Pregenerated sensors for LHX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018698Ensembl transcript IDs: ENSMUST00000018842.14, ENSMUST00000092827.3, ENSMUST00000184646.3
Found 125 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCAGCTGTCCAAGACGTCTTCCCATTAGTCAGAGGAACCGCTGGTaGAGTCTGTCCATGGATCCAGGTCATGAAGGTGGGGATAGCTCG | + |
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Preference number: 1 (lower is better) Translates to: FSCPRRLPISQRNRW*SLSMDPGHEGGDSS Trigger: CGAGCTATCCCCACCTTCATGACCTGGATCCATGGACAGACTCCACCAGCGGTTCCTCTGACTAATGGGAAGACGTCTTGGACAGCTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR-3UTR TCA 90 bp | ACCATCCTGTGGAGAGAACGTGAGTGTGAGTGTGTGTGTGTGAGTGTATGTATGACTGGTCCCCGAGGCTaGAGGAAGTGGAGCAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: TILWRERECECVCVSVCMTGPRG*RKWSRR Trigger: CCTCCTGCTCCACTTCCTTCAGCCTCGGGGACCAGT...CATACATACACTCACACACACACACTCACACTCACGTTCTCTCCACAGGATGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR CAA 90 bp | GTGTGGATATACCAGCTCTACTGTGAGGCGGATTTGGATCCTATTTaGGACCCCCTTTGCTATCCAGTCTCCCCAAACAGACTGGTCCCC | + |
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Preference number: 2 (lower is better) Translates to: VWIYQLYCEADLDPI*DPLCYPVSPNRLVP Trigger: GGGGACCAGTCTGTTTGGGGAGACTGGATAGCAAAGGGGGTCCAAAATAGGATCCAAATCCGCCTCACAGTAGAGCTGGTATATCCACAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR-3UTR GCA 90 bp | ACTAAGAAGGGATCTCCCAAAACTAGAACTAGAACCCTCTGGACTGGAGCGCCCCCCAGTTTTGCGCTTTaGCAGCCAGTGTGTGGATAT | + |
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Preference number: 2 (lower is better) Translates to: TKKGSPKTRTRTLWTGAPPSFAL*QPVCGY Trigger: ATATCCACACACTGGCTGGCAAAGCGCAAAACTGGG...GGGCGCTCCAGTCCAGAGGGTTCTAGTTCTAGTTTTGGGAGATCCCTTCTTAGT 51% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR-3UTR CCA 90 bp | ACTAAGAAGGGATCTCCCAAAACTAGAACTAGAACCCTCTGGACTGGAGCGCCCACTGTGAGGCGGATTTaGATCCTATTTTGGACCCCC | + |
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Preference number: 2 (lower is better) Translates to: TKKGSPKTRTRTLWTGAPTVRRI*ILFWTP Trigger: GGGGGTCCAAAATAGGATCCAAATCCGCCTCACAGT...GGGCGCTCCAGTCCAGAGGGTTCTAGTTCTAGTTTTGGGAGATCCCTTCTTAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR CAA 90 bp | CCTGATGCACAGCAGGTCGGTGTTTCTGAAGCTATTAAGAGTTTGTaGTCATCGCTGAACTCTGAGACAACACTAAGAAGGGATCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: PDAQQVGVSEAIKSL*SSLNSETTLRRDLP Trigger: TGGGAGATCCCTTCTTAGTGTTGTCTCAGAGTTCAGCGATGACAACAAACTCTTAATAGCTTCAGAAACACCGACCTGCTGTGCATCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR CAA 90 bp | CCACCTGATGCACAGCAGGTCGGTGTTTCTGAAGCTATTAAGAGTTaGTTGTCATCGCTGAACTCTGAGACAACACTAAGAAGGGATCTC | + |
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Preference number: 2 (lower is better) Translates to: PPDAQQVGVSEAIKS*LSSLNSETTLRRDL Trigger: GAGATCCCTTCTTAGTGTTGTCTCAGAGTTCAGCGATGACAACAAACTCTTAATAGCTTCAGAAACACCGACCTGCTGTGCATCAGGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR-3UTR CCA 90 bp | TGTCTGAATATCATGGTTTTTCCTTTGCCTCGTGTAAACAACACCTTTTTACATGGTGGAGTCTGTCCATaGATCCAGGTCATGAAGGTG | + |
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Preference number: 2 (lower is better) Translates to: CLNIMVFPLPRVNNTFLHGGVCP*IQVMKV Trigger: CACCTTCATGACCTGGATCCATGGACAGACTCCACC...ATGTAAAAAGGTGTTGTTTACACGAGGCAAAGGAAAAACCATGATATTCAGACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR-3UTR TCA 90 bp | ATCATGGTTTTTCCTTTGCCTCGTGTAAACAACACCTTTTTACATACTAGCACAATACCAGCTCTACTGTaGGGCGGATTTGGATCCTAT | + |
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Preference number: 2 (lower is better) Translates to: IMVFPLPRVNNTFLHTSTIPALL*GGFGSY Trigger: ATAGGATCCAAATCCGCCTCACAGTAGAGCTGGTAT...TGTGCTAGTATGTAAAAAGGTGTTGTTTACACGAGGCAAAGGAAAAACCATGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR CAA 90 bp | AGAGAAGGAGAGAGAGAGGGAGAGAGAGATGTTAAGGTAGAAGAGTaGATACTGAGGGCTTTACATTTAGAATTTTGCAATTTTGGCAAA | + |
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Preference number: 2 (lower is better) Translates to: REGEREGERDVKVEE*ILRALHLEFCNFGK Trigger: TTTGCCAAAATTGCAAAATTCTAAATGTAAAGCCCTCAGTATCAACTCTTCTACCTTAACATCTCTCTCTCCCTCTCTCTCTCCTTCTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR CCA 72 bp | CAGAGCGCCTCTAGGAAGGTCTCGGTCCCAGCCTCCTaGCATTGCCCAGGACTGATCGAGGCGAGGCTTCAG | + |
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Preference number: 3 (lower is better) Translates to: QSASRKVSVPAS*HCPGLIEARLQ Trigger: CTGAAGCCTCGCCTCGATCAGTCCTGGGCAATGCCAGGAGGCTGGGACCGAGACCTTCCTAGAGGCGCTCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR CCA 72 bp | GACTGGAGCGCCCCTGACATCTTTTCCTTCCTCATCTaGCAGAGCGCCTCTAGGAAGGTCTCGGTCCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: DWSAPDIFSFLI*QSASRKVSVPA Trigger: GGCTGGGACCGAGACCTTCCTAGAGGCGCTCTGCCAGATGAGGAAGGAAAAGATGTCAGGGGCGCTCCAGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR CCA 72 bp | CCGGAGCCCCAGTTTTGCGCTTTGCCAGCCAGTGTGTaGATATACCAGCTCTACTGTGAGGCGGATTTGGAT | + |
