACTTTGCCTGAAAGGCAGGACTGATCGTGTGCAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR GCA 90 bp | CTTTTGGTGACAAATAAGTTAATAGACACACACTCGAGCCAACTATCTCCAGACTTCCCAGGGACGTTCTaGAGACACTGCAGGAGAGAC | + |
|
Preference number: 4 (lower is better) Translates to: LLVTNKLIDTHSSQLSPDFPGTF*RHCRRD Trigger: GTCTCTCCTGCAGTGTCTGCAGAACGTCCCTGGGAA...GTCTGGAGATAGTTGGCTCGAGTGTGTGTCTATTAACTTATTTGTCACCAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR GCA 90 bp | GCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGCATGCAGTCAAAGTaGACTCTACAGAGGACCTTC | + |
|
Preference number: 4 (lower is better) Translates to: ATTDVPSACPENTGKINFSMQSK*TLQRTF Trigger: GAAGGTCCTCTGTAGAGTGCACTTTGACTGCATGCT...GAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR GCA 90 bp | TTTTGCACACGATCAGTCCTGCCTTTCAGGCAAAGTGCTCTTTTGGTGACAAATTTTCTGGAGGGTCTGTaGATCTGGGTTGTTGTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: FCTRSVLPFRQSALLVTNFLEGL*IWVVVL Trigger: CAGGACAACAACCCAGATGCACAGACCCTCCAGAAA...ATTTGTCACCAAAAGAGCACTTTGCCTGAAAGGCAGGACTGATCGTGTGCAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CCA 90 bp | AGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATTCACAGATACGATACACGTTGCCCTTaGCCCTGCGGACCCAGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: SLSRKHWQNKFQLQIHRYDTRCP*PCGPSQ Trigger: CTGACTGGGTCCGCAGGGCCAAGGGCAACGTGTATC...GTATCTGTGAATTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CCA 90 bp | TGCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCCGAGCTCTTTTGGCTaGCTTTGGATGATTGACGTC | + |
|
Preference number: 4 (lower is better) Translates to: CYNGRAFSLSRKHWQNKFPSSFG*LWMIDV Trigger: GACGTCAATCATCCAAAGCCAGCCAAAAGAGCTCGG...AAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| 3UTR CAA 72 bp | CTAATCCCATTACCGTTCTCCACTTCTCTCTTCAGATaGTCCAGCATGCAGTCAAAGTGCACTCTACAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LIPLPFSTSLFR*SSMQSKCTLQR Trigger: CCTCTGTAGAGTGCACTTTGACTGCATGCTGGACAATCTGAAGAGAGAAGTGGAGAACGGTAATGGGATTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
||
| CDS-3UTR GCA 90 bp | TTTTGCACACGATCAGTCCTGCCTTTCAGGCAAAGTGCTCTTTTGGTGACAAATAGCATGCAGTCAAAGTaGACTCTACAGAGGACCTTC | + |
|
Preference number: 4 (lower is better) Translates to: FCTRSVLPFRQSALLVTNSMQSK*TLQRTF Trigger: GAAGGTCCTCTGTAGAGTGCACTTTGACTGCATGCT...ATTTGTCACCAAAAGAGCACTTTGCCTGAAAGGCAGGACTGATCGTGTGCAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CCA 90 bp | CCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATTCACATGGGGTAACAAGGGCTaGAGTCCAGGAGTTGTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: PSACPENTGKINFSCKFTWGNKG*SPGVVG Trigger: ACCAACAACTCCTGGACTCCAGCCCTTGTTACCCCA...TGTGAATTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CCA 90 bp | GTGACAAATAAGTTAATAGACACACACTCGAGCCAACTATCTCCAGACAATACATGGGGTAACAAGGGCTaGAGTCCAGGAGTTGTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: VTNKLIDTHSSQLSPDNTWGNKG*SPGVVG Trigger: ACCAACAACTCCTGGACTCCAGCCCTTGTTACCCCA...TGTATTGTCTGGAGATAGTTGGCTCGAGTGTGTGTCTATTAACTTATTTGTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR GCA 90 bp | TGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATTCACAGATACAAGCACGTTCTGCAGACACTaGAGGAGAGACAGCGGACAT | + |
|
Preference number: 4 (lower is better) Translates to: CPENTGKINFSCKFTDTSTFCRH*RRDSGH Trigger: ATGTCCGCTGTCTCTCCTGCAGTGTCTGCAGAACGT...GCTTGTATCTGTGAATTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR GCA 90 bp | AGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATTCACAGATACGTCCTGAGCGAACTGTaGTTGCATAACCTGGAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SLSRKHWQNKFQLQIHRYVLSEL*LHNLEL Trigger: CAGCTCCAGGTTATGCAAGCACAGTTCGCTCAGGAC...GTATCTGTGAATTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CCA 90 bp | TACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTAGGTATGACTTATTaGCAGCTGGGTCATTGGATG | + |
