Pregenerated sensors for LHX5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029595Ensembl transcript IDs: ENSMUST00000031591.10
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGTTCGTCCTGATGGCCCAGCCTCCAGGTCCCGGGCAGGGAGAGTaGTCCGTGGGCAAATGCTCAATGACTTGGCGCCCGGCTCAGGGT | + |
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Preference number: 1 (lower is better) Translates to: LFVLMAQPPGPGQGE*SVGKCSMTWRPAQG Trigger: ACCCTGAGCCGGGCGCCAAGTCATTGAGCATTTGCCCACGGATCACTCTCCCTGCCCGGGACCTGGAGGCTGGGCCATCAGGACGAACAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR GCA 90 bp | CGTGCCAAAGCTCTGAGGGGTGGTGATGCGAGTGGCCTGGTTGGGTaGGAACCCACGAGAGGACTCTTGAGGCTTACCCAGGCGGCGTCC | + |
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Preference number: 1 (lower is better) Translates to: RAKALRGGDASGLVG*EPTRGLLRLTQAAS Trigger: GGACGCCGCCTGGGTAAGCCTCAAGAGTCCTCTCGTGGGTTCGCACCCAACCAGGCCACTCGCATCACCACCCCTCAGAGCTTTGGCACG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR CCA 90 bp | ATCCTGCCAGGCCCCTCAGACTCAAAGTATGGAGGAGCAGGGAGTTaGGCTCAGGAAGGCCAGGCCCAGACCGCGCACCTTCCTAGACAA | + |
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Preference number: 1 (lower is better) Translates to: ILPGPSDSKYGGAGS*AQEGQAQTAHLPRQ Trigger: TTGTCTAGGAAGGTGCGCGGTCTGGGCCTGGCCTTCCTGAGCCCAACTCCCTGCTCCTCCATACTTTGAGTCTGAGGGGCCTGGCAGGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR TCA 90 bp | ATTGACTTTGGTCCCGAGAAATTGCGCAGGCGCGTGCCAAAGCTCTaGGGGGTGGTGATGCGAGTGGCCTGGTTGGGTGCGAACCCACGA | + |
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Preference number: 1 (lower is better) Translates to: IDFGPEKLRRRVPKL*GVVMRVAWLGANPR Trigger: TCGTGGGTTCGCACCCAACCAGGCCACTCGCATCACCACCCCTCAGAGCTTTGGCACGCGCCTGCGCAATTTCTCGGGACCAAAGTCAAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR CCA 90 bp | CTGCAAAGCCACCATTCACCGGCGGTCCTCCTCATTTTTCTTCTCTaGCTGAGCTTTCCTCAGCTCGCTCGCGCTCTCTCTCTCTCTCTC | + |
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Preference number: 1 (lower is better) Translates to: LQSHHSPAVLLIFLL*LSFPQLARALSLSL Trigger: GAGAGAGAGAGAGAGAGCGCGAGCGAGCTGAGGAAAGCTCAGCCAGAGAAGAAAAATGAGGAGGACCGCCGGTGAATGGTGGCTTTGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR GCA 90 bp | CAAGGAGGTGATGATGGGTGGGGGATCCGGAGGGCTTCTAAGATGTaGTTGGAATCTCGACCCTTCAGAATATTGACTTTGGTCCCGAGA | + |
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Preference number: 1 (lower is better) Translates to: QGGDDGWGIRRASKM*LESRPFRILTLVPR Trigger: TCTCGGGACCAAAGTCAATATTCTGAAGGGTCGAGATTCCAAGCACATCTTAGAAGCCCTCCGGATCCCCCACCCATCATCACCTCCTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR-3UTR CCA 90 bp | GACAAGCTGACATTGAGCCACCAGGGGGCGCCAACTCGCAGGTGGATTTGTCTTCCGTCCCGGGCTTGGTaGCAGGGGGACAACTCAGCC | + |
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Preference number: 2 (lower is better) Translates to: DKLTLSHQGAPTRRWICLPSRAW*QGDNSA Trigger: GGCTGAGTTGTCCCCCTGCCACCAAGCCCGGGACGG...AAGACAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAATGTCAGCTTGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR-3UTR CCA 90 bp | CTCTTAGTTCAAGGAGGTGATGATGGGTGGGGGATCCGGAGGGCTTCTAAGATGGTCCCGTCCCGGGCTTaGTGGCAGGGGGACAACTCA | + |
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Preference number: 2 (lower is better) Translates to: LLVQGGDDGWGIRRASKMVPSRA*WQGDNS Trigger: TGAGTTGTCCCCCTGCCACCAAGCCCGGGACGGGAC...CATCTTAGAAGCCCTCCGGATCCCCCACCCATCATCACCTCCTTGAACTAAGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR-3UTR CCA 90 bp | CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCCCCCTTTCAACCTGGAGGTGATGATGGGTaGGGGATCCGGAGGGCTTCT | + |