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Preference number: 3 (lower is better) Translates to: PEPQFCALPASV*IYQLYCEADLD Trigger: ATCCAAATCCGCCTCACAGTAGAGCTGGTATATCCACACACTGGCTGGCAAAGCGCAAAACTGGGGCTCCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR CCA 72 bp | CCAAGACGTCTTCCCATTAGTCAGAGGAACCGCTGGTaGAGTCTGTCCATGGATCCAGGTCATGAAGGTGGG | + |
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Preference number: 3 (lower is better) Translates to: PRRLPISQRNRW*SLSMDPGHEGG Trigger: CCCACCTTCATGACCTGGATCCATGGACAGACTCCACCAGCGGTTCCTCTGACTAATGGGAAGACGTCTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR TCA 72 bp | AAACTAGAACTAGAACCCTCTGGACTGGAGCGCCCCTaGCATCTTTTCCTTCCTCATCTGGCAGAGCGCCTC | + |
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Preference number: 3 (lower is better) Translates to: KLELEPSGLERP*HLFLPHLAERL Trigger: GAGGCGCTCTGCCAGATGAGGAAGGAAAAGATGTCAGGGGCGCTCCAGTCCAGAGGGTTCTAGTTCTAGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR CCA 72 bp | TGTCCAAGACGTCTTCCCATTAGTCAGAGGAACCGCTaGTGGAGTCTGTCCATGGATCCAGGTCATGAAGGT | + |
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Preference number: 3 (lower is better) Translates to: CPRRLPISQRNR*WSLSMDPGHEG Trigger: ACCTTCATGACCTGGATCCATGGACAGACTCCACCAGCGGTTCCTCTGACTAATGGGAAGACGTCTTGGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR TCA 72 bp | TTTGCCAGCCAGTGTGTGGATATACCAGCTCTACTGTaGGGCGGATTTGGATCCTATTTTGGACCCCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: FASQCVDIPALL*GGFGSYFGPPL Trigger: CAAAGGGGGTCCAAAATAGGATCCAAATCCGCCTCACAGTAGAGCTGGTATATCCACACACTGGCTGGCAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR CCA 72 bp | GTGTGTGGATATACCAGCTCTACTGTGAGGCGGATTTaGATCCTATTTTGGACCCCCTTTGCTATCCAGTCT | + |
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Preference number: 3 (lower is better) Translates to: VCGYTSSTVRRI*ILFWTPFAIQS Trigger: AGACTGGATAGCAAAGGGGGTCCAAAATAGGATCCAAATCCGCCTCACAGTAGAGCTGGTATATCCACACAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| 3UTR-3UTR CAA 90 bp | TGTCTGAATATCATGGTTTTTCCTTTGCCTCGTGTAAACAACACCTTTTTACATGATTTGGATCCTATTTaGGACCCCCTTTGCTATCCA | + |
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Preference number: 3 (lower is better) Translates to: CLNIMVFPLPRVNNTFLHDLDPI*DPLCYP Trigger: TGGATAGCAAAGGGGGTCCAAAATAGGATCCAAATC...ATGTAAAAAGGTGTTGTTTACACGAGGCAAAGGAAAAACCATGATATTCAGACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR TCA 90 bp | TCTGAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGAGGGGCCGTTGGGGATaGGTTCGCCCGGCTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: SEIKARLCTTTSSRGPCERGRWG*VRPAPG Trigger: GCCTGGAGCCGGGCGAACTCATCCCCAACGGCCCCT...CTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR TCA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCTCACTGGAAGGGTGGTaGCCAGGCAGCGGGTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: NKSSSLYNHELPWPMRDPSLEGW*PGSGWS Trigger: GGACCACCCGCTGCCTGGTCACCACCCTTCCAGTGA...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR GCA 90 bp | GCATTGCCCAGGACTGATCGAGGCGAGGCTTCAGCTGTCCAAGACGTCTTCCCAGCATCCGACGAGGACTaGGGAAAAAGGCGTGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: ALPRTDRGEASAVQDVFPASDED*GKRRGA Trigger: GGCGCCACGCCTTTTTCCGCAGTCCTCGTCGGATGC...TGGGAAGACGTCTTGGACAGCTGAAGCCTCGCCTCGATCAGTCCTGGGCAATGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR TCA 90 bp | GCTTTGCCAGCCAGTGTGTGGATATACCAGCTCTACTGTGAGGCGGATTTGGATAGGGGCCGTTGGGGATaGGTTCGCCCGGCTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: ALPASVWIYQLYCEADLDRGRWG*VRPAPG Trigger: GCCTGGAGCCGGGCGAACTCATCCCCAACGGCCCCT...ATCCAAATCCGCCTCACAGTAGAGCTGGTATATCCACACACTGGCTGGCAAAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR TCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCCGAAGACCTCCGCTaGCATGGAGTGGAGAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETPEDLR*HGVERP Trigger: GGGCCTCTCCACTCCATGTCAGCGGAGGTCTTCGGG...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR CCA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCAGACCTCCGCTGACATaGAGTGGAGAGGCCCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: NKSSSLYNHELPWPMRDPRPPLT*SGEARA Trigger: TGCCCGGGCCTCTCCACTCCATGTCAGCGGAGGTCT...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR TCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCAGTTGCTTGGCTTTaGTCGTGGTCCGGGGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETPVAWL*SWSGVP Trigger: GGGGACCCCGGACCACGATCAAAGCCAAGCAACTGG...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR GCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCGCATCCGACGAGGACTaGGGAAAAAGGCGTGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETASDED*GKRRGA Trigger: GGCGCCACGCCTTTTTCCGCAGTCCTCGTCGGATGC...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR CCA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCGGTCACTGCCTGTGGTaGCCGAGTGGAGGCTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: NKSSSLYNHELPWPMRDPGHCLW*PSGGCS Trigger: AGAACAGCCTCCACTCGGCCACCACAGGCAGTGACC...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR CCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCTCCGCTGACATGGAGTaGAGAGGCCCGGGCAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETSADME*RGPGKL Trigger: CAGCTTGCCCGGGCCTCTCCACTCCATGTCAGCGGA...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR GCA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCGTCTCCTGGGCCAGTTaGTCACGGATATGGCGTGTG | + |
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Preference number: 4 (lower is better) Translates to: NKSSSLYNHELPWPMRDPVSWAS*SRIWRV Trigger: CACACGCCATATCCGTGAGCAACTGGCCCAGGAGAC...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR CCA 90 bp | GGAGCCCCAGTTTTGCGCTTTGCCAGCCAGTGTGTGGATATACCAGCTCTACTGGGAAACGGTCCAGGATaGGCCTTTTGCAGCCCGCAC | + |
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Preference number: 4 (lower is better) Translates to: GAPVLRFASQCVDIPALLGNGPG*AFCSPH Trigger: GTGCGGGCTGCAAAAGGCCCATCCTGGACCGTTTCC...CAGTAGAGCTGGTATATCCACACACTGGCTGGCAAAGCGCAAAACTGGGGCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CCA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCCTGAGCCTGAGAGGATaGCGGTCCTTGCGGGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: NKSSSLYNHELPWPMRDPLSLRG*RSLREE Trigger: TTCTTCCCGCAAGGACCGCCATCCTCTCAGGCTCAG...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR CCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCATCGCTGCGCCTCACTaGAAGGGTGGTGACCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETIAAPH*KGGDQA Trigger: TGCCTGGTCACCACCCTTCCAGTGAGGCGCAGCGAT...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR CCA 90 bp | TCTGAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGTCCGCTGACATGGAGTaGAGAGGCCCGGGCAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: SEIKARLCTTTSSRGPCESADME*RGPGKL Trigger: CAGCTTGCCCGGGCCTCTCCACTCCATGTCAGCGGA...CTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR TCA 90 bp | GCATTGCCCAGGACTGATCGAGGCGAGGCTTCAGCTGTCCAAGACGTCTTCCCAACTTGTTCTCGTCTATaGTGTAGAGCTCCTCGCCGG | + |
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Preference number: 4 (lower is better) Translates to: ALPRTDRGEASAVQDVFPTCSRL*CRAPRR Trigger: CCGGCGAGGAGCTCTACATCATAGACGAGAACAAGT...TGGGAAGACGTCTTGGACAGCTGAAGCCTCGCCTCGATCAGTCCTGGGCAATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR TCA 90 bp | ACTAAGAAGGGATCTCCCAAAACTAGAACTAGAACCCTCTGGACTGGAGCGCCCCCAGTTGCTTGGCTTTaGTCGTGGTCCGGGGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: TKKGSPKTRTRTLWTGAPPVAWL*SWSGVP Trigger: GGGGACCCCGGACCACGATCAAAGCCAAGCAACTGG...GGGCGCTCCAGTCCAGAGGGTTCTAGTTCTAGTTTTGGGAGATCCCTTCTTAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR GCA 90 bp | GGAGCCCCAGTTTTGCGCTTTGCCAGCCAGTGTGTGGATATACCAGCTCTACTGGTCTCCTGGGCCAGTTaGTCACGGATATGGCGTGTG | + |
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Preference number: 4 (lower is better) Translates to: GAPVLRFASQCVDIPALLVSWAS*SRIWRV Trigger: CACACGCCATATCCGTGAGCAACTGGCCCAGGAGAC...CAGTAGAGCTGGTATATCCACACACTGGCTGGCAAAGCGCAAAACTGGGGCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CCA 90 bp | TCTGAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACTAGGCGAGTCCCCTaGGGGATGTGCCAGGATGTC | + |
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Preference number: 4 (lower is better) Translates to: SEIKARLCTTTSSRGPCETRRVP*GMCQDV Trigger: GACATCCTGGCACATCCCCCAGGGGACTCGCCTAGT...CTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| 3UTR CAA 72 bp | GGGATAGCTCGGAATTCCCCTTCCGGAGCCCCAGTTTaGCGCTTTGCCAGCCAGTGTGTGGATATACCAGCT | + |
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Preference number: 4 (lower is better) Translates to: GIARNSPSGAPV*RFASQCVDIPA Trigger: AGCTGGTATATCCACACACTGGCTGGCAAAGCGCAAAACTGGGGCTCCGGAAGGGGAATTCCGAGCTATCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR GCA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCGGAAGAAGTCGTAGTTaGCTCCGGGACCGTAGTACT | + |
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Preference number: 4 (lower is better) Translates to: NKSSSLYNHELPWPMRDPGRSRS*LRDRST Trigger: AGTACTACGGTCCCGGAGGCAACTACGACTTCTTCC...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR CCA 90 bp | CTGGAGACCATCCTGTGGAGAGAACGTGAGTGTGAGTGTGTGTGTGTGAGTGTACCTGTGGTGGCCGAGTaGAGGCTGTTCTCTTTGGCG | + |
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Preference number: 4 (lower is better) Translates to: LETILWRERECECVCVSVPVVAE*RLFSLA Trigger: CGCCAAAGAGAACAGCCTCCACTCGGCCACCACAGG...TACACTCACACACACACACTCACACTCACGTTCTCTCCACAGGATGGTCTCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CCA 90 bp | TCTGAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGCTGAGCCTGAGAGGATaGCGGTCCTTGCGGGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: SEIKARLCTTTSSRGPCELSLRG*RSLREE Trigger: TTCTTCCCGCAAGGACCGCCATCCTCTCAGGCTCAG...CTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR CCA 90 bp | TCTGAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGATGAGAAAGGTGGACTaGGCCCGAAGACCTCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: SEIKARLCTTTSSRGPCEMRKVD*ARRPPL Trigger: CAGCGGAGGTCTTCGGGCCCAGTCCACCTTTCTCAT...CTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR TCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCACTTGTTCTCGTCTATaGTGTAGAGCTCCTCGCCGG | + |
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Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETTCSRL*CRAPRR Trigger: CCGGCGAGGAGCTCTACATCATAGACGAGAACAAGT...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR TCA 90 bp | CTGTGGAGAGAACGTGAGTGTGAGTGTGTGTGTGTGAGTGTATGTATGTGTGTACCCGAAGACCTCCGCTaGCATGGAGTGGAGAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LWRERECECVCVSVCMCVPEDLR*HGVERP Trigger: GGGCCTCTCCACTCCATGTCAGCGGAGGTCTTCGGG...TACACACATACATACACTCACACACACACACTCACACTCACGTTCTCTCCACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CCA 90 bp | CGCTGGTGGAGTCTGTCCATGGATCCAGGTCATGAAGGTGGGGATAGCTCGGAAGGAGGCTGTTCTCTTTaGCGACACTGCTGTTACTCA | + |
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Preference number: 4 (lower is better) Translates to: RWWSLSMDPGHEGGDSSEGGCSL*RHCCYS Trigger: TGAGTAACAGCAGTGTCGCCAAAGAGAACAGCCTCC...TTCCGAGCTATCCCCACCTTCATGACCTGGATCCATGGACAGACTCCACCAGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCGGCATCATCCTGCGATaGATCTTGGGAATCCGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETGIILR*ILGIRR Trigger: TCTCCGGATTCCCAAGATCCATCGCAGGATGATGCC...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR TCA 90 bp | CTGTGGAGAGAACGTGAGTGTGAGTGTGTGTGTGTGAGTGTATGTATGTGTGTAAGCACTGGACGCACTTaGCGTGCCAGGCCCTGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LWRERECECVCVSVCMCVSTGRT*RARPCP Trigger: TGGACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCT...TACACACATACATACACTCACACACACACACTCACACTCACGTTCTCTCCACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR GCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCTCCTTGGCATCATCCTaGGATGGATCTTGGGAATCC | + |
|
Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETSLASS*DGSWES Trigger: GGATTCCCAAGATCCATCGCAGGATGATGCCAAGGA...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR GCA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCTTCAACGTCTCCAGTTaGTTGGCTTTGATCGTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: NKSSSLYNHELPWPMRDPFNVSS*LALIVV Trigger: GACCACGATCAAAGCCAAGCAACTGGAGACGTTGAA...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR CCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCGGAGGCTGTTCTCTTTaGCGACACTGCTGTTACTCA | + |
|
Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETGGCSL*RHCCYS Trigger: TGAGTAACAGCAGTGTCGCCAAAGAGAACAGCCTCC...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR CCA 90 bp | TCTGAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGGGCATCATCCTGCGATaGATCTTGGGAATCCGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: SEIKARLCTTTSSRGPCEGIILR*ILGIRR Trigger: TCTCCGGATTCCCAAGATCCATCGCAGGATGATGCC...CTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR CCA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCTTCTGGAACCAGACCTaGATAACACGCATGTTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: NKSSSLYNHELPWPMRDPFWNQT*ITRMLR Trigger: CCTCAACATGCGTGTTATCCAGGTCTGGTTCCAGAA...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR GCA 90 bp | GCACAGCAGGTCGGTGTTTCTGAAGCTATTAAGAGTTTGTTGTCATCGCTGAACTGGACGCACTTGACGTaGCAGGCCCTGTCCAACACG | + |
|
Preference number: 4 (lower is better) Translates to: AQQVGVSEAIKSLLSSLNWTHLT*QALSNT Trigger: CGTGTTGGACAGGGCCTGGCACGTCAAGTGCGTCCA...GTTCAGCGATGACAACAAACTCTTAATAGCTTCAGAAACACCGACCTGCTGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR CCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCACTTTCAGAGTCCTTaGCATCATCCTGCGATGGAT | + |
|
Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETHFQSP*HHPAMD Trigger: ATCCATCGCAGGATGATGCCAAGGACTCTGAAAGTG...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR CCA 90 bp | GCACAGCAGGTCGGTGTTTCTGAAGCTATTAAGAGTTTGTTGTCATCGCTGAACACTAGGCGAGTCCCCTaGGGGATGTGCCAGGATGTC | + |
|
Preference number: 4 (lower is better) Translates to: AQQVGVSEAIKSLLSSLNTRRVP*GMCQDV Trigger: GACATCCTGGCACATCCCCCAGGGGACTCGCCTAGT...GTTCAGCGATGACAACAAACTCTTAATAGCTTCAGAAACACCGACCTGCTGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR CCA 90 bp | GGAGCCCCAGTTTTGCGCTTTGCCAGCCAGTGTGTGGATATACCAGCTCTACTGTCCTGCGATGGATCTTaGGAATCCGGAGATAAACTA | + |
|
Preference number: 4 (lower is better) Translates to: GAPVLRFASQCVDIPALLSCDGS*ESGDKL Trigger: TAGTTTATCTCCGGATTCCCAAGATCCATCGCAGGA...CAGTAGAGCTGGTATATCCACACACTGGCTGGCAAAGCGCAAAACTGGGGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR CCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCTCCTGCGATGGATCTTaGGAATCCGGAGATAAACTA | + |
|
Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETSCDGS*ESGDKL Trigger: TAGTTTATCTCCGGATTCCCAAGATCCATCGCAGGA...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR CCA 90 bp | TCTGAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGCACTTTCAGAGTCCTTaGCATCATCCTGCGATGGAT | + |
|
Preference number: 4 (lower is better) Translates to: SEIKARLCTTTSSRGPCEHFQSP*HHPAMD Trigger: ATCCATCGCAGGATGATGCCAAGGACTCTGAAAGTG...CTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR CCA 90 bp | TTTCCTTTGCCTCGTGTAAACAACACCTTTTTACATACTAGCACAGTGAGCCGCATCGCTGCGCCTCACTaGAAGGGTGGTGACCAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: FPLPRVNNTFLHTSTVSRIAAPH*KGGDQA Trigger: TGCCTGGTCACCACCCTTCCAGTGAGGCGCAGCGAT...GCGGCTCACTGTGCTAGTATGTAAAAAGGTGTTGTTTACACGAGGCAAAGGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR TCA 90 bp | ACTAAGAAGGGATCTCCCAAAACTAGAACTAGAACCCTCTGGACTGGAGCGCCCACCACCTTCCTTATCTaGGACGTTGGCACTTTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: TKKGSPKTRTRTLWTGAPTTFLI*DVGTFR Trigger: TCTGAAAGTGCCAACGTCTCAGATAAGGAAGGTGGT...GGGCGCTCCAGTCCAGAGGGTTCTAGTTCTAGTTTTGGGAGATCCCTTCTTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| 3UTR CAA 72 bp | TACCAGCTCTACTGTGAGGCGGATTTGGATCCTATTTaGGACCCCCTTTGCTATCCAGTCTCCCCAAACAGA | + |
|
Preference number: 4 (lower is better) Translates to: YQLYCEADLDPI*DPLCYPVSPNR Trigger: TCTGTTTGGGGAGACTGGATAGCAAAGGGGGTCCAAAATAGGATCCAAATCCGCCTCACAGTAGAGCTGGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR TCA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCTTGGCACCTAGGTTCTaGTCATCATTCTCATTACTA | + |
|
Preference number: 4 (lower is better) Translates to: EIKARLCTTTSSRGPCETLAPRF*SSFSLL Trigger: TAGTAATGAGAATGATGATCAGAACCTAGGTGCCAA...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR GCA 90 bp | GGTGTTTCTGAAGCTATTAAGAGTTTGTTGTCATCGCTGAACTCTGAGACAACACCAGGATGGGCCTTTTaGAGCCCGCACAGTGCACCA | + |
|
Preference number: 4 (lower is better) Translates to: GVSEAIKSLLSSLNSETTPGWAF*SPHSAP Trigger: TGGTGCACTGTGCGGGCTGCAAAAGGCCCATCCTGG...TGTTGTCTCAGAGTTCAGCGATGACAACAAACTCTTAATAGCTTCAGAAACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR GCA 90 bp | TCTGAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACTTCTCGGTCAGGTTaGATTTACATTCACAGCACT | + |
|
Preference number: 4 (lower is better) Translates to: SEIKARLCTTTSSRGPCETSRSG*IYIHST Trigger: AGTGCTGTGAATGTAAATGCAACCTGACCGAGAAGT...CTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| 3UTR CAA 72 bp | AGTGTGTGGATATACCAGCTCTACTGTGAGGCGGATTaGGATCCTATTTTGGACCCCCTTTGCTATCCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: SVWIYQLYCEAD*DPILDPLCYPV Trigger: GACTGGATAGCAAAGGGGGTCCAAAATAGGATCCAAATCCGCCTCACAGTAGAGCTGGTATATCCACACACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR TCA 90 bp | ATTTATTCTATTTGGCAACTGTCTGAATATCATGGTTTTTCCTTTGCCTCGTGTTCACTGGAAGGGTGGTaGCCAGGCAGCGGGTGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: IYSIWQLSEYHGFSFASCSLEGW*PGSGWS Trigger: GGACCACCCGCTGCCTGGTCACCACCCTTCCAGTGA...ACACGAGGCAAAGGAAAAACCATGATATTCAGACAGTTGCCAAATAGAATAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR CCA 90 bp | GCACAGCAGGTCGGTGTTTCTGAAGCTATTAAGAGTTTGTTGTCATCGCTGAACTTACATTCACAGCACTaGACGCACTTGACGTGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: AQQVGVSEAIKSLLSSLNLHSQH*THLTCQ Trigger: CTGGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAA...GTTCAGCGATGACAACAAACTCTTAATAGCTTCAGAAACACCGACCTGCTGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR CCA 90 bp | ACCATCCTGTGGAGAGAACGTGAGTGTGAGTGTGTGTGTGTGAGTGTATGTATGTTCTGGAACCAGACCTaGATAACACGCATGTTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: TILWRERECECVCVSVCMFWNQT*ITRMLR Trigger: CCTCAACATGCGTGTTATCCAGGTCTGGTTCCAGAA...CATACATACACTCACACACACACACTCACACTCACGTTCTCTCCACAGGATGGT 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR TCA 90 bp | TCTGAGACAACACTAAGAAGGGATCTCCCAAAACTAGAACTAGAACCCTCTGGAGTGAAGCAGTTGAGGTaGAACACTTTGCTTCGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: SETTLRRDLPKLELEPSGVKQLR*NTLLRA Trigger: AGCGCGAAGCAAAGTGTTTCACCTCAACTGCTTCAC...TCCAGAGGGTTCTAGTTCTAGTTTTGGGAGATCCCTTCTTAGTGTTGTCTCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR CCA 90 bp | ATTTATTCTATTTGGCAACTGTCTGAATATCATGGTTTTTCCTTTGCCTCGTGTAGACCTCCGCTGACATaGAGTGGAGAGGCCCGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: IYSIWQLSEYHGFSFASCRPPLT*SGEARA Trigger: TGCCCGGGCCTCTCCACTCCATGTCAGCGGAGGTCT...ACACGAGGCAAAGGAAAAACCATGATATTCAGACAGTTGCCAAATAGAATAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR CCA 90 bp | ATTTATTCTATTTGGCAACTGTCTGAATATCATGGTTTTTCCTTTGCCTCGTGTATGAGAAAGGTGGACTaGGCCCGAAGACCTCCGCTG | + |
|
Preference number: 4 (lower is better) Translates to: IYSIWQLSEYHGFSFASCMRKVD*ARRPPL Trigger: CAGCGGAGGTCTTCGGGCCCAGTCCACCTTTCTCAT...ACACGAGGCAAAGGAAAAACCATGATATTCAGACAGTTGCCAAATAGAATAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| 3UTR CAA 72 bp | CAGCAGGTCGGTGTTTCTGAAGCTATTAAGAGTTTGTaGTCATCGCTGAACTCTGAGACAACACTAAGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: QQVGVSEAIKSL*SSLNSETTLRR Trigger: CCTTCTTAGTGTTGTCTCAGAGTTCAGCGATGACAACAAACTCTTAATAGCTTCAGAAACACCGACCTGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR GCA 90 bp | ATTTATTCTATTTGGCAACTGTCTGAATATCATGGTTTTTCCTTTGCCTCGTGTGGAAGAAGTCGTAGTTaGCTCCGGGACCGTAGTACT | + |
|
Preference number: 4 (lower is better) Translates to: IYSIWQLSEYHGFSFASCGRSRS*LRDRST Trigger: AGTACTACGGTCCCGGAGGCAACTACGACTTCTTCC...ACACGAGGCAAAGGAAAAACCATGATATTCAGACAGTTGCCAAATAGAATAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR GCA 90 bp | ATTTATTCTATTTGGCAACTGTCTGAATATCATGGTTTTTCCTTTGCCTCGTGTTCCTTGGCATCATCCTaGGATGGATCTTGGGAATCC | + |
|
Preference number: 4 (lower is better) Translates to: IYSIWQLSEYHGFSFASCSLASS*DGSWES Trigger: GGATTCCCAAGATCCATCGCAGGATGATGCCAAGGA...ACACGAGGCAAAGGAAAAACCATGATATTCAGACAGTTGCCAAATAGAATAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR GCA 90 bp | TGTCTGAATATCATGGTTTTTCCTTTGCCTCGTGTAAACAACACCTTTTTACATTTCAACGTCTCCAGTTaGTTGGCTTTGATCGTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: CLNIMVFPLPRVNNTFLHFNVSS*LALIVV Trigger: GACCACGATCAAAGCCAAGCAACTGGAGACGTTGAA...ATGTAAAAAGGTGTTGTTTACACGAGGCAAAGGAAAAACCATGATATTCAGACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| 3UTR CAA 72 bp | GAGAGAGAGGGAGAGAGAGATGTTAAGGTAGAAGAGTaGATACTGAGGGCTTTACATTTAGAATTTTGCAAT | + |
|
Preference number: 4 (lower is better) Translates to: EREGERDVKVEE*ILRALHLEFCN Trigger: ATTGCAAAATTCTAAATGTAAAGCCCTCAGTATCAACTCTTCTACCTTAACATCTCTCTCTCCCTCTCTCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR TCA 90 bp | ATCATGGTTTTTCCTTTGCCTCGTGTAAACAACACCTTTTTACATACTAGCACATTGGCACCTAGGTTCTaGTCATCATTCTCATTACTA | + |
|
Preference number: 4 (lower is better) Translates to: IMVFPLPRVNNTFLHTSTLAPRF*SSFSLL Trigger: TAGTAATGAGAATGATGATCAGAACCTAGGTGCCAA...TGTGCTAGTATGTAAAAAGGTGTTGTTTACACGAGGCAAAGGAAAAACCATGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| 3UTR CAA 72 bp | CTATTTGGCAACTGTCTGAATATCATGGTTTTTCCTTaGCCTCGTGTAAACAACACCTTTTTACATACTAGC | + |
|
Preference number: 4 (lower is better) Translates to: LFGNCLNIMVFP*PRVNNTFLHTS Trigger: GCTAGTATGTAAAAAGGTGTTGTTTACACGAGGCAAAGGAAAAACCATGATATTCAGACAGTTGCCAAATAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS GCA 90 bp | CGCCCGGCTCCAGGCGGTCCACCAGCGGCCGCATCCGACGAGGACTaGGGAAAAAGGCGTGGCGCCGCGCGCCTAGCGCGCTTAGCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: RPAPGGPPAAASDED*GKRRGAARLARLAV Trigger: AACAGCTAAGCGCGCTAGGCGCGCGGCGCCACGCCTTTTTCCGCAGTCCTCGTCGGATGCGGCCGCTGGTGGACCGCCTGGAGCCGGGCG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS GCA 90 bp | CCCGGGCAAGCTGGGCTCAGGACTAGGCGAGTCCCCTGGGGGATGTaGCAGGATGTCAGTAAATCGCTGCGCCTCACTGGAAGGGTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: PGQAGLRTRRVPWGM*QDVSKSLRLTGRVV Trigger: CACCACCCTTCCAGTGAGGCGCAGCGATTTACTGACATCCTGGCACATCCCCCAGGGGACTCGCCTAGTCCTGAGCCCAGCTTGCCCGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS CCA 90 bp | GTGGAGAGGCCCGGGCAAGCTGGGCTCAGGACTAGGCGAGTCCCCTaGGGGATGTGCCAGGATGTCAGTAAATCGCTGCGCCTCACTGGA | + |
|
Preference number: 5 (lower is better) Translates to: VERPGQAGLRTRRVP*GMCQDVSKSLRLTG Trigger: TCCAGTGAGGCGCAGCGATTTACTGACATCCTGGCACATCCCCCAGGGGACTCGCCTAGTCCTGAGCCCAGCTTGCCCGGGCCTCTCCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS CCA 90 bp | GATGAGAAAGGTGGACTGGGCCCGAAGACCTCCGCTGACATGGAGTaGAGAGGCCCGGGCAAGCTGGGCTCAGGACTAGGCGAGTCCCCT | + |
|
Preference number: 5 (lower is better) Translates to: DEKGGLGPKTSADME*RGPGKLGSGLGESP Trigger: AGGGGACTCGCCTAGTCCTGAGCCCAGCTTGCCCGGGCCTCTCCACTCCATGTCAGCGGAGGTCTTCGGGCCCAGTCCACCTTTCTCATC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR CAA 90 bp | GGAGCCCCAGTTTTGCGCTTTGCCAGCCAGTGTGTGGATATACCAGCTCTACTGTCCAGGATGGGCCTTTaGCAGCCCGCACAGTGCACC | + |
|
Preference number: 5 (lower is better) Translates to: GAPVLRFASQCVDIPALLSRMGL*QPAQCT Trigger: GGTGCACTGTGCGGGCTGCAAAAGGCCCATCCTGGA...CAGTAGAGCTGGTATATCCACACACTGGCTGGCAAAGCGCAAAACTGGGGCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR CAA 90 bp | CGCTGGTGGAGTCTGTCCATGGATCCAGGTCATGAAGGTGGGGATAGCTCGGAATCCAGTTGCTTGGCTTaGATCGTGGTCCGGGGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: RWWSLSMDPGHEGGDSSESSCLA*IVVRGP Trigger: GGGACCCCGGACCACGATCAAAGCCAAGCAACTGGA...TTCCGAGCTATCCCCACCTTCATGACCTGGATCCATGGACAGACTCCACCAGCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR CAA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCTCCAGTTGCTTGGCTTaGATCGTGGTCCGGGGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: NKSSSLYNHELPWPMRDPSSCLA*IVVRGP Trigger: GGGACCCCGGACCACGATCAAAGCCAAGCAACTGGA...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR CAA 90 bp | TCTGAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGAAGGAGAAGGGGCCGTaGGGGATGAGTTCGCCCGGC | + |
|
Preference number: 5 (lower is better) Translates to: SEIKARLCTTTSSRGPCEKEKGP*GMSSPG Trigger: GCCGGGCGAACTCATCCCCAACGGCCCCTTCTCCTT...CTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR CAA 90 bp | GCTTTGCCAGCCAGTGTGTGGATATACCAGCTCTACTGTGAGGCGGATTTGGATCAGCACTGGACGCACTaGACGTGCCAGGCCCTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: ALPASVWIYQLYCEADLDQHWTH*TCQALS Trigger: GGACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTG...ATCCAAATCCGCCTCACAGTAGAGCTGGTATATCCACACACTGGCTGGCAAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR CAA 90 bp | GGAGCCCCAGTTTTGCGCTTTGCCAGCCAGTGTGTGGATATACCAGCTCTACTGTGCGAACCAGATCGCTaGGAGAGATGCCCTGCGCAC | + |
|
Preference number: 5 (lower is better) Translates to: GAPVLRFASQCVDIPALLCEPDR*ERCPAH Trigger: GTGCGCAGGGCATCTCTCCAAGCGATCTGGTTCGCA...CAGTAGAGCTGGTATATCCACACACTGGCTGGCAAAGCGCAAAACTGGGGCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS TCA 90 bp | TTTCAGGAGGGTGAGACAAATGGTTCCCGTAGCTGGCTCCACCATTaGCCGACAGAGATGAGAAAGGTGGACTGGGCCCGAAGACCTCCG | + |
|
Preference number: 5 (lower is better) Translates to: FQEGETNGSRSWLHH*PTEMRKVDWARRPP Trigger: CGGAGGTCTTCGGGCCCAGTCCACCTTTCTCATCTCTGTCGGTCAATGGTGGAGCCAGCTACGGGAACCATTTGTCTCACCCTCCTGAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
||
| CDS-3UTR CAA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCCCGGTGGAGAGCTGCTaGTTACACATCATGCAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: NKSSSLYNHELPWPMRDPPVESC*LHIMQV Trigger: CACCTGCATGATGTGTAACAAGCAGCTCTCCACCGG...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
||
| CDS-3UTR CAA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCATATGGCGTGTGGGCTaGGGTGTAGCTGCAAAGGCT | + |
|
Preference number: 5 (lower is better) Translates to: NKSSSLYNHELPWPMRDPIWRVG*GVAAKA Trigger: AGCCTTTGCAGCTACACCCAAGCCCACACGCCATAT...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR CAA 90 bp | AATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCCTGGAGGCTGTTCTCTTaGGCGACACTGCTGTTACTC | + |
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Preference number: 5 (lower is better) Translates to: NKSSSLYNHELPWPMRDPWRLFS*ATLLLL Trigger: GAGTAACAGCAGTGTCGCCAAAGAGAACAGCCTCCA...GGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS GCA 90 bp | TCGGTCAGGTTGCATTTACATTCACAGCACTGGACGCACTTGACGTaGCAGGCCCTGTCCAACACGTTCAAGAGGAAACGGTCCAGGATG | + |
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Preference number: 5 (lower is better) Translates to: SVRLHLHSQHWTHLT*QALSNTFKRKRSRM Trigger: CATCCTGGACCGTTTCCTCTTGAACGTGTTGGACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGACCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS CCA 90 bp | ACGTTGGCACTTTCAGAGTCCTTGGCATCATCCTGCGATGGATCTTaGGAATCCGGAGATAAACTAGGGTCACTGCCTGTGGTGGCCGAG | + |
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Preference number: 5 (lower is better) Translates to: TLALSESLASSCDGS*ESGDKLGSLPVVAE Trigger: CTCGGCCACCACAGGCAGTGACCCTAGTTTATCTCCGGATTCCCAAGATCCATCGCAGGATGATGCCAAGGACTCTGAAAGTGCCAACGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR CAA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCGCACTTTCAGAGTCCTaGGCATCATCCTGCGATGGA | + |
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Preference number: 5 (lower is better) Translates to: EIKARLCTTTSSRGPCETALSES*ASSCDG Trigger: TCCATCGCAGGATGATGCCAAGGACTCTGAAAGTGC...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS TCA 90 bp | ACTTCTCGGTCAGGTTGCATTTACATTCACAGCACTGGACGCACTTaGCGTGCCAGGCCCTGTCCAACACGTTCAAGAGGAAACGGTCCA | + |
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Preference number: 5 (lower is better) Translates to: TSRSGCIYIHSTGRT*RARPCPTRSRGNGP Trigger: TGGACCGTTTCCTCTTGAACGTGTTGGACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGACCGAGAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CAA 90 bp | GAAATAAAAGCTCGTCTCTGTACAACCACGAGCTCCCGTGGCCCATGCGAGACCCTTCAACGTCTCCAGTaGCTTGGCTTTGATCGTGGT | + |
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Preference number: 5 (lower is better) Translates to: EIKARLCTTTSSRGPCETLQRLQ*LGFDRG Trigger: ACCACGATCAAAGCCAAGCAACTGGAGACGTTGAAG...GGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS-3UTR CAA 90 bp | ACTAAGAAGGGATCTCCCAAAACTAGAACTAGAACCCTCTGGACTGGAGCGCCCGCACTTTCAGAGTCCTaGGCATCATCCTGCGATGGA | + |
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Preference number: 5 (lower is better) Translates to: TKKGSPKTRTRTLWTGAPALSES*ASSCDG Trigger: TCCATCGCAGGATGATGCCAAGGACTCTGAAAGTGC...GGGCGCTCCAGTCCAGAGGGTTCTAGTTCTAGTTTTGGGAGATCCCTTCTTAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CAA 90 bp | AGCTCTACTGTGAGGCGGATTTGGATCCTATTTTGGACCCCCTTTGCTATCCAGATATGGCGTGTGGGCTaGGGTGTAGCTGCAAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: SSTVRRIWILFWTPFAIQIWRVG*GVAAKA Trigger: AGCCTTTGCAGCTACACCCAAGCCCACACGCCATAT...CTGGATAGCAAAGGGGGTCCAAAATAGGATCCAAATCCGCCTCACAGTAGAGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CAA 90 bp | ACCATCCTGTGGAGAGAACGTGAGTGTGAGTGTGTGTGTGTGAGTGTATGTATGCACTTCTCGGTCAGGTaGCATTTACATTCACAGCAC | + |
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Preference number: 5 (lower is better) Translates to: TILWRERECECVCVSVCMHFSVR*HLHSQH Trigger: GTGCTGTGAATGTAAATGCAACCTGACCGAGAAGTG...CATACATACACTCACACACACACACTCACACTCACGTTCTCTCCACAGGATGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CAA 90 bp | ATTTATTCTATTTGGCAACTGTCTGAATATCATGGTTTTTCCTTTGCCTCGTGTAAGGAGAAGGGGCCGTaGGGGATGAGTTCGCCCGGC | + |
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Preference number: 5 (lower is better) Translates to: IYSIWQLSEYHGFSFASCKEKGP*GMSSPG Trigger: GCCGGGCGAACTCATCCCCAACGGCCCCTTCTCCTT...ACACGAGGCAAAGGAAAAACCATGATATTCAGACAGTTGCCAAATAGAATAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CAA 90 bp | TGTCTGAATATCATGGTTTTTCCTTTGCCTCGTGTAAACAACACCTTTTTACATGCACAACCGGCGCATTaGGTACCGAAACATCGGAAG | + |
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Preference number: 5 (lower is better) Translates to: CLNIMVFPLPRVNNTFLHAQPAH*VPKHRK Trigger: CTTCCGATGTTTCGGTACCAAATGCGCCGGTTGTGC...ATGTAAAAAGGTGTTGTTTACACGAGGCAAAGGAAAAACCATGATATTCAGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CAA 90 bp | ATTTATTCTATTTGGCAACTGTCTGAATATCATGGTTTTTCCTTTGCCTCGTGTTGGAGGCTGTTCTCTTaGGCGACACTGCTGTTACTC | + |
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Preference number: 5 (lower is better) Translates to: IYSIWQLSEYHGFSFASCWRLFS*ATLLLL Trigger: GAGTAACAGCAGTGTCGCCAAAGAGAACAGCCTCCA...ACACGAGGCAAAGGAAAAACCATGATATTCAGACAGTTGCCAAATAGAATAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS-3UTR CAA 90 bp | ATCATGGTTTTTCCTTTGCCTCGTGTAAACAACACCTTTTTACATACTAGCACACTTCAACGTCTCCAGTaGCTTGGCTTTGATCGTGGT | + |
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Preference number: 5 (lower is better) Translates to: IMVFPLPRVNNTFLHTSTLQRLQ*LGFDRG Trigger: ACCACGATCAAAGCCAAGCAACTGGAGACGTTGAAG...TGTGCTAGTATGTAAAAAGGTGTTGTTTACACGAGGCAAAGGAAAAACCATGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS GCA 72 bp | CCAGGCGGTCCACCAGCGGCCGCATCCGACGAGGACTaGGGAAAAAGGCGTGGCGCCGCGCGCCTAGCGCGC | + |
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Preference number: 6 (lower is better) Translates to: PGGPPAAASDED*GKRRGAARLAR Trigger: GCGCGCTAGGCGCGCGGCGCCACGCCTTTTTCCGCAGTCCTCGTCGGATGCGGCCGCTGGTGGACCGCCTGG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS CCA 72 bp | GGTGGACTGGGCCCGAAGACCTCCGCTGACATGGAGTaGAGAGGCCCGGGCAAGCTGGGCTCAGGACTAGGC | + |
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Preference number: 6 (lower is better) Translates to: GGLGPKTSADME*RGPGKLGSGLG Trigger: GCCTAGTCCTGAGCCCAGCTTGCCCGGGCCTCTCCACTCCATGTCAGCGGAGGTCTTCGGGCCCAGTCCACC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS CCA 72 bp | CCCGGGCAAGCTGGGCTCAGGACTