Pregenerated sensors for LHX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000247Ensembl transcript IDs: ENSMUST00000000253.6, ENSMUST00000133661.8, ENSMUST00000143783.9, ENSMUST00000176229.2
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGATCTTGCCCCCACAGCCAGCACACAACGCTGCCCGGTCACTGCTaGTGGACGGCATGGTCTAAAGTTCGGGGAACAGAGGCGCTGGCT | + |
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Preference number: 1 (lower is better) Translates to: RSCPHSQHTTLPGHC*WTAWSKVRGTEALA Trigger: AGCCAGCGCCTCTGTTCCCCGAACTTTAGACCATGCCGTCCATCAGCAGTGACCGGGCAGCGTTGTGTGCTGGCTGTGGGGGCAAGATCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| 3UTR-3UTR CCA 90 bp | GCATGTGCCATTGCTTGTCTACTGCCAGCAGGTAGTAGCGGTCAGAGATCTTGCAACAGAGGCGCTGGCTaGCCCCGCCAGGTCCCAGCT | + |
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Preference number: 2 (lower is better) Translates to: ACAIACLLPAGSSGQRSCNRGAG*PRQVPA Trigger: AGCTGGGACCTGGCGGGGCCAGCCAGCGCCTCTGTT...GCAAGATCTCTGACCGCTACTACCTGCTGGCAGTAGACAAGCAATGGCACATGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| 3UTR-3UTR GCA 90 bp | AGCGCATGTGCCATTGCTTGTCTACTGCCAGCAGGTAGTAGCGGTCAGAGATCTGCCAGCACACAACGCTaGCCGGTCACTGCTGATGGA | + |
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Preference number: 2 (lower is better) Translates to: SACAIACLLPAGSSGQRSASTQR*PVTADG Trigger: TCCATCAGCAGTGACCGGGCAGCGTTGTGTGCTGGC...AGATCTCTGACCGCTACTACCTGCTGGCAGTAGACAAGCAATGGCACATGCGCT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| 3UTR-3UTR TCA 90 bp | AGCGCATGTGCCATTGCTTGTCTACTGCCAGCAGGTAGTAGCGGTCAGAGATCTCTGCCCGGTCACTGCTaGTGGACGGCATGGTCTAAA | + |
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Preference number: 2 (lower is better) Translates to: SACAIACLLPAGSSGQRSLPGHC*WTAWSK Trigger: TTTAGACCATGCCGTCCATCAGCAGTGACCGGGCAG...AGATCTCTGACCGCTACTACCTGCTGGCAGTAGACAAGCAATGGCACATGCGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| 3UTR-3UTR GCA 90 bp | CACAGAGAACCGCCTGTAGTAGTCTTCTTTGCAGTAGATGCTGCCATCCTTGCTCAGCGCATGTGCCATTaGTTGTCTACTGCCAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: HREPPVVVFFAVDAAILAQRMCH*LSTASR Trigger: CCTGCTGGCAGTAGACAAGCAATGGCACATGCGCTG...AGCAAGGATGGCAGCATCTACTGCAAAGAAGACTACTACAGGCGGTTCTCTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| 3UTR-3UTR TCA 90 bp | CACAGAGAACCGCCTGTAGTAGTCTTCTTTGCAGTAGATGCTGCCATCCTTGCTGTTCCGACTCCAGGTTaGGCTTGCATTCACAGCACT | + |
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Preference number: 2 (lower is better) Translates to: HREPPVVVFFAVDAAILAVPTPG*ACIHST Trigger: AGTGCTGTGAATGCAAGCTCAACCTGGAGTCGGAAC...AGCAAGGATGGCAGCATCTACTGCAAAGAAGACTACTACAGGCGGTTCTCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| 3UTR-3UTR GCA 90 bp | CACAGAGAACCGCCTGTAGTAGTCTTCTTTGCAGTAGATGCTGCCATCCTTGCTCCATTGCTTGTCTACTaGCAGCAGGTAGTAGCGGTC | + |
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Preference number: 2 (lower is better) Translates to: HREPPVVVFFAVDAAILAPLLVY*QQVVAV Trigger: GACCGCTACTACCTGCTGGCAGTAGACAAGCAATGG...AGCAAGGATGGCAGCATCTACTGCAAAGAAGACTACTACAGGCGGTTCTCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| 3UTR CAA 90 bp | TTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGTaGCAGATATATCTCCCAAGTAATTCCTCAGCACACACCGCTGCG | + |
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Preference number: 2 (lower is better) Translates to: FLAQSTKLYRDTNVV*QIYLPSNSSAHTAA Trigger: CGCAGCGGTGTGTGCTGAGGAATTACTTGGGAGATATATCTGCAACACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| 3UTR CAA 90 bp | TTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTaGTGTTGCAGATATATCTCCCAAGTAATTCCTCAGCACACACCG | + |
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Preference number: 2 (lower is better) Translates to: LFSSLSPQNCTGTQM*CCRYISQVIPQHTP Trigger: CGGTGTGTGCTGAGGAATTACTTGGGAGATATATCTGCAACACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| 3UTR-3UTR GCA 90 bp | GTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAACTTACACAAATGTTGTGTTaGAGATATATCTCCCAAGTA | + |
|
Preference number: 2 (lower is better) Translates to: VFLRHVAVFENTEALSQLTQMLC*RYISQV Trigger: TACTTGGGAGATATATCTGCAACACAACATTTGTGT...AAGTTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| 3UTR-3UTR CCA 90 bp | AATACGGAAGCTCTCAGCCAACTTAAATTATTTGTTGTTTTCCTCGCTCAGTCCCGAGATCCTAAAACGTaGTTAGTTAGTTGCTCAAAC | + |
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Preference number: 2 (lower is better) Translates to: NTEALSQLKLFVVFLAQSRDPKT*LVSCSN Trigger: GTTTGAGCAACTAACTAACCACGTTTTAGGATCTCG...GGACTGAGCGAGGAAAACAACAAATAATTTAAGTTGGCTGAGAGCTTCCGTATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| 3UTR TCA 72 bp | CCCCACAGCCAGCACACAACGCTGCCCGGTCACTGCTaGTGGACGGCATGGTCTAAAGTTCGGGGAACAGAG | + |