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Preference number: 2 (lower is better) Translates to: LSLSLSLSLSLFLSPFQPGGDDG*GIRRAS Trigger: AGAAGCCCTCCGGATCCCCCACCCATCATCACCTCC...AGGTTGAAAGGGGGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR CAA 90 bp | CGGAGGGCTTCTAAGATGTGCTTGGAATCTCGACCCTTCAGAATATaGACTTTGGTCCCGAGAAATTGCGCAGGCGCGTGCCAAAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: RRASKMCLESRPFRI*TLVPRNCAGACQSS Trigger: AGAGCTTTGGCACGCGCCTGCGCAATTTCTCGGGACCAAAGTCAATATTCTGAAGGGTCGAGATTCCAAGCACATCTTAGAAGCCCTCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR CAA 90 bp | GGAGGTGATGATGGGTGGGGGATCCGGAGGGCTTCTAAGATGTGCTaGGAATCTCGACCCTTCAGAATATTGACTTTGGTCCCGAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: GGDDGWGIRRASKMC*ESRPFRILTLVPRN Trigger: ATTTCTCGGGACCAAAGTCAATATTCTGAAGGGTCGAGATTCCAAGCACATCTTAGAAGCCCTCCGGATCCCCCACCCATCATCACCTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR-3UTR TCA 90 bp | CTCATTTTTCTTCTCTGGCTGAGCTTTCCTCAGCTCGCTCGCGCTCTCTCTCTCGACCCTTCAGAATATTaGCTTTGGTCCCGAGAAATT | + |
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Preference number: 2 (lower is better) Translates to: LIFLLWLSFPQLARALSLDPSEY*LWSREI Trigger: AATTTCTCGGGACCAAAGTCAATATTCTGAAGGGTC...GAGAGAGAGAGCGCGAGCGAGCTGAGGAAAGCTCAGCCAGAGAAGAAAAATGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR-3UTR GCA 90 bp | CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCCCCCTTTCAACCTAGGGCTTCTAAGATGTaGTTGGAATCTCGACCCTTC | + |
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Preference number: 2 (lower is better) Translates to: LSLSLSLSLSLFLSPFQPRASKM*LESRPF Trigger: GAAGGGTCGAGATTCCAAGCACATCTTAGAAGCCCT...AGGTTGAAAGGGGGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR-3UTR CAA 90 bp | GGCGCCCGGCTCAGGGTCAGAGCAGGGTGGGAGGGTTCGAATCCTGCCAGGCCCAACTCGCAGGTGGATTaGTCTTCCTGCAAAGCCACC | + |
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Preference number: 3 (lower is better) Translates to: GARLRVRAGWEGSNPARPNSQVD*SSCKAT Trigger: GGTGGCTTTGCAGGAAGACAAATCCACCTGCGAGTT...GGGCCTGGCAGGATTCGAACCCTCCCACCCTGCTCTGACCCTGAGCCGGGCGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR CCA 72 bp | GGCCCCTCAGACTCAAAGTATGGAGGAGCAGGGAGTTaGGCTCAGGAAGGCCAGGCCCAGACCGCGCACCTT | + |
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Preference number: 3 (lower is better) Translates to: GPSDSKYGGAGS*AQEGQAQTAHL Trigger: AAGGTGCGCGGTCTGGGCCTGGCCTTCCTGAGCCCAACTCCCTGCTCCTCCATACTTTGAGTCTGAGGGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR GCA 72 bp | GCTCTGAGGGGTGGTGATGCGAGTGGCCTGGTTGGGTaGGAACCCACGAGAGGACTCTTGAGGCTTACCCAG | + |
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Preference number: 3 (lower is better) Translates to: ALRGGDASGLVG*EPTRGLLRLTQ Trigger: CTGGGTAAGCCTCAAGAGTCCTCTCGTGGGTTCGCACCCAACCAGGCCACTCGCATCACCACCCCTCAGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR GCA 72 bp | GCTCAGGGTCAGAGCAGGGTGGGAGGGTTCGAATCCTaGCAGGCCCCTCAGACTCAAAGTATGGAGGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: AQGQSRVGGFES*QAPQTQSMEEQ Trigger: CTGCTCCTCCATACTTTGAGTCTGAGGGGCCTGGCAGGATTCGAACCCTCCCACCCTGCTCTGACCCTGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR GCA 72 bp | CCAGGGGGCGCCAACTCGCAGGTGGATTTGTCTTCCTaGAAAGCCACCATTCACCGGCGGTCCTCCTCATTT | + |
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Preference number: 3 (lower is better) Translates to: PGGANSQVDLSS*KATIHRRSSSF Trigger: AAATGAGGAGGACCGCCGGTGAATGGTGGCTTTGCAGGAAGACAAATCCACCTGCGAGTTGGCGCCCCCTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR CCA 72 bp | CTCGCAGGGAGGGGTAGTGCCATGGTCTCCGCTCCTTaGCCTCATCCCCCTCTCTTAGTTCAAGGAGGTGAT | + |
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Preference number: 3 (lower is better) Translates to: LAGRGSAMVSAP*PHPPLLVQGGD Trigger: ATCACCTCCTTGAACTAAGAGAGGGGGATGAGGCCAAGGAGCGGAGACCATGGCACTACCCCTCCCTGCGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR CCA 72 bp | CTGACATTGAGCCACCAGGGGGCGCCAACTCGCAGGTaGATTTGTCTTCCTGCAAAGCCACCATTCACCGGC | + |
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Preference number: 3 (lower is better) Translates to: LTLSHQGAPTRR*ICLPAKPPFTG Trigger: GCCGGTGAATGGTGGCTTTGCAGGAAGACAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAATGTCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR-3UTR CAA 90 bp | TCGCAGGGAGGGGTAGTGCCATGGTCTCCGCTCCTTGGCCTCATCCCCCTCTCTCGACCCTTCAGAATATaGACTTTGGTCCCGAGAAAT | + |