|
Preference number: 4 (lower is better) Translates to: YNGRAFSLSRKHWQNKFQLGMTY*QLGHWM Trigger: CATCCAATGACCCAGCTGCCAATAAGTCATACCTAA...CTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205251.3 |
||
| CDS-3UTR CCA 90 bp | TGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATTCACAGATACAAGCCCGAGCTCTTTTGGCTaGCTTTGGATGATTGACGTC | + |
|
Preference number: 4 (lower is better) Translates to: CPENTGKINFSCKFTDTSPSSFG*LWMIDV Trigger: GACGTCAATCATCCAAAGCCAGCCAAAAGAGCTCGG...GCTTGTATCTGTGAATTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CCA 90 bp | CCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATTCACATCTTTTGGCTGGCTTTaGATGATTGACGTCTTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: PSACPENTGKINFSCKFTSFGWL*MIDVLL Trigger: GAGCAAGACGTCAATCATCCAAAGCCAGCCAAAAGA...TGTGAATTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CCA 90 bp | AGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATTCACAGATACTCTTTTGGCTGGCTTTaGATGATTGACGTCTTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: SLSRKHWQNKFQLQIHRYSFGWL*MIDVLL Trigger: GAGCAAGACGTCAATCATCCAAAGCCAGCCAAAAGA...GTATCTGTGAATTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR GCA 90 bp | TCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATTCACAGATACAAGCTTTCAGATTGTCCAGCATaGAGTCAAAGTGCACTCTAC | + |
|
Preference number: 4 (lower is better) Translates to: SRKHWQNKFQLQIHRYKLSDCPA*SQSALY Trigger: GTAGAGTGCACTTTGACTGCATGCTGGACAATCTGA...AAGCTTGTATCTGTGAATTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS GCA 90 bp | TCCTTCTTCCCCAGCGCCTTTGCGGGTCCTCCCGGCCGCCAGGGCTaGAGGCCGCCCGCACTCCTCCGACATGAGCCCGGGGCACTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: SFFPSAFAGPPGRQG*RPPALLRHEPGALL Trigger: GAGAAGTGCCCCGGGCTCATGTCGGAGGAGTGCGGGCGGCCTGCAGCCCTGGCGGCCGGGAGGACCCGCAAAGGCGCTGGGGAAGAAGGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177846.8 |
||
| CDS GCA 90 bp | GGTATTTGTCCACAATCTCCAGGCCGCAGCTGCTGCACACACACTTaGCTGGCGGGCACACGGAGCCCGAGGCCATGGACTGGGGCGAGG | + |
|
Preference number: 5 (lower is better) Translates to: GICPQSPGRSCCTHT*LAGTRSPRPWTGAR Trigger: CCTCGCCCCAGTCCATGGCCTCGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATTGTGGACAAATACC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000177846.8 ENSMUST00000204171.3 ENSMUST00000204403.2 ENSMUST00000205251.3 |
||
| CDS CCA 90 bp | TTTGTCCACAATCTCCAGGCCGCAGCTGCTGCACACACACTTGCCTaGCGGGCACACGGAGCCCGAGGCCATGGACTGGGGCGAGGACGA | + |
|
Preference number: 5 (lower is better) Translates to: FVHNLQAAAAAHTLA*RAHGARGHGLGRGR Trigger: TCGTCCTCGCCCCAGTCCATGGCCTCGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATTGTGGACAAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000177846.8 ENSMUST00000204171.3 ENSMUST00000204403.2 ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | TTGCAGGCCAACTCTAGATACATACCTGGGCAGCGAGAGGATGTTCGAAATGCTTCTTCCCCAGCGCCTTaGCGGGTCCTCCCGGCCGCC | + |
|
Preference number: 5 (lower is better) Translates to: LQANSRYIPGQREDVRNASSPAP*RVLPAA Trigger: GGCGGCCGGGAGGACCCGCAAAGGCGCTGGGGAAGA...AGCATTTCGAACATCCTCTCGCTGCCCAGGTATGTATCTAGAGTTGGCCTGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | CTCTTCAGATTGTCCAGCATGCAGTCAAAGTGCACTCTACAGAGGACCTTCTCCCTGCTGCACACACACTaGCCTGGCGGGCACACGGAG | + |
|
Preference number: 5 (lower is better) Translates to: LFRLSSMQSKCTLQRTFSLLHTH*PGGHTE Trigger: CTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAG...GGAGAAGGTCCTCTGTAGAGTGCACTTTGACTGCATGCTGGACAATCTGAAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
||
| CDS-3UTR CAA 90 bp | GACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATCTTCCCCAGCGCCTTaGCGGGTCCTCCCGGCCGCC | + |
|
Preference number: 5 (lower is better) Translates to: DVPSACPENTGKINFSCKSSPAP*RVLPAA Trigger: GGCGGCCGGGAGGACCCGCAAAGGCGCTGGGGAAGA...TTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | CCAGGTGATACACGTTGCCCTTGGCCCTGCGGACCCAGTCAGTCGAGTGGATGTACGTTCTGCAGACACTaGAGGAGGTATTTGTCCACA | + |
|
Preference number: 5 (lower is better) Translates to: PGDTRCPWPCGPSQSSGCTFCRH*RRYLST Trigger: TGTGGACAAATACCTCCTCAAGTGTCTGCAGAACGT...ACATCCACTCGACTGACTGGGTCCGCAGGGCCAAGGGCAACGTGTATCACCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204171.3 |
||
| CDS-3UTR CAA 90 bp | GCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCCTGCTGCACACACACTaGCCTGGCGGGCACACGGAG | + |
|
Preference number: 5 (lower is better) Translates to: ATTDVPSACPENTGKINFLLHTH*PGGHTE Trigger: CTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAG...GAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | GGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAACTGCTGCACACACACTaGCCTGGCGGGCACACGGAG | + |
|
Preference number: 5 (lower is better) Translates to: GRAFSLSRKHWQNKFQLQLLHTH*PGGHTE Trigger: CTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAG...TTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | GCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCGCTGGAGTCCAGGAGTaGTTGGTGAGCATCCATGTA | + |
|
Preference number: 5 (lower is better) Translates to: ATTDVPSACPENTGKINFAGVQE*LVSIHV Trigger: TACATGGATGCTCACCAACAACTCCTGGACTCCAGC...GAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177846.8 |
||
| CDS-3UTR CAA 90 bp | TGCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCTGAGCGAACTGTGCTaGCATAACCTGGAGCTGATC | + |
|
Preference number: 5 (lower is better) Translates to: CYNGRAFSLSRKHWQNKFLSELC*HNLELI Trigger: GATCAGCTCCAGGTTATGCAAGCACAGTTCGCTCAG...AAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | GCATGCTACAACGGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAAGCTGAGGAAGAATGGTaGGGACTGACGTGTTTCTTA | + |
|
Preference number: 5 (lower is better) Translates to: ACYNGRAFSLSRKHWQNKAEEEW*GLTCFL Trigger: TAAGAAACACGTCAGTCCCAACCATTCTTCCTCAGC...TTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCCGTTGTAGCATGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | GACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAAGCTGGAGTCCAGGAGTaGTTGGTGAGCTACCATCCA | + |
|
Preference number: 5 (lower is better) Translates to: DVPSACPENTGKINFSCKAGVQE*LVSYHP Trigger: TGGATGGTAGCTCACCAACAACTCCTGGACTCCAGC...TTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | GACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAAACCTTGAGGAGGTATTaGTCCACAATCTCCAGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: DVPSACPENTGKINFSCKTLRRY*STISRP Trigger: CGGCCTGGAGATTGTGGACAAATACCTCCTCAAGGT...TTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | CTTTTGGTGACAAATAAGTTAATAGACACACACTCGAGCCAACTATCTCCAGACACCTTGAGGAGGTATTaGTCCACAATCTCCAGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: LLVTNKLIDTHSSQLSPDTLRRY*STISRP Trigger: CGGCCTGGAGATTGTGGACAAATACCTCCTCAAGGT...GTCTGGAGATAGTTGGCTCGAGTGTGTGTCTATTAACTTATTTGTCACCAAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | GTGACAAATAAGTTAATAGACACACACTCGAGCCAACTATCTCCAGACAATACATTGGCAGCTGGGTCATaGGATGGGGTAACAAGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: VTNKLIDTHSSQLSPDNTLAAGS*DGVTRA Trigger: AGCCCTTGTTACCCCATCCAATGACCCAGCTGCCAA...TGTATTGTCTGGAGATAGTTGGCTCGAGTGTGTGTCTATTAACTTATTTGTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | GGACGTGCCTTCAGCTTGTCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAACTTCTCTCTTCAGATaGTCCAGCATGCAGTCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: GRAFSLSRKHWQNKFQLQTSLFR*SSMQSK Trigger: CTTTGACTGCATGCTGGACAATCTGAAGAGAGAAGT...TTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGACAAGCTGAAGGCACGTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | CTTTTGGTGACAAATAAGTTAATAGACACACACTCGAGCCAACTATCTCCAGACACTTCTCTCTTCAGATaGTCCAGCATGCAGTCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: LLVTNKLIDTHSSQLSPDTSLFR*SSMQSK Trigger: CTTTGACTGCATGCTGGACAATCTGAAGAGAGAAGT...GTCTGGAGATAGTTGGCTCGAGTGTGTGTCTATTAACTTATTTGTCACCAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS-3UTR CAA 90 bp | TCCCGAAAACACTGGCAAAATAAATTTCAGTTGCAAATTCACAGATACAAGCTTCTGAGCGAACTGTGCTaGCATAACCTGGAGCTGATC | + |
|
Preference number: 5 (lower is better) Translates to: SRKHWQNKFQLQIHRYKLLSELC*HNLELI Trigger: GATCAGCTCCAGGTTATGCAAGCACAGTTCGCTCAG...AAGCTTGTATCTGTGAATTTGCAACTGAAATTTATTTTGCCAGTGTTTTCGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000177846.8 ENSMUST00000205251.3 |
||
| CDS GCA 72 bp | CCCAGCGCCTTTGCGGGTCCTCCCGGCCGCCAGGGCTaGAGGCCGCCCGCACTCCTCCGACATGAGCCCGGG | + |
|
Preference number: 6 (lower is better) Translates to: PSAFAGPPGRQG*RPPALLRHEPG Trigger: CCCGGGCTCATGTCGGAGGAGTGCGGGCGGCCTGCAGCCCTGGCGGCCGGGAGGACCCGCAAAGGCGCTGGG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177846.8 |
||
| CDS CCA 72 bp | TTGCCTGGCGGGCACACGGAGCCCGAGGCCATGGACTaGGGCGAGGACGACGGGGAAAGCGGGGCCGAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: LPGGHTEPEAMD*GEDDGESGAEE Trigger: CTCCTCGGCCCCGCTTTCCCCGTCGTCCTCGCCCCAGTCCATGGCCTCGGGCTCCGTGTGCCCGCCAGGCAA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000177846.8 ENSMUST00000204171.3 ENSMUST00000204403.2 ENSMUST00000205251.3 |
||
| CDS CAA 90 bp | TCCCCGGCTCCCTCGGGATTCACCAGTCCTTCTTCCCCAGCGCCTTaGCGGGTCCTCCCGGCCGCCAGGGCTGCAGGCCGCCCGCACTCC | + |
|
Preference number: 6 (lower is better) Translates to: SPAPSGFTSPSSPAP*RVLPAARAAGRPHS Trigger: GGAGTGCGGGCGGCCTGCAGCCCTGGCGGCCGGGAGGACCCGCAAAGGCGCTGGGGAAGAAGGACTGGTGAATCCCGAGGGAGCCGGGGA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000177846.8 ENSMUST00000204403.2 ENSMUST00000205251.3 |
||
| CDS CAA 72 bp | CCCTCGGGATTCACCAGTCCTTCTTCCCCAGCGCCTTaGCGGGTCCTCCCGGCCGCCAGGGCTGCAGGCCGC | + |
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Preference number: 6 (lower is better) Translates to: PSGFTSPSSPAP*RVLPAARAAGR Trigger: GCGGCCTGCAGCCCTGGCGGCCGGGAGGACCCGCAAAGGCGCTGGGGAAGAAGGACTGGTGAATCCCGAGGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000177846.8 ENSMUST00000204403.2 ENSMUST00000205251.3 |
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| CDS CCA 72 bp | AATCTCCAGGCCGCAGCTGCTGCACACACACTTGCCTaGCGGGCACACGGAGCCCGAGGCCATGGACTGGGG | + |
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Preference number: 6 (lower is better) Translates to: NLQAAAAAHTLA*RAHGARGHGLG Trigger: CCCCAGTCCATGGCCTCGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000177846.8 ENSMUST00000204171.3 ENSMUST00000204403.2 ENSMUST00000205251.3 |
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| CDS GCA 72 bp | CCACAATCTCCAGGCCGCAGCTGCTGCACACACACTTaGCTGGCGGGCACACGGAGCCCGAGGCCATGGACT | + |
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Preference number: 6 (lower is better) Translates to: PQSPGRSCCTHT*LAGTRSPRPWT Trigger: AGTCCATGGCCTCGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATTGTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000177846.8 ENSMUST00000204171.3 ENSMUST00000204403.2 ENSMUST00000205251.3 |
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| CDS CAA 72 bp | TCCACAATCTCCAGGCCGCAGCTGCTGCACACACACTaGCCTGGCGGGCACACGGAGCCCGAGGCCATGGAC | + |
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Preference number: 6 (lower is better) Translates to: STISRPQLLHTH*PGGHTEPEAMD Trigger: GTCCATGGCCTCGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATTGTGGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000177846.8 ENSMUST00000204171.3 ENSMUST00000204403.2 ENSMUST00000205251.3 |
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| CDS CAA 90 bp | AGGTATTTGTCCACAATCTCCAGGCCGCAGCTGCTGCACACACACTaGCCTGGCGGGCACACGGAGCCCGAGGCCATGGACTGGGGCGAG | + |
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Preference number: 6 (lower is better) Translates to: RYLSTISRPQLLHTH*PGGHTEPEAMDWGE Trigger: CTCGCCCCAGTCCATGGCCTCGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATTGTGGACAAATACCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000177846.8 ENSMUST00000204171.3 ENSMUST00000204403.2 ENSMUST00000205251.3 |
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| CDS GCA 72 bp | GGAGGTATTTGTCCACAATCTCCAGGCCGCAGCTGCTaGACACACACTTGCCTGGCGGGCACACGGAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: GGICPQSPGRSC*THTCLAGTRSP Trigger: CGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATTGTGGACAAATACCTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000177846.8 ENSMUST00000204171.3 ENSMUST00000204403.2 ENSMUST00000205251.3 |
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| CDS GCA 72 bp | CCAGGAGTTGTTGGTGAGCTACCATCCATGTATGAGTaGAGCGCAGTCAGCATCGTCCCATCCTGGGGTACG | + |
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Preference number: 6 (lower is better) Translates to: PGVVGELPSMYE*SAVSIVPSWGT Trigger: CGTACCCCAGGATGGGACGATGCTGACTGCGCTGCACTCATACATGGATGGTAGCTCACCAACAACTCCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205251.3 |
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| CDS CAA 90 bp | GCTGGGTCATTGGATGGGGTAACAAGGGCTGGAGTCCAGGAGTTGTaGGTGAGCTACCATCCATGTATGAGTGCAGCGCAGTCAGCATCG | + |
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Preference number: 6 (lower is better) Translates to: AGSLDGVTRAGVQEL*VSYHPCMSAAQSAS Trigger: CGATGCTGACTGCGCTGCACTCATACATGGATGGTAGCTCACCAACAACTCCTGGACTCCAGCCCTTGTTACCCCATCCAATGACCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205251.3 |
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| CDS CCA 72 bp | ATTGGCAGCTGGGTCATTGGATGGGGTAACAAGGGCTaGAGTCCAGGAGTTGTTGGTGAGCTACCATCCATG | + |
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Preference number: 6 (lower is better) Translates to: IGSWVIGWGNKG*SPGVVGELPSM Trigger: CATGGATGGTAGCTCACCAACAACTCCTGGACTCCAGCCCTTGTTACCCCATCCAATGACCCAGCTGCCAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205251.3 |
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| CDS CAA 72 bp | TTGGATGGGGTAACAAGGGCTGGAGTCCAGGAGTTGTaGGTGAGCTACCATCCATGTATGAGTGCAGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: LDGVTRAGVQEL*VSYHPCMSAAQ Trigger: CTGCGCTGCACTCATACATGGATGGTAGCTCACCAACAACTCCTGGACTCCAGCCCTTGTTACCCCATCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205251.3 |
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| CDS GCA 72 bp | GACGTTCTGCAGACACTGCAGGAGAGACAGCGGACATaGCAGCATAAGTCATTCACCTTGAGGAGGTATTTG | + |
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Preference number: 6 (lower is better) Translates to: DVLQTLQERQRT*QHKSFTLRRYL Trigger: CAAATACCTCCTCAAGGTGAATGACTTATGCTGGCATGTCCGCTGTCTCTCCTGCAGTGTCTGCAGAACGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000177846.8 ENSMUST00000204403.2 ENSMUST00000205251.3 |
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