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Preference number: 3 (lower is better) Translates to: PHSQHTTLPGHC*WTAWSKVRGTE Trigger: CTCTGTTCCCCGAACTTTAGACCATGCCGTCCATCAGCAGTGACCGGGCAGCGTTGTGTGCTGGCTGTGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| 3UTR-3UTR CAA 90 bp | CACAGAGAACCGCCTGTAGTAGTCTTCTTTGCAGTAGATGCTGCCATCCTTGCTAGTTCCGACTCCAGGTaGAGCTTGCATTCACAGCAC | + |
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Preference number: 3 (lower is better) Translates to: HREPPVVVFFAVDAAILASSDSR*SLHSQH Trigger: GTGCTGTGAATGCAAGCTCAACCTGGAGTCGGAACT...AGCAAGGATGGCAGCATCTACTGCAAAGAAGACTACTACAGGCGGTTCTCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| 3UTR-3UTR CAA 90 bp | TATGAAGATAAAACAGTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGACACAAATGTTGTGTaGCAGATATATCTCCCAAGT | + |
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Preference number: 3 (lower is better) Translates to: YEDKTVFLRHVAVFENTEDTNVV*QIYLPS Trigger: ACTTGGGAGATATATCTGCAACACAACATTTGTGTC...TTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATACTGTTTTATCTTCATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | CAGATATATCTCCCAAGTAATTCCTCAGCACACACCGCTGCGTTAGCCCGACGCCTCCGAGGCGGGCCCTaGCGGCGTCCCTGTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: QIYLPSNSSAHTAALARRLRGGP*RRPCLQ Trigger: CTGCAGACAGGGACGCCGTCAGGGCCCGCCTCGGAG...GCGTCGGGCTAACGCAGCGGTGTGTGCTGAGGAATTACTTGGGAGATATATCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | GCATGTGCCATTGCTTGTCTACTGCCAGCAGGTAGTAGCGGTCAGAGATCTTGCGGTCCATCTCGTCGATaGCCCCGTGCACCTCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: ACAIACLLPAGSSGQRSCGPSRR*PRAPRG Trigger: GCCCCGAGGTGCACGGGGTCATCGACGAGATGGACC...GCAAGATCTCTGACCGCTACTACCTGCTGGCAGTAGACAAGCAATGGCACATGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| CDS-3UTR TCA 90 bp | AGCGCATGTGCCATTGCTTGTCTACTGCCAGCAGGTAGTAGCGGTCAGAGATCTGGTCGATGGCGGAGCTaGTGGCCGGAGCCTCGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SACAIACLLPAGSSGQRSGRWRS*WPEPRS Trigger: AGAGCGAGGCTCCGGCCATCAGCTCCGCCATCGACC...AGATCTCTGACCGCTACTACCTGCTGGCAGTAGACAAGCAATGGCACATGCGCT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| CDS-3UTR GCA 90 bp | GCATGTGCCATTGCTTGTCTACTGCCAGCAGGTAGTAGCGGTCAGAGATCTTGCTCGTCGATGACCCCGTaGACCTCGGGGCCCGACAGA | + |
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Preference number: 4 (lower is better) Translates to: ACAIACLLPAGSSGQRSCSSMTP*TSGPDR Trigger: TCTGTCGGGCCCCGAGGTGCACGGGGTCATCGACGA...GCAAGATCTCTGACCGCTACTACCTGCTGGCAGTAGACAAGCAATGGCACATGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| CDS-3UTR CCA 90 bp | AGCGCATGTGCCATTGCTTGTCTACTGCCAGCAGGTAGTAGCGGTCAGAGATCTCCGGAGCCTCGCTCTTaGCCCTGCGGTCCATCTCGT | + |
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Preference number: 4 (lower is better) Translates to: SACAIACLLPAGSSGQRSPEPRS*PCGPSR Trigger: ACGAGATGGACCGCAGGGCCAAGAGCGAGGCTCCGG...AGATCTCTGACCGCTACTACCTGCTGGCAGTAGACAAGCAATGGCACATGCGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
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| CDS-3UTR TCA 90 bp | CAGATATATCTCCCAAGTAATTCCTCAGCACACACCGCTGCGTTAGCCCGACGCCTGCCCGGTCACTGCTaGTGGACGGCATGGTCGTCT | + |
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Preference number: 4 (lower is better) Translates to: QIYLPSNSSAHTAALARRLPGHC*WTAWSS Trigger: AGACGACCATGCCGTCCATCAGCAGTGACCGGGCAG...GCGTCGGGCTAACGCAGCGGTGTGTGCTGAGGAATTACTTGGGAGATATATCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR GCA 90 bp | GTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAACTTTGCACTCTTAGCTGCTaGGGCTGCGGCTGCCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: VFLRHVAVFENTEALSQLCTLSC*GCGCRR Trigger: GCGGCGGCAGCCGCAGCCGCAGCAGCTAAGAGTGCA...AAGTTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR GCA 90 bp | CTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGTTGCAGATATATCTTAGCTGCTGCGGCTaGGGCTGCCGCCGCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: LAQSTKLYRDTNVVLQIYLSCCG*GCRRCH Trigger: GTGGCAGCGGCGGCAGCCGCAGCCGCAGCAGCTAAG...ATATATCTGCAACACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR CCA 90 bp | ATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGCCGAGATGCCCAGGTaGCAGCGGGCGCAGCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: ICCFPRSVHKTVQGHKCCAEMPR*QRAQRC Trigger: GCAGCGCTGCGCCCGCTGCCACCTGGGCATCTCGGC...ACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR CCA 90 bp | CTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGTTGCAGATATATGGGCTGTGGGGCTCGTaGCCCTCCAGGTTGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LAQSTKLYRDTNVVLQIYGLWGS*PSRLPG Trigger: GCCTGGCAACCTGGAGGGCCACGAGCCCCACAGCCC...ATATATCTGCAACACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | GTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAACTTCTGCAGCGTGGCATCTaGCGTCTTGTCCACGCCCGT | + |
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Preference number: 4 (lower is better) Translates to: VFLRHVAVFENTEALSQLLQRGI*RLVHAR Trigger: ACGGGCGTGGACAAGACGTCAGATGCCACGCTGCAG...AAGTTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR CCA 90 bp | CAGATATATCTCCCAAGTAATTCCTCAGCACACACCGCTGCGTTAGCCCGACGCTTGTCTTTTGGCTGCTaGGGTAGGGCTGGTCACGAT | + |
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Preference number: 4 (lower is better) Translates to: QIYLPSNSSAHTAALARRLSFGC*GRAGHD Trigger: ATCGTGACCAGCCCTACCCCAGCAGCCAAAAGACAA...GCGTCGGGCTAACGCAGCGGTGTGTGCTGAGGAATTACTTGGGAGATATATCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | AATACGGAAGCTCTCAGCCAACTTAAATTATTTGTTGTTTTCCTCGCTCAGTCCGGTCCATCTCGTCGATaGCCCCGTGCACCTCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: NTEALSQLKLFVVFLAQSGPSRR*PRAPRG Trigger: GCCCCGAGGTGCACGGGGTCATCGACGAGATGGACC...GGACTGAGCGAGGAAAACAACAAATAATTTAAGTTGGCTGAGAGCTTCCGTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | GTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAACTTGAAGCTGGTGGTGCTTaGAGGAGGTGCGCATGCGCT | + |
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Preference number: 4 (lower is better) Translates to: VFLRHVAVFENTEALSQLEAGGA*RRCACA Trigger: AGCGCATGCGCACCTCCTTCAAGCACCACCAGCTTC...AAGTTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | ATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGCGTGCTGGAGGGGCTaGGCGAGGCGTTGGACAGCT | + |
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Preference number: 4 (lower is better) Translates to: ICCFPRSVHKTVQGHKCCACWRG*ARRWTA Trigger: AGCTGTCCAACGCCTCGCTCAGCCCCTCCAGCACGC...ACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR GCA 90 bp | CTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGTTGCAGATATATTCGTCGATGACCCCGTaGACCTCGGGGCCCGACAGA | + |
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Preference number: 4 (lower is better) Translates to: LAQSTKLYRDTNVVLQIYSSMTP*TSGPDR Trigger: TCTGTCGGGCCCCGAGGTGCACGGGGTCATCGACGA...ATATATCTGCAACACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR GCA 90 bp | ACAGTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAAGCTGGGTATTCGCCCTaGAGCAGAGCCTCGAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: TVFLRHVAVFENTEALSQAGYSP*SRASKC Trigger: GCACTTCGAGGCTCTGCTGCAGGGCGAATACCCAGC...TTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATACTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR GCA 90 bp | CAGATATATCTCCCAAGTAATTCCTCAGCACACACCGCTGCGTTAGCCCGACGCGTCTTTTGCGCAAGCTaGTTCAAGTCCTTGGCATCG | + |
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Preference number: 4 (lower is better) Translates to: QIYLPSNSSAHTAALARRVFCAS*FKSLAS Trigger: CGATGCCAAGGACTTGAAGCAGCTTGCGCAAAAGAC...GCGTCGGGCTAACGCAGCGGTGTGTGCTGAGGAATTACTTGGGAGATATATCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | TTATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGGTCGATGGCGGAGCTaGTGGCCGGAGCCTCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LFVVFLAQSTKLYRDTNVGRWRS*WPEPRS Trigger: AGAGCGAGGCTCCGGCCATCAGCTCCGCCATCGACC...AACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | CTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGTTGCAGATATATGCGCATCACCATCTCTaGGGCCGAGATGCCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: LAQSTKLYRDTNVVLQIYAHHHL*GRDAQV Trigger: CACCTGGGCATCTCGGCCTCAGAGATGGTGATGCGC...ATATATCTGCAACACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | ACAGTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAAGGTAAGAGTCGTTTGTaGAGGGCTGTGGGGCTCGTG | + |
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Preference number: 4 (lower is better) Translates to: TVFLRHVAVFENTEALSQGKSRL*RAVGLV Trigger: CACGAGCCCCACAGCCCTTCACAAACGACTCTTACC...TTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATACTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR GCA 90 bp | ACAGTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAAAGCGGTCAGAGATCTTaGCCCCACAGCCAGCACACA | + |
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Preference number: 4 (lower is better) Translates to: TVFLRHVAVFENTEALSQSGQRS*PHSQHT Trigger: TGTGTGCTGGCTGTGGGGGCAAGATCTCTGACCGCT...TTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATACTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR CCA 90 bp | ATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTCCGGAGCCTCGCTCTTaGCCCTGCGGTCCATCTCGT | + |
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Preference number: 4 (lower is better) Translates to: ICCFPRSVHKTVQGHKCCPEPRS*PCGPSR Trigger: ACGAGATGGACCGCAGGGCCAAGAGCGAGGCTCCGG...ACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | TTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGTTGCAGATGGAGGACTCTCTTGGTaGGGCCGGTCTTTTGCGCAA | + |
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Preference number: 4 (lower is better) Translates to: FPRSVHKTVQGHKCCVADGGLSW*GRSFAQ Trigger: TTGCGCAAAAGACCGGCCTCACCAAGAGAGTCCTCC...ATCTGCAACACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | GTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAACTTGTAAAAGGTTGCGCCTaGACTTGGCCCGGGCATTCT | + |
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Preference number: 4 (lower is better) Translates to: VFLRHVAVFENTEALSQLVKGCA*TWPGHS Trigger: AGAATGCCCGGGCCAAGTTCAGGCGCAACCTTTTAC...AAGTTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR CCA 90 bp | GTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAACTTATTGTCCGAAGCTGGTaGTGCTTGAAGGAGGTGCGC | + |
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Preference number: 4 (lower is better) Translates to: VFLRHVAVFENTEALSQLIVRSW*CLKEVR Trigger: GCGCACCTCCTTCAAGCACCACCAGCTTCGGACAAT...AAGTTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR CCA 90 bp | GTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAACTTTCCCTGTCTGCAGCGTaGCATCTGACGTCTTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VFLRHVAVFENTEALSQLSLSAA*HLTSCP Trigger: TGGACAAGACGTCAGATGCCACGCTGCAGACAGGGA...AAGTTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR GCA 90 bp | ACAGTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAATTGAGGCAGCGCATGTaGCATTGCTTGTCTACTGCC | + |
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Preference number: 4 (lower is better) Translates to: TVFLRHVAVFENTEALSQLRQRM*HCLSTA Trigger: GGCAGTAGACAAGCAATGGCACATGCGCTGCCTCAA...TTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR GCA 90 bp | AATACGGAAGCTCTCAGCCAACTTAAATTATTTGTTGTTTTCCTCGCTCAGTCCGTCCGAAGCTGGTGGTaGTTGAAGGAGGTGCGCATG | + |
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Preference number: 4 (lower is better) Translates to: NTEALSQLKLFVVFLAQSVRSWW*LKEVRM Trigger: CATGCGCACCTCCTTCAAGCACCACCAGCTTCGGAC...GGACTGAGCGAGGAAAACAACAAATAATTTAAGTTGGCTGAGAGCTTCCGTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR GCA 90 bp | CTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGTTGCAGATATATCGTGGCCCTCCAGGTTaGCAGGCACAGAAGTTAAGA | + |
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Preference number: 4 (lower is better) Translates to: LAQSTKLYRDTNVVLQIYRGPPG*QAQKLR Trigger: TCTTAACTTCTGTGCCTGGCAACCTGGAGGGCCACG...ATATATCTGCAACACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR TCA 90 bp | CTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGTTGCAGATATATTGCATTCACAGCACTTaGGGCAGCGCATGTGCCATT | + |
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Preference number: 4 (lower is better) Translates to: LAQSTKLYRDTNVVLQIYCIHST*GSACAI Trigger: AATGGCACATGCGCTGCCTCAAGTGCTGTGAATGCA...ATATATCTGCAACACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
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| CDS-3UTR GCA 90 bp | TCAGCCAACTTAAATTATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGCCAGCACACAACGCTaGCCGGTCACTGCTGATGGA | + |
|
Preference number: 4 (lower is better) Translates to: SANLNYLLFSSLSPQNCTASTQR*PVTADG Trigger: TCCATCAGCAGTGACCGGGCAGCGTTGTGTGCTGGC...TGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAATAATTTAAGTTGGCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR GCA 90 bp | GTCTTTGAAAATACGGAAGCTCTCAGCCAACTTAAATTATTTGTTGTTTTCCTCCTCGGCCTCCCCTTTTaGACAGTGCCCACGCCGTTG | + |
|
Preference number: 4 (lower is better) Translates to: VFENTEALSQLKLFVVFLLGLPF*TVPTPL Trigger: CAACGGCGTGGGCACTGTGCAAAAGGGGAGGCCGAG...GAGGAAAACAACAAATAATTTAAGTTGGCTGAGAGCTTCCGTATTTTCAAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR GCA 90 bp | AATACGGAAGCTCTCAGCCAACTTAAATTATTTGTTGTTTTCCTCGCTCAGTCCACGCCCGTGTTTTCCTaGCGTAAAAGGTTGCGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: NTEALSQLKLFVVFLAQSTPVFS*RKRLRL Trigger: CAGGCGCAACCTTTTACGGCAGGAAAACACGGGCGT...GGACTGAGCGAGGAAAACAACAAATAATTTAAGTTGGCTGAGAGCTTCCGTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR TCA 90 bp | ATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGTTCCGACTCCAGGTTaGGCTTGCATTCACAGCACT | + |
|
Preference number: 4 (lower is better) Translates to: ICCFPRSVHKTVQGHKCCVPTPG*ACIHST Trigger: AGTGCTGTGAATGCAAGCTCAACCTGGAGTCGGAAC...ACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR GCA 90 bp | TTATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTCAGCGCATGTGCCATTaGTTGTCTACTGCCAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LFVVFLAQSTKLYRDTNVQRMCH*LSTASR Trigger: CCTGCTGGCAGTAGACAAGCAATGGCACATGCGCTG...AACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR GCA 90 bp | TTATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGAGGCCGGTCTTTTaGGCAAGCTGCTTCAAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: LFVVFLAQSTKLYRDTNVVRPVF*ASCFKS Trigger: GGACTTGAAGCAGCTTGCGCAAAAGACCGGCCTCAC...AACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR GCA 90 bp | TTATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTCCATTGCTTGTCTACTaGCAGCAGGTAGTAGCGGTC | + |
|
Preference number: 4 (lower is better) Translates to: LFVVFLAQSTKLYRDTNVPLLVY*QQVVAV Trigger: GACCGCTACTACCTGCTGGCAGTAGACAAGCAATGG...AACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR GCA 90 bp | TTATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGGCATGGTTAAAGTGTaGTGGGTATTCGCCCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LFVVFLAQSTKLYRDTNVGMVKV*WVFALQ Trigger: CTGCAGGGCGAATACCCAGCACACTTTAACCATGCC...AACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CCA 90 bp | AATACGGAAGCTCTCAGCCAACTTAAATTATTTGTTGTTTTCCTCGCTCAGTCCATGGTTAAAGTGTGCTaGGTATTCGCCCTGCAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: NTEALSQLKLFVVFLAQSMVKVC*VFALQQ Trigger: CTGCTGCAGGGCGAATACCCAGCACACTTTAACCAT...GGACTGAGCGAGGAAAACAACAAATAATTTAAGTTGGCTGAGAGCTTCCGTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CCA 90 bp | TTATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTTTCATTGTCCGAAGCTaGTGGTGCTTGAAGGAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: LFVVFLAQSTKLYRDTNVFIVRS*WCLKEV Trigger: CACCTCCTTCAAGCACCACCAGCTTCGGACAATGAA...AACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| 3UTR CAA 72 bp | CAGTCCACAAAACTGTACAGGGACACAAATGTTGTGTaGCAGATATATCTCCCAAGTAATTCCTCAGCACAC | + |
|
Preference number: 4 (lower is better) Translates to: QSTKLYRDTNVV*QIYLPSNSSAH Trigger: GTGTGCTGAGGAATTACTTGGGAGATATATCTGCAACACAACATTTGTGTCCCTGTACAGTTTTGTGGACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR GCA 90 bp | TCAGCCAACTTAAATTATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACATGTAGTAGTCTTCTTTaGAGTAGATGCTGCCATCCT | + |
|
Preference number: 4 (lower is better) Translates to: SANLNYLLFSSLSPQNCTCSSLL*SRCCHP Trigger: AGGATGGCAGCATCTACTGCAAAGAAGACTACTACA...TGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAATAATTTAAGTTGGCTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS TCA 90 bp | GCCGCGCGCCTACCGTCTCCGTGTCGCCGCGGTCGATGGCGGAGCTaGTGGCCGGAGCCTCGCTCTTGGCCCTGCGGTCCATCTCGTCGA | + |
|
Preference number: 5 (lower is better) Translates to: AARLPSPCRRGRWRS*WPEPRSWPCGPSRR Trigger: TCGACGAGATGGACCGCAGGGCCAAGAGCGAGGCTCCGGCCATCAGCTCCGCCATCGACCGCGGCGACACGGAGACGGTAGGCGCGCGGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
||
| CDS TCA 90 bp | TGGACGGCATGGTCGTCTCCGTGTCGCCGCGGTCGATGGCGGAGCTaGTGGCCGGAGCCTCGCTCTTGGCCCTGCGGTCCATCTCGTCGA | + |
|
Preference number: 5 (lower is better) Translates to: WTAWSSPCRRGRWRS*WPEPRSWPCGPSRR Trigger: TCGACGAGATGGACCGCAGGGCCAAGAGCGAGGCTCCGGCCATCAGCTCCGCCATCGACCGCGGCGACACGGAGACGACCATGCCGTCCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS TCA 90 bp | GCCCACGCCGTTGTAGTAGGGAAGACCCAGCGGATTAGCCCCGGCTaGGCCCAATCCTGCACTCTTAGCTGCTGCGGCTGCGGCTGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: AHAVVVGKTQRISPG*AQSCTLSCCGCGCR Trigger: GCGGCAGCCGCAGCCGCAGCAGCTAAGAGTGCAGGATTGGGCTCAGCCGGGGCTAATCCGCTGGGTCTTCCCTACTACAACGGCGTGGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000000253.6 ENSMUST00000133661.8 ENSMUST00000143783.9 |
||
| CDS GCA 90 bp | GAGGCGTTGGACAGCTCCGAGGCGGGCCCTGACGGCGTCCCTGTCTaGAGCGTGGCATCTGACGTCTTGTCCACGCCCGTGTTTTCCTGC | + |
|
Preference number: 5 (lower is better) Translates to: EALDSSEAGPDGVPV*SVASDVLSTPVFSC Trigger: GCAGGAAAACACGGGCGTGGACAAGACGTCAGATGCCACGCTGCAGACAGGGACGCCGTCAGGGCCCGCCTCGGAGCTGTCCAACGCCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000143783.9 |
||
| CDS CCA 90 bp | GGCTGCGGCTGCCGCCGCTGCCACGTCGGCATGGTTAAAGTGTGCTaGGTATTCGCCCTGCAGCAGAGCCTCGAAGTGCAAGCGGCAATA | + |
|
Preference number: 5 (lower is better) Translates to: GCGCRRCHVGMVKVC*VFALQQSLEVQAAI Trigger: TATTGCCGCTTGCACTTCGAGGCTCTGCTGCAGGGCGAATACCCAGCACACTTTAACCATGCCGACGTGGCAGCGGCGGCAGCCGCAGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000253.6 ENSMUST00000133661.8 ENSMUST00000143783.9 |
||
| CDS CCA 90 bp | TGGACAGCTCCGAGGCGGGCCCTGACGGCGTCCCTGTCTGCAGCGTaGCATCTGACGTCTTGTCCACGCCCGTGTTTTCCTGCCGTAAAA | + |
|
Preference number: 5 (lower is better) Translates to: WTAPRRALTASLSAA*HLTSCPRPCFPAVK Trigger: TTTTACGGCAGGAAAACACGGGCGTGGACAAGACGTCAGATGCCACGCTGCAGACAGGGACGCCGTCAGGGCCCGCCTCGGAGCTGTCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000143783.9 |
||
| CDS-3UTR CAA 90 bp | GCATGTGCCATTGCTTGTCTACTGCCAGCAGGTAGTAGCGGTCAGAGATCTTGCGCCGGAGCCTCGCTCTaGGCCCTGCGGTCCATCTCG | + |
|
Preference number: 5 (lower is better) Translates to: ACAIACLLPAGSSGQRSCAGASL*ALRSIS Trigger: CGAGATGGACCGCAGGGCCAAGAGCGAGGCTCCGGC...GCAAGATCTCTGACCGCTACTACCTGCTGGCAGTAGACAAGCAATGGCACATGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
||
| CDS-3UTR CAA 90 bp | CAGATATATCTCCCAAGTAATTCCTCAGCACACACCGCTGCGTTAGCCCGACGCGCAGCGCATGTGCCATaGCTTGTCTACTGCCAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: QIYLPSNSSAHTAALARRAAHVP*LVYCQQ Trigger: CTGCTGGCAGTAGACAAGCAATGGCACATGCGCTGC...GCGTCGGGCTAACGCAGCGGTGTGTGCTGAGGAATTACTTGGGAGATATATCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | CAGATATATCTCCCAAGTAATTCCTCAGCACACACCGCTGCGTTAGCCCGACGCGTGGCATCTGACGTCTaGTCCACGCCCGTGTTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: QIYLPSNSSAHTAALARRVASDV*STPVFS Trigger: GGAAAACACGGGCGTGGACAAGACGTCAGATGCCAC...GCGTCGGGCTAACGCAGCGGTGTGTGCTGAGGAATTACTTGGGAGATATATCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | ACAGTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAACGAAGCTGGTGGTGCTaGAAGGAGGTGCGCATGCGC | + |
|
Preference number: 5 (lower is better) Translates to: TVFLRHVAVFENTEALSQRSWWC*KEVRMR Trigger: GCGCATGCGCACCTCCTTCAAGCACCACCAGCTTCG...TTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | TTATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGCCGGAGCCTCGCTCTaGGCCCTGCGGTCCATCTCG | + |
|
Preference number: 5 (lower is better) Translates to: LFVVFLAQSTKLYRDTNVAGASL*ALRSIS Trigger: CGAGATGGACCGCAGGGCCAAGAGCGAGGCTCCGGC...AACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | TCTTTGAAAATACGGAAGCTCTCAGCCAACTTAAATTATTTGTTGTTTTCCTCGGGGCTGAGCGAGGCGTaGGACAGCTCCGAGGCGGGC | + |
|
Preference number: 5 (lower is better) Translates to: SLKIRKLSANLNYLLFSSGLSEA*DSSEAG Trigger: GCCCGCCTCGGAGCTGTCCAACGCCTCGCTCAGCCC...CGAGGAAAACAACAAATAATTTAAGTTGGCTGAGAGCTTCCGTATTTTCAAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | AATACGGAAGCTCTCAGCCAACTTAAATTATTTGTTGTTTTCCTCGCTCAGTCCTCTCGGCCTCCCCTTTaGCACAGTGCCCACGCCGTT | + |
|
Preference number: 5 (lower is better) Translates to: NTEALSQLKLFVVFLAQSSRPPL*HSAHAV Trigger: AACGGCGTGGGCACTGTGCAAAAGGGGAGGCCGAGA...GGACTGAGCGAGGAAAACAACAAATAATTTAAGTTGGCTGAGAGCTTCCGTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | TTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAACTTAAAGGTGAGGCCGGTCTTTaGCGCAAGCTGCTTCAAGTC | + |
|
Preference number: 5 (lower is better) Translates to: FLRHVAVFENTEALSQLKGEAGL*RKLLQV Trigger: GACTTGAAGCAGCTTGCGCAAAAGACCGGCCTCACC...TTTAAGTTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | TTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTGTTGCAGATTCGTGGCCCTCCAGGTaGCCAGGCACAGAAGTTAAG | + |
|
Preference number: 5 (lower is better) Translates to: FPRSVHKTVQGHKCCVADSWPSR*PGTEVK Trigger: CTTAACTTCTGTGCCTGGCAACCTGGAGGGCCACGA...ATCTGCAACACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | GTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAACTTGACTCCAGGTTGAGCTaGCATTCACAGCACTTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: VFLRHVAVFENTEALSQLDSRLS*HSQHLR Trigger: CCTCAAGTGCTGTGAATGCAAGCTCAACCTGGAGTC...AAGTTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | ACAGTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAGCTCTCAGCCAAAGTTCCGACTCCAGGTaGAGCTTGCATTCACAGCAC | + |
|
Preference number: 5 (lower is better) Translates to: TVFLRHVAVFENTEALSQSSDSR*SLHSQH Trigger: GTGCTGTGAATGCAAGCTCAACCTGGAGTCGGAACT...TTGGCTGAGAGCTTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | AATACGGAAGCTCTCAGCCAACTTAAATTATTTGTTGTTTTCCTCGCTCAGTCCAGGTGCGCATGCGCTTaGTCTTTTGGCTGCTGGGGT | + |
|
Preference number: 5 (lower is better) Translates to: NTEALSQLKLFVVFLAQSRCACA*SFGCWG Trigger: ACCCCAGCAGCCAAAAGACAAAGCGCATGCGCACCT...GGACTGAGCGAGGAAAACAACAAATAATTTAAGTTGGCTGAGAGCTTCCGTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | TCAGCCAACTTAAATTATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACATCCTGCCGTAAAAGGTaGCGCCTGAACTTGGCCCGG | + |
|
Preference number: 5 (lower is better) Translates to: SANLNYLLFSSLSPQNCTSCRKR*RLNLAR Trigger: CCGGGCCAAGTTCAGGCGCAACCTTTTACGGCAGGA...TGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAATAATTTAAGTTGGCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | ATTTGTTGTTTTCCTCGCTCAGTCCACAAAACTGTACAGGGACACAAATGTTGTTTGCATTCACAGCACTaGAGGCAGCGCATGTGCCAT | + |
|
Preference number: 5 (lower is better) Translates to: ICCFPRSVHKTVQGHKCCLHSQH*RQRMCH Trigger: ATGGCACATGCGCTGCCTCAAGTGCTGTGAATGCAA...ACAACATTTGTGTCCCTGTACAGTTTTGTGGACTGAGCGAGGAAAACAACAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | TATGAAGATAAAACAGTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAACCTGGAGGACTCTCTaGGTGAGGCCGGTCTTTTGC | + |
|
Preference number: 5 (lower is better) Translates to: YEDKTVFLRHVAVFENTETWRTL*VRPVFC Trigger: GCAAAAGACCGGCCTCACCAAGAGAGTCCTCCAGGT...TTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATACTGTTTTATCTTCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | TATGAAGATAAAACAGTATTCCTAAGGCACGTGGCAGTCTTTGAAAATACGGAAAGCTGCTTCAAGTCCTaGGCATCGGGATTGTGGTTA | + |
|
Preference number: 5 (lower is better) Translates to: YEDKTVFLRHVAVFENTESCFKS*ASGLWL Trigger: TAACCACAATCCCGATGCCAAGGACTTGAAGCAGCT...TTCCGTATTTTCAAAGACTGCCACGTGCCTTAGGAATACTGTTTTATCTTCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS-3UTR CAA 90 bp | GTCTTTGAAAATACGGAAGCTCTCAGCCAACTTAAATTATTTGTTGTTTTCCTCCAAAGTAAGACTTCATaGTCCGAAGCTGGTGGTGCT | + |
|
Preference number: 5 (lower is better) Translates to: VFENTEALSQLKLFVVFLQSKTS*SEAGGA Trigger: AGCACCACCAGCTTCGGACAATGAAGTCTTACTTTG...GAGGAAAACAACAAATAATTTAAGTTGGCTGAGAGCTTCCGTATTTTCAAAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS CAA 90 bp | GTGTCGCCGCGGTCGATGGCGGAGCTGATGGCCGGAGCCTCGCTCTaGGCCCTGCGGTCCATCTCGTCGATGACCCCGTGCACCTCGGGG | + |
|
Preference number: 6 (lower is better) Translates to: VSPRSMAELMAGASL*ALRSISSMTPCTSG Trigger: CCCCGAGGTGCACGGGGTCATCGACGAGATGGACCGCAGGGCCAAGAGCGAGGCTCCGGCCATCAGCTCCGCCATCGACCGCGGCGACAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000176229.2 |
||
| CDS TCA 72 bp | TGGTCGTCTCCGTGTCGCCGCGGTCGATGGCGGAGCTaGTGGCCGGAGCCTCGCTCTTGGCCCTGCGGTCCA | + |
|
Preference number: 6 (lower is better) Translates to: WSSPCRRGRWRS*WPEPRSWPCGP Trigger: TGGACCGCAGGGCCAAGAGCGAGGCTCCGGCCATCAGCTCCGCCATCGACCGCGGCGACACGGAGACGACCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS TCA 72 bp | CTACCGTCTCCGTGTCGCCGCGGTCGATGGCGGAGCTaGTGGCCGGAGCCTCGCTCTTGGCCCTGCGGTCCA | + |
|
Preference number: 6 (lower is better) Translates to: LPSPCRRGRWRS*WPEPRSWPCGP Trigger: TGGACCGCAGGGCCAAGAGCGAGGCTCCGGCCATCAGCTCCGCCATCGACCGCGGCGACACGGAGACGGTAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176229.2 |
||
| CDS CAA 72 bp | AGGGTTGTAGGCGTGCTGGAGGGGCTGAGCGAGGCGTaGGACAGCTCCGAGGCGGGCCCTGACGGCGTCCCT | + |
|
Preference number: 6 (lower is better) Translates to: RVVGVLEGLSEA*DSSEAGPDGVP Trigger: AGGGACGCCGTCAGGGCCCGCCTCGGAGCTGTCCAACGCCTCGCTCAGCCCCTCCAGCACGCCTACAACCCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000143783.9 |
||
| CDS GCA 72 bp | GACAGCTCCGAGGCGGGCCCTGACGGCGTCCCTGTCTaGAGCGTGGCATCTGACGTCTTGTCCACGCCCGTG | + |
|
Preference number: 6 (lower is better) Translates to: DSSEAGPDGVPV*SVASDVLSTPV Trigger: CACGGGCGTGGACAAGACGTCAGATGCCACGCTGCAGACAGGGACGCCGTCAGGGCCCGCCTCGGAGCTGTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000143783.9 |
||
| CDS CAA 72 bp | CGGTCGATGGCGGAGCTGATGGCCGGAGCCTCGCTCTaGGCCCTGCGGTCCATCTCGTCGATGACCCCGTGC | + |
|
Preference number: 6 (lower is better) Translates to: RSMAELMAGASL*ALRSISSMTPC Trigger: GCACGGGGTCATCGACGAGATGGACCGCAGGGCCAAGAGCGAGGCTCCGGCCATCAGCTCCGCCATCGACCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000176229.2 |
||
| CDS CAA 90 bp | AAGTCTGTGAGGGTTGTAGGCGTGCTGGAGGGGCTGAGCGAGGCGTaGGACAGCTCCGAGGCGGGCCCTGACGGCGTCCCTGTCTGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: KSVRVVGVLEGLSEA*DSSEAGPDGVPVCS Trigger: GCTGCAGACAGGGACGCCGTCAGGGCCCGCCTCGGAGCTGTCCAACGCCTCGCTCAGCCCCTCCAGCACGCCTACAACCCTCACAGACTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000143783.9 |
||
| CDS TCA 72 bp | GAGCCTCGCTCTTGGCCCTGCGGTCCATCTCGTCGATaGCCCCGTGCACCTCGGGGCCCGACAGACTGTGGA | + |
|
Preference number: 6 (lower is better) Translates to: EPRSWPCGPSRR*PRAPRGPTDCG Trigger: TCCACAGTCTGTCGGGCCCCGAGGTGCACGGGGTCATCGACGAGATGGACCGCAGGGCCAAGAGCGAGGCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000176229.2 |
||
| CDS TCA 72 bp | CCCCACAGCCAGCACACAACGCTGCCCGGTCACTGCTaGTGGACGGCATGGTCGTCTCCGTGTCGCCGCGGT | + |
|
Preference number: 6 (lower is better) Translates to: PHSQHTTLPGHC*WTAWSSPCRRG Trigger: ACCGCGGCGACACGGAGACGACCATGCCGTCCATCAGCAGTGACCGGGCAGCGTTGTGTGCTGGCTGTGGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000253.6 |
||
| CDS GCA 72 bp | GCCCAATCCTGCACTCTTAGCTGCTGCGGCTGCGGCTaGCGCCGCTGCCACGTCGGCATGGTTAAAGTGTGC | + |
|
Preference number: 6 (lower is better) Translates to: AQSCTLSCCGCG*RRCHVGMVKVC Trigger: GCACACTTTAACCATGCCGACGTGGCAGCGGCGGCAGCCGCAGCCGCAGCAGCTAAGAGTGCAGGATTGGGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000253.6 ENSMUST00000133661.8 ENSMUST00000143783.9 |
||
| CDS GCA 72 bp | GGCTGCCGCCGCTGCCACGTCGGCATGGTTAAAGTGTaGTGGGTATTCGCCCTGCAGCAGAGCCTCGAAGTG | + |
|
Preference number: 6 (lower is better) Translates to: GCRRCHVGMVKV*WVFALQQSLEV Trigger: CACTTCGAGGCTCTGCTGCAGGGCGAATACCCAGCACACTTTAACCATGCCGACGTGGCAGCGGCGGCAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000253.6 ENSMUST00000133661.8 ENSMUST00000143783.9 |
||
| CDS CAA 90 bp | GCGGGCCCTGACGGCGTCCCTGTCTGCAGCGTGGCATCTGACGTCTaGTCCACGCCCGTGTTTTCCTGCCGTAAAAGGTTGCGCCTGAAC | + |
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Preference number: 6 (lower is better) Translates to: AGPDGVPVCSVASDV*STPVFSCRKRLRLN Trigger: GTTCAGGCGCAACCTTTTACGGCAGGAAAACACGGGCGTGGACAAGACGTCAGATGCCACGCTGCAGACAGGGACGCCGTCAGGGCCCGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000143783.9 |
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| CDS CAA 90 bp | ATCTGCCCCGGGTCCTGGACTCTTGCGCTTTCTCGGCCTCCCCTTTaGCACAGTGCCCACGCCGTTGTAGTAGGGAAGACCCAGCGGATT | + |
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Preference number: 6 (lower is better) Translates to: ICPGSWTLALSRPPL*HSAHAVVVGKTQRI Trigger: AATCCGCTGGGTCTTCCCTACTACAACGGCGTGGGCACTGTGCAAAAGGGGAGGCCGAGAAAGCGCAAGAGTCCAGGACCCGGGGCAGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000143783.9 |
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| CDS TCA 72 bp | GTTGTAGTAGGGAAGACCCAGCGGATTAGCCCCGGCTaGGCCCAATCCTGCACTCTTAGCTGCTGCGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: VVVGKTQRISPG*AQSCTLSCCGC Trigger: GCAGCCGCAGCAGCTAAGAGTGCAGGATTGGGCTCAGCCGGGGCTAATCCGCTGGGTCTTCCCTACTACAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000000253.6 ENSMUST00000133661.8 ENSMUST00000143783.9 |
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| CDS CCA 72 bp | TGCCGCCGCTGCCACGTCGGCATGGTTAAAGTGTGCTaGGTATTCGCCCTGCAGCAGAGCCTCGAAGTGCAA | + |
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Preference number: 6 (lower is better) Translates to: CRRCHVGMVKVC*VFALQQSLEVQ Trigger: TTGCACTTCGAGGCTCTGCTGCAGGGCGAATACCCAGCACACTTTAACCATGCCGACGTGGCAGCGGCGGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000253.6 ENSMUST00000133661.8 ENSMUST00000143783.9 |
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| CDS CAA 72 bp | GGGTCCTGGACTCTTGCGCTTTCTCGGCCTCCCCTTTaGCACAGTGCCCACGCCGTTGTAGTAGGGAAGACC | + |
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Preference number: 6 (lower is better) Translates to: GSWTLALSRPPL*HSAHAVVVGKT Trigger: GGTCTTCCCTACTACAACGGCGTGGGCACTGTGCAAAAGGGGAGGCCGAGAAAGCGCAAGAGTCCAGGACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000000253.6 ENSMUST00000133661.8 ENSMUST00000143783.9 |
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| CDS GCA 72 bp | GACTCTTGCGCTTTCTCGGCCTCCCCTTTTGCACAGTaGCCACGCCGTTGTAGTAGGGAAGACCCAGCGGAT | + |
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Preference number: 6 (lower is better) Translates to: DSCAFSASPFAQ*PRRCSREDPAD Trigger: ATCCGCTGGGTCTTCCCTACTACAACGGCGTGGGCACTGTGCAAAAGGGGAGGCCGAGAAAGCGCAAGAGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000000253.6 ENSMUST00000133661.8 ENSMUST00000143783.9 |
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| CDS GCA 72 bp | GTGGCATCTGACGTCTTGTCCACGCCCGTGTTTTCCTaGCGTAAAAGGTTGCGCCTGAACTTGGCCCGGGCA | + |
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Preference number: 6 (lower is better) Translates to: VASDVLSTPVFS*RKRLRLNLARA Trigger: TGCCCGGGCCAAGTTCAGGCGCAACCTTTTACGGCAGGAAAACACGGGCGTGGACAAGACGTCAGATGCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000143783.9 |
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| CDS CAA 72 bp | GACGGCGTCCCTGTCTGCAGCGTGGCATCTGACGTCTaGTCCACGCCCGTGTTTTCCTGCCGTAAAAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: DGVPVCSVASDV*STPVFSCRKRL Trigger: CAACCTTTTACGGCAGGAAAACACGGGCGTGGACAAGACGTCAGATGCCACGCTGCAGACAGGGACGCCGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000143783.9 |
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| CDS CCA 72 bp | TTGGTAAGAGTCGTTTGTGAAGGGCTGTGGGGCTCGTaGCCCTCCAGGTTGCCAGGCACAGAAGTTAAGACT | + |
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Preference number: 6 (lower is better) Translates to: LVRVVCEGLWGS*PSRLPGTEVKT Trigger: AGTCTTAACTTCTGTGCCTGGCAACCTGGAGGGCCACGAGCCCCACAGCCCTTCACAAACGACTCTTACCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000253.6 ENSMUST00000143783.9 |
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