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Preference number: 3 (lower is better) Translates to: SQGGVVPWSPLLGLIPLSRPFRI*TLVPRN Trigger: ATTTCTCGGGACCAAAGTCAATATTCTGAAGGGTCG...AGAGAGGGGGATGAGGCCAAGGAGCGGAGACCATGGCACTACCCCTCCCTGCGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR TCA 72 bp | ATTCACCGGCGGTCCTCCTCATTTTTCTTCTCTGGCTaGGCTTTCCTCAGCTCGCTCGCGCTCTCTCTCTCT | + |
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Preference number: 3 (lower is better) Translates to: IHRRSSSFFFSG*AFLSSLALSLS Trigger: AGAGAGAGAGAGCGCGAGCGAGCTGAGGAAAGCTCAGCCAGAGAAGAAAAATGAGGAGGACCGCCGGTGAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR CCA 72 bp | CATCCCCCTCTCTTAGTTCAAGGAGGTGATGATGGGTaGGGGATCCGGAGGGCTTCTAAGATGTGCTTGGAA | + |
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Preference number: 3 (lower is better) Translates to: HPPLLVQGGDDG*GIRRASKMCLE Trigger: TTCCAAGCACATCTTAGAAGCCCTCCGGATCCCCCACCCATCATCACCTCCTTGAACTAAGAGAGGGGGATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR TCA 72 bp | CTAAGATGTGCTTGGAATCTCGACCCTTCAGAATATTaGCTTTGGTCCCGAGAAATTGCGCAGGCGCGTGCC | + |
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Preference number: 3 (lower is better) Translates to: LRCAWNLDPSEY*LWSREIAQARA Trigger: GGCACGCGCCTGCGCAATTTCTCGGGACCAAAGTCAATATTCTGAAGGGTCGAGATTCCAAGCACATCTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR GCA 72 bp | GATGATGGGTGGGGGATCCGGAGGGCTTCTAAGATGTaGTTGGAATCTCGACCCTTCAGAATATTGACTTTG | + |
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Preference number: 3 (lower is better) Translates to: DDGWGIRRASKM*LESRPFRILTL Trigger: CAAAGTCAATATTCTGAAGGGTCGAGATTCCAAGCACATCTTAGAAGCCCTCCGGATCCCCCACCCATCATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR TCA 90 bp | CCGGCTCAGGGTCAGAGCAGGGTGGGAGGGTTCGAATCCTGCCAGGCCCCTCAGGGCTGGGCCCGCCGCTaGACACCTCTCCCGGCATGG | + |
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Preference number: 4 (lower is better) Translates to: PAQGQSRVGGFESCQAPQGWARR*TPLPAW Trigger: CCATGCCGGGAGAGGTGTTCAGCGGCGGGCCCAGCC...CTGAGGGGCCTGGCAGGATTCGAACCCTCCCACCCTGCTCTGACCCTGAGCCGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR GCA 90 bp | CCGGCTCAGGGTCAGAGCAGGGTGGGAGGGTTCGAATCCTGCCAGGCCCCTCAGCACTGTAGCCGCTGGTaGCGCTCATGGGGAAGGGCG | + |
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Preference number: 4 (lower is better) Translates to: PAQGQSRVGGFESCQAPQHCSRW*RSWGRA Trigger: CGCCCTTCCCCATGAGCGGCACCAGCGGCTACAGTG...CTGAGGGGCCTGGCAGGATTCGAACCCTCCCACCCTGCTCTGACCCTGAGCCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR GCA 90 bp | CCGGCTCAGGGTCAGAGCAGGGTGGGAGGGTTCGAATCCTGCCAGGCCCCTCAGCTCGGAGAGATACCTTaGGCGCAGCCGGCGCACTTT | + |
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Preference number: 4 (lower is better) Translates to: PAQGQSRVGGFESCQAPQLGEIP*AQPAHF Trigger: AAAGTGCGCCGGCTGCGCGCAAGGTATCTCTCCGAG...CTGAGGGGCCTGGCAGGATTCGAACCCTCCCACCCTGCTCTGACCCTGAGCCGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CCA 90 bp | ATGCTCAATGACTTGGCGCCCGGCTCAGGGTCAGAGCAGGGTGGGAGGGTTCGACGCGAATGTGGCGCGTaGGCTTGGGCGTGGCTGCGA | + |
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Preference number: 4 (lower is better) Translates to: MLNDLAPGSGSEQGGRVRRECGA*AWAWLR Trigger: TCGCAGCCACGCCCAAGCCCACGCGCCACATTCGCG...TCGAACCCTCCCACCCTGCTCTGACCCTGAGCCGGGCGCCAAGTCATTGAGCAT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CCA 90 bp | TCGCAGGGAGGGGTAGTGCCATGGTCTCCGCTCCTTGGCCTCATCCCCCTCTCTATGCTGCCAGGAAGCTaGAGTCGGCAGGGGACTGCG | + |
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Preference number: 4 (lower is better) Translates to: SQGGVVPWSPLLGLIPLSMLPGS*SRQGTA Trigger: CGCAGTCCCCTGCCGACTCCAGCTTCCTGGCAGCAT...AGAGAGGGGGATGAGGCCAAGGAGCGGAGACCATGGCACTACCCCTCCCTGCGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR TCA 90 bp | TCGCAGGGAGGGGTAGTGCCATGGTCTCCGCTCCTTGGCCTCATCCCCCTCTCTGCGAGATCATGTCGGTaGATCTGGGGTTGTCCGCGC | + |
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Preference number: 4 (lower is better) Translates to: SQGGVVPWSPLLGLIPLSARSCR*IWGCPR Trigger: GCGCGGACAACCCCAGATTCACCGACATGATCTCGC...AGAGAGGGGGATGAGGCCAAGGAGCGGAGACCATGGCACTACCCCTCCCTGCGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR TCA 90 bp | CCGGCTCAGGGTCAGAGCAGGGTGGGAGGGTTCGAATCCTGCCAGGCCCCTCAGGGTTTCCTTGTCCGATaGGGTCGAATTGTCGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: PAQGQSRVGGFESCQAPQGFLVR*GRIVGL Trigger: GAGACCGACAATTCGACCTCATCGGACAAGGAAACC...CTGAGGGGCCTGGCAGGATTCGAACCCTCCCACCCTGCTCTGACCCTGAGCCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR GCA 90 bp | CAGGCGGCGTCCCGTCCCGGGCTTGGTGGCAGGGGGACAACTCAGCCCCTCGGCTTTTACAGTATAGCTTaGCTTCCCGTGAGAAGCACT | + |
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Preference number: 4 (lower is better) Translates to: QAASRPGLGGRGTTQPLGFYSIA*LPVRST Trigger: AGTGCTTCTCACGGGAAGGCAAGCTATACTGTAAAA...GCCGAGGGGCTGAGTTGTCCCCCTGCCACCAAGCCCGGGACGGGACGCCGCCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR GCA 90 bp | CATTTTTCTTCTCTGGCTGAGCTTTCCTCAGCTCGCTCGCGCTCTCTCTCTCTCTCTCCCGGCATGGGGTaGAGCGCACCGGGCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: HFSSLAELSSARSRSLSLSPGMG*SAPGRP Trigger: GGGCCTGCCCGGTGCGCTGCACCCCATGCCGGGAGA...GAGAGAGAGAGAGCGCGAGCGAGCTGAGGAAAGCTCAGCCAGAGAAGAAAAATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CCA 90 bp | GACAAGCTGACATTGAGCCACCAGGGGGCGCCAACTCGCAGGTGGATTTGTCTTTGTGGCGCGTGGGCTTaGGCGTGGCTGCGAAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: DKLTLSHQGAPTRRWICLCGAWA*AWLRRL Trigger: CAGCCTTCGCAGCCACGCCCAAGCCCACGCGCCACA...AAGACAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAATGTCAGCTTGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CCA 90 bp | CTCATTTTTCTTCTCTGGCTGAGCTTTCCTCAGCTCGCTCGCGCTCTCTCTCTCCGCTGGTGCCGCTCATaGGGAAGGGCGGGCTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: LIFLLWLSFPQLARALSLRWCRS*GRAGWA Trigger: GGCCCAGCCCGCCCTTCCCCATGAGCGGCACCAGCG...GAGAGAGAGAGCGCGAGCGAGCTGAGGAAAGCTCAGCCAGAGAAGAAAAATGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR TCA 90 bp | CTCTTAGTTCAAGGAGGTGATGATGGGTGGGGGATCCGGAGGGCTTCTAAGATGAGGGGACTGCGCCTGTaGCGGCGGACCGTGCGCGAA | + |
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Preference number: 4 (lower is better) Translates to: LLVQGGDDGWGIRRASKMRGLRL*RRTVRE Trigger: TTCGCGCACGGTCCGCCGTCACAGGCGCAGTCCCCT...CATCTTAGAAGCCCTCCGGATCCCCCACCCATCATCACCTCCTTGAACTAAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR GCA 90 bp | CTTCCTGCAAAGCCACCATTCACCGGCGGTCCTCCTCATTTTTCTTCTCTGGCTCGCCCAGGGGACGCATaGGCCGCGGACTCCGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: LPAKPPFTGGPPHFSSLARPGDA*AADSGR Trigger: TCTTCCGGAGTCCGCGGCGCATGCGTCCCCTGGGCG...AGCCAGAGAAGAAAAATGAGGAGGACCGCCGGTGAATGGTGGCTTTGCAGGAAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CCA 90 bp | GACAAGCTGACATTGAGCCACCAGGGGGCGCCAACTCGCAGGTGGATTTGTCTTGCGGGCCGCGCCGTTTaGTGCCGGAGTTCTGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: DKLTLSHQGAPTRRWICLAGRAV*CRSSVP Trigger: AGGAACAGAACTCCGGCACCAAACGGCGCGGCCCGC...AAGACAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAATGTCAGCTTGTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR CAA 72 bp | ATTGAGCCACCAGGGGGCGCCAACTCGCAGGTGGATTaGTCTTCCTGCAAAGCCACCATTCACCGGCGGTCC | + |
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Preference number: 4 (lower is better) Translates to: IEPPGGANSQVD*SSCKATIHRRS Trigger: GGACCGCCGGTGAATGGTGGCTTTGCAGGAAGACAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR GCA 90 bp | AGGGTGGGAGGGTTCGAATCCTGCCAGGCCCCTCAGACTCAAAGTATGGAGGAGGGTCCGGGGACAAACTaGGGTCCGTACAGGACGACA | + |
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Preference number: 4 (lower is better) Translates to: RVGGFESCQAPQTQSMEEGPGTN*GPYRTT Trigger: TGTCGTCCTGTACGGACCGCAGTTTGTCCCCGGACC...CTCCTCCATACTTTGAGTCTGAGGGGCCTGGCAGGATTCGAACCCTCCCACCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR GCA 90 bp | CTGACATTGAGCCACCAGGGGGCGCCAACTCGCAGGTGGATTTGTCTTCCTGCAGAGGCCCGTCTCCTGTaGCAGCTGTTCGCGAATGTG | + |
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Preference number: 4 (lower is better) Translates to: LTLSHQGAPTRRWICLPAEARLL*QLFANV Trigger: CACATTCGCGAACAGCTGGCACAGGAGACGGGCCTC...TGCAGGAAGACAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAATGTCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CCA 90 bp | TTGAGGCTTACCCAGGCGGCGTCCCGTCCCGGGCTTGGTGGCAGGGGGACAACTACTTCTCCGAGAGGTTaGTTTTGCACTCGCAGCATT | + |
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Preference number: 4 (lower is better) Translates to: LRLTQAASRPGLGGRGTTTSPRG*FCTRSI Trigger: AATGCTGCGAGTGCAAAACCAACCTCTCGGAGAAGT...AGTTGTCCCCCTGCCACCAAGCCCGGGACGGGACGCCGCCTGGGTAAGCCTCAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CCA 90 bp | TTGAGGCTTACCCAGGCGGCGTCCCGTCCCGGGCTTGGTGGCAGGGGGACAACTAATTGTCGGTCTCTTTaGGGTCGTCCTGTAACGGAT | + |
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Preference number: 4 (lower is better) Translates to: LRLTQAASRPGLGGRGTTNCRSL*GRPVTD Trigger: ATCCGTTACAGGACGACCCCAAAGAGACCGACAATT...AGTTGTCCCCCTGCCACCAAGCCCGGGACGGGACGCCGCCTGGGTAAGCCTCAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CCA 90 bp | TCACCGGCGGTCCTCCTCATTTTTCTTCTCTGGCTGAGCTTTCCTCAGCTCGCTGTCCACTGTAGCCGCTaGTGCCGCTCATGGGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: SPAVLLIFLLWLSFPQLAVHCSR*CRSWGR Trigger: CCTTCCCCATGAGCGGCACCAGCGGCTACAGTGGAC...AGCGAGCTGAGGAAAGCTCAGCCAGAGAAGAAAAATGAGGAGGACCGCCGGTGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR GCA 90 bp | ATCCTGCCAGGCCCCTCAGACTCAAAGTATGGAGGAGCAGGGAGTTGGGCTCAGCTCGGCGTGTCCGGATaGGAGATCATGTCGGTGAAT | + |
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Preference number: 4 (lower is better) Translates to: ILPGPSDSKYGGAGSWAQLGVSG*EIMSVN Trigger: ATTCACCGACATGATCTCGCATCCGGACACGCCGAG...CTGAGCCCAACTCCCTGCTCCTCCATACTTTGAGTCTGAGGGGCCTGGCAGGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CCA 90 bp | CCTAGACAAGCTGACATTGAGCCACCAGGGGGCGCCAACTCGCAGGTGGATTTGAGAGCTCCTCTCCGGTaGATAGCTGCTTATTGCACA | + |
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Preference number: 4 (lower is better) Translates to: PRQADIEPPGGANSQVDLRAPLR*IAAYCT Trigger: TGTGCAATAAGCAGCTATCCACCGGAGAGGAGCTCT...CAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAATGTCAGCTTGTCTAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR TCA 90 bp | ATCCTGCCAGGCCCCTCAGACTCAAAGTATGGAGGAGCAGGGAGTTGGGCTCAGAGCATTGAACACATTTaGTATGCCACGCGCGGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: ILPGPSDSKYGGAGSWAQSIEHI*YATRGL Trigger: TAGACCGCGCGTGGCATATCAAATGTGTTCAATGCT...CTGAGCCCAACTCCCTGCTCCTCCATACTTTGAGTCTGAGGGGCCTGGCAGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CCA 90 bp | CTCTTAGTTCAAGGAGGTGATGATGGGTGGGGGATCCGGAGGGCTTCTAAGATGTCCTGTAACGGATCCTaGAGGTCCGGGGACAAACTG | + |
|
Preference number: 4 (lower is better) Translates to: LLVQGGDDGWGIRRASKMSCNGS*RSGDKL Trigger: CAGTTTGTCCCCGGACCTCCAGGATCCGTTACAGGA...CATCTTAGAAGCCCTCCGGATCCCCCACCCATCATCACCTCCTTGAACTAAGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CCA 90 bp | CTAGACAAGCTGACATTGAGCCACCAGGGGGCGCCAACTCGCAGGTGGATTTGTTCATGCGGCGTTCTTTaGACCTTCGGTTCTGAAACC | + |
|
Preference number: 4 (lower is better) Translates to: LDKLTLSHQGAPTRRWICSCGVL*TFGSET Trigger: GGTTTCAGAACCGAAGGTCCAAAGAACGCCGCATGA...ACAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAATGTCAGCTTGTCTAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR GCA 90 bp | TCACCGGCGGTCCTCCTCATTTTTCTTCTCTGGCTGAGCTTTCCTCAGCTCGCTCCGAGAGGTTGGTTTTaGACTCGCAGCATTGAACAC | + |
|
Preference number: 4 (lower is better) Translates to: SPAVLLIFLLWLSFPQLAPRGWF*TRSIEH Trigger: GTGTTCAATGCTGCGAGTGCAAAACCAACCTCTCGG...AGCGAGCTGAGGAAAGCTCAGCCAGAGAAGAAAAATGAGGAGGACCGCCGGTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR GCA 90 bp | AGGGTGGGAGGGTTCGAATCCTGCCAGGCCCCTCAGACTCAAAGTATGGAGGAGTTAAGTAGTCGTCCTTaGACACAAACTTGTTCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: RVGGFESCQAPQTQSMEELSSRP*TQTCSR Trigger: ACGAGAACAAGTTTGTGTGCAAGGACGACTACTTAA...CTCCTCCATACTTTGAGTCTGAGGGGCCTGGCAGGATTCGAACCCTCCCACCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR GCA 90 bp | CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCCCCCTTTCAACCTCGCTCAGCTGTTTCATaGGGCGTTCTTTGGACCTTC | + |
|
Preference number: 4 (lower is better) Translates to: LSLSLSLSLSLFLSPFQPRSAVS*GVLWTF Trigger: GAAGGTCCAAAGAACGCCGCATGAAACAGCTGAGCG...AGGTTGAAAGGGGGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR CAA 72 bp | GATGGGTGGGGGATCCGGAGGGCTTCTAAGATGTGCTaGGAATCTCGACCCTTCAGAATATTGACTTTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: DGWGIRRASKMC*ESRPFRILTLV Trigger: GACCAAAGTCAATATTCTGAAGGGTCGAGATTCCAAGCACATCTTAGAAGCCCTCCGGATCCCCCACCCATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| 3UTR CAA 72 bp | TCTAAGATGTGCTTGGAATCTCGACCCTTCAGAATATaGACTTTGGTCCCGAGAAATTGCGCAGGCGCGTGC | + |
|
Preference number: 4 (lower is better) Translates to: SKMCLESRPFRI*TLVPRNCAGAC Trigger: GCACGCGCCTGCGCAATTTCTCGGGACCAAAGTCAATATTCTGAAGGGTCGAGATTCCAAGCACATCTTAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR TCA 90 bp | CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCCCCCTTTCAACCTTTGCACTCGCAGCATTaGACACATTTGATATGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: LSLSLSLSLSLFLSPFQPLHSQH*THLICH Trigger: GTGGCATATCAAATGTGTTCAATGCTGCGAGTGCAA...AGGTTGAAAGGGGGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS CCA 90 bp | GCGCGCCCAGCGGCGTCGAGCCAGGTCCCGATGCTGCCAGGAAGCTaGAGTCGGCAGGGGACTGCGCCTGTGACGGCGGACCGTGCGCGA | + |
|
Preference number: 5 (lower is better) Translates to: ARPAASSQVPMLPGS*SRQGTAPVTADRAR Trigger: TCGCGCACGGTCCGCCGTCACAGGCGCAGTCCCCTGCCGACTCCAGCTTCCTGGCAGCATCGGGACCTGGCTCGACGCCGCTGGGCGCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS TCA 90 bp | GGCCCGGCTCGGGGCTCGGCGTGTCCGGATGCGAGATCATGTCGGTaGATCTGGGGTTGTCCGCGCCGTGAGGCCCGGCCAGCGGCGGTT | + |
|
Preference number: 5 (lower is better) Translates to: GPARGSACPDARSCR*IWGCPRREARPAAV Trigger: AACCGCCGCTGGCCGGGCCTCACGGCGCGGACAACCCCAGATTCACCGACATGATCTCGCATCCGGACACGCCGAGCCCCGAGCCGGGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS TCA 90 bp | TCCGGATGCGAGATCATGTCGGTGAATCTGGGGTTGTCCGCGCCGTaGGGCCCGGCCAGCGGCGGTTCCAGCGCGCCCAGCGGCGTCGAG | + |
|
Preference number: 5 (lower is better) Translates to: SGCEIMSVNLGLSAP*GPASGGSSAPSGVE Trigger: CTCGACGCCGCTGGGCGCGCTGGAACCGCCGCTGGCCGGGCCTCACGGCGCGGACAACCCCAGATTCACCGACATGATCTCGCATCCGGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CAA 90 bp | ATGCTCAATGACTTGGCGCCCGGCTCAGGGTCAGAGCAGGGTGGGAGGGTTCGACGCGGGCCGCGCCGTTaGGTGCCGGAGTTCTGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: MLNDLAPGSGSEQGGRVRRGPRR*VPEFCS Trigger: GGAACAGAACTCCGGCACCAAACGGCGCGGCCCGCG...TCGAACCCTCCCACCCTGCTCTGACCCTGAGCCGGGCGCCAAGTCATTGAGCAT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CAA 90 bp | TGCTCAATGACTTGGCGCCCGGCTCAGGGTCAGAGCAGGGTGGGAGGGTTCGAAATGTGGCGCGTGGGCTaGGGCGTGGCTGCGAAGGCT | + |
|
Preference number: 5 (lower is better) Translates to: CSMTWRPAQGQSRVGGFEMWRVG*GVAAKA Trigger: AGCCTTCGCAGCCACGCCCAAGCCCACGCGCCACAT...TTCGAACCCTCCCACCCTGCTCTGACCCTGAGCCGGGCGCCAAGTCATTGAGCA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CAA 90 bp | ATCCTGCCAGGCCCCTCAGACTCAAAGTATGGAGGAGCAGGGAGTTGGGCTCAGGCTCGGAGAGATACCTaGCGCGCAGCCGGCGCACTT | + |
|
Preference number: 5 (lower is better) Translates to: ILPGPSDSKYGGAGSWAQARRDT*RAAGAL Trigger: AAGTGCGCCGGCTGCGCGCAAGGTATCTCTCCGAGC...CTGAGCCCAACTCCCTGCTCCTCCATACTTTGAGTCTGAGGGGCCTGGCAGGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS CCA 90 bp | GAGGTCGAATTGTCGGTCTCTTTGGGGTCGTCCTGTAACGGATCCTaGAGGTCCGGGGACAAACTGCGGTCCGTACAGGACGACACCGAG | + |
|
Preference number: 5 (lower is better) Translates to: EVELSVSLGSSCNGS*RSGDKLRSVQDDTE Trigger: CTCGGTGTCGTCCTGTACGGACCGCAGTTTGTCCCCGGACCTCCAGGATCCGTTACAGGACGACCCCAAAGAGACCGACAATTCGACCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CAA 90 bp | GACAAGCTGACATTGAGCCACCAGGGGGCGCCAACTCGCAGGTGGATTTGTCTTTCGTTGAGCTCAGGGTaGGGGTGCGACAGGGGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: DKLTLSHQGAPTRRWICLSLSSG*GCDRGP Trigger: TGGACCCCTGTCGCACCCCAACCCTGAGCTCAACGA...AAGACAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAATGTCAGCTTGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS GCA 90 bp | GGGACTGCGCCTGTGACGGCGGACCGTGCGCGAAGAAATCGTAATTaGCTCCCGGAGCGTAGTAGTCACTTTGGTAGTCTCCGTAATAAG | + |
|
Preference number: 5 (lower is better) Translates to: GTAPVTADRARRNRN*LPERSSHFGSLRNK Trigger: CTTATTACGGAGACTACCAAAGTGACTACTACGCTCCGGGAGGCAATTACGATTTCTTCGCGCACGGTCCGCCGTCACAGGCGCAGTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CAA 90 bp | CTGACATTGAGCCACCAGGGGGCGCCAACTCGCAGGTGGATTTGTCTTCCTGCAGAATTGTCGGTCTCTTaGGGGTCGTCCTGTAACGGA | + |
|
Preference number: 5 (lower is better) Translates to: LTLSHQGAPTRRWICLPAELSVS*GSSCNG Trigger: TCCGTTACAGGACGACCCCAAAGAGACCGACAATTC...TGCAGGAAGACAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAATGTCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CAA 90 bp | AGACAAGCTGACATTGAGCCACCAGGGGGCGCCAACTCGCAGGTGGATTTGTCTTCCGATGAGGTCGAATaGTCGGTCTCTTTGGGGTCG | + |
|
Preference number: 5 (lower is better) Translates to: RQADIEPPGGANSQVDLSSDEVE*SVSLGS Trigger: CGACCCCAAAGAGACCGACAATTCGACCTCATCGGA...AGACAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAATGTCAGCTTGTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS TCA 90 bp | GAGAGATACCTTGCGCGCAGCCGGCGCACTTTGTGCCAAAGCGCCTaGAAAAGTCGTTTTTACAGTATAGCTTGCCTTCCCGTGAGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: ERYLARSRRTLCQSA*KSRFYSIACLPVRS Trigger: GCTTCTCACGGGAAGGCAAGCTATACTGTAAAAACGACTTTTTCAGGCGCTTTGGCACAAAGTGCGCCGGCTGCGCGCAAGGTATCTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CAA 90 bp | CTCATTTTTCTTCTCTGGCTGAGCTTTCCTCAGCTCGCTCGCGCTCTCTCTCTCCACTTCTCCGAGAGGTaGGTTTTGCACTCGCAGCAT | + |
|
Preference number: 5 (lower is better) Translates to: LIFLLWLSFPQLARALSLHFSER*VLHSQH Trigger: ATGCTGCGAGTGCAAAACCAACCTCTCGGAGAAGTG...GAGAGAGAGAGCGCGAGCGAGCTGAGGAAAGCTCAGCCAGAGAAGAAAAATGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CAA 90 bp | GACAAGCTGACATTGAGCCACCAGGGGGCGCCAACTCGCAGGTGGATTTGTCTTTTTGCACTCGCAGCATaGAACACATTTGATATGCCA | + |
|
Preference number: 5 (lower is better) Translates to: DKLTLSHQGAPTRRWICLFALAA*NTFDMP Trigger: TGGCATATCAAATGTGTTCAATGCTGCGAGTGCAAA...AAGACAAATCCACCTGCGAGTTGGCGCCCCCTGGTGGCTCAATGTCAGCTTGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CAA 90 bp | CATTTTTCTTCTCTGGCTGAGCTTTCCTCAGCTCGCTCGCGCTCTCTCTCTCTCGTGGATAGCTGCTTATaGCACACCATACAGGTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: HFSSLAELSSARSRSLSLVDSCL*HTIQVK Trigger: CTTCACCTGTATGGTGTGCAATAAGCAGCTATCCAC...GAGAGAGAGAGAGCGCGAGCGAGCTGAGGAAAGCTCAGCCAGAGAAGAAAAATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS-3UTR CAA 90 bp | CATTTTTCTTCTCTGGCTGAGCTTTCCTCAGCTCGCTCGCGCTCTCTCTCTCTCTTGAGACTTCCTTCCTaGAGGCTAGAGGAGCTTAAG | + |
|
Preference number: 5 (lower is better) Translates to: HFSSLAELSSARSRSLSLLRLPS*RLEELK Trigger: CTTAAGCTCCTCTAGCCTCAAGGAAGGAAGTCTCAA...GAGAGAGAGAGAGCGCGAGCGAGCTGAGGAAAGCTCAGCCAGAGAAGAAAAATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS TCA 72 bp | TGCCGCTCATGGGGAAGGGCGGGCTGGGCCCGCCGCTaGACACCTCTCCCGGCATGGGGTGCAGCGCACCGG | + |
|
Preference number: 6 (lower is better) Translates to: CRSWGRAGWARR*TPLPAWGAAHR Trigger: CCGGTGCGCTGCACCCCATGCCGGGAGAGGTGTTCAGCGGCGGGCCCAGCCCGCCCTTCCCCATGAGCGGCA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS GCA 72 bp | CAGCGCGCCCAGCGGCGTCGAGCCAGGTCCCGATGCTaGCAGGAAGCTGGAGTCGGCAGGGGACTGCGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: QRAQRRRARSRC*QEAGVGRGLRL Trigger: CAGGCGCAGTCCCCTGCCGACTCCAGCTTCCTGGCAGCATCGGGACCTGGCTCGACGCCGCTGGGCGCGCTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS CCA 72 bp | GCGGCGTCGAGCCAGGTCCCGATGCTGCCAGGAAGCTaGAGTCGGCAGGGGACTGCGCCTGTGACGGCGGAC | + |
|
Preference number: 6 (lower is better) Translates to: AASSQVPMLPGS*SRQGTAPVTAD Trigger: GTCCGCCGTCACAGGCGCAGTCCCCTGCCGACTCCAGCTTCCTGGCAGCATCGGGACCTGGCTCGACGCCGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS TCA 72 bp | GAGATCATGTCGGTGAATCTGGGGTTGTCCGCGCCGTaGGGCCCGGCCAGCGGCGGTTCCAGCGCGCCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: EIMSVNLGLSAP*GPASGGSSAPS Trigger: GCTGGGCGCGCTGGAACCGCCGCTGGCCGGGCCTCACGGCGCGGACAACCCCAGATTCACCGACATGATCTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS TCA 72 bp | CGGGGCTCGGCGTGTCCGGATGCGAGATCATGTCGGTaGATCTGGGGTTGTCCGCGCCGTGAGGCCCGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: RGSACPDARSCR*IWGCPRREARP Trigger: TGGCCGGGCCTCACGGCGCGGACAACCCCAGATTCACCGACATGATCTCGCATCCGGACACGCCGAGCCCCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS CAA 72 bp | TCCTGTGCCAGCTGTTCGCGAATGTGGCGCGTGGGCTaGGGCGTGGCTGCGAAGGCTGCCTTGAGCGTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SCASCSRMWRVG*GVAAKAALSVS Trigger: GGAGACGCTCAAGGCAGCCTTCGCAGCCACGCCCAAGCCCACGCGCCACATTCGCGAACAGCTGGCACAGGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS CCA 72 bp | TTGTCGGTCTCTTTGGGGTCGTCCTGTAACGGATCCTaGAGGTCCGGGGACAAACTGCGGTCCGTACAGGAC | + |
|
Preference number: 6 (lower is better) Translates to: LSVSLGSSCNGS*RSGDKLRSVQD Trigger: GTCCTGTACGGACCGCAGTTTGTCCCCGGACCTCCAGGATCCGTTACAGGACGACCCCAAAGAGACCGACAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS GCA 72 bp | CCTGTGACGGCGGACCGTGCGCGAAGAAATCGTAATTaGCTCCCGGAGCGTAGTAGTCACTTTGGTAGTCTC | + |
|
Preference number: 6 (lower is better) Translates to: PVTADRARRNRN*LPERSSHFGSL Trigger: GAGACTACCAAAGTGACTACTACGCTCCGGGAGGCAATTACGATTTCTTCGCGCACGGTCCGCCGTCACAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS CCA 72 bp | TTTCCTTGTCCGATGAGGTCGAATTGTCGGTCTCTTTaGGGTCGTCCTGTAACGGATCCTGGAGGTCCGGGG | + |
|
Preference number: 6 (lower is better) Translates to: FPCPMRSNCRSL*GRPVTDPGGPG Trigger: CCCCGGACCTCCAGGATCCGTTACAGGACGACCCCAAAGAGACCGACAATTCGACCTCATCGGACAAGGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS CAA 72 bp | GTTTCCTTGTCCGATGAGGTCGAATTGTCGGTCTCTTaGGGGTCGTCCTGTAACGGATCCTGGAGGTCCGGG | + |
|
Preference number: 6 (lower is better) Translates to: VSLSDEVELSVS*GSSCNGSWRSG Trigger: CCCGGACCTCCAGGATCCGTTACAGGACGACCCCAAAGAGACCGACAATTCGACCTCATCGGACAAGGAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS TCA 72 bp | CTTGCGCGCAGCCGGCGCACTTTGTGCCAAAGCGCCTaGAAAAGTCGTTTTTACAGTATAGCTTGCCTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: LARSRRTLCQSA*KSRFYSIACLP Trigger: GGGAAGGCAAGCTATACTGTAAAAACGACTTTTTCAGGCGCTTTGGCACAAAGTGCGCCGGCTGCGCGCAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS CAA 72 bp | TCGTTGTTAGCGGTTTCCTTGTCCGATGAGGTCGAATaGTCGGTCTCTTTGGGGTCGTCCTGTAACGGATCC | + |
|
Preference number: 6 (lower is better) Translates to: SLLAVSLSDEVE*SVSLGSSCNGS Trigger: GGATCCGTTACAGGACGACCCCAAAGAGACCGACAATTCGACCTCATCGGACAAGGAAACCGCTAACAACGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS TCA 72 bp | CACTTCTCCGAGAGGTTGGTTTTGCACTCGCAGCATTaGACACATTTGATATGCCACGCGCGGTCTAGTACG | + |
|
Preference number: 6 (lower is better) Translates to: HFSERLVLHSQH*THLICHARSST Trigger: CGTACTAGACCGCGCGTGGCATATCAAATGTGTTCAATGCTGCGAGTGCAAAACCAACCTCTCGGAGAAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS TCA 72 bp | AGAGGTTGGTTTTGCACTCGCAGCATTGAACACATTTaGTATGCCACGCGCGGTCTAGTACGTTCAGCAGAA | + |
|
Preference number: 6 (lower is better) Translates to: RGWFCTRSIEHI*YATRGLVRSAE Trigger: TTCTGCTGAACGTACTAGACCGCGCGTGGCATATCAAATGTGTTCAATGCTGCGAGTGCAAAACCAACCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS CCA 72 bp | GTAGTAGTCACTTTGGTAGTCTCCGTAATAAGTGTATaGGGTAGACCCCAACATCTCAGACTCGTCCAAGCG | + |
|
Preference number: 6 (lower is better) Translates to: VVVTLVVSVISV*GRPQHLRLVQA Trigger: CGCTTGGACGAGTCTGAGATGTTGGGGTCTACCCCATACACTTATTACGGAGACTACCAAAGTGACTACTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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| CDS CAA 72 bp | GAAATCGTAATTGCCTCCCGGAGCGTAGTAGTCACTTaGGTAGTCTCCGTAATAAGTGTATGGGGTAGACCC | + |
|
Preference number: 6 (lower is better) Translates to: EIVIASRSVVVT*VVSVISVWGRP Trigger: GGGTCTACCCCATACACTTATTACGGAGACTACCAAAGTGACTACTACGCTCCGGGAGGCAATTACGATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031591.10 |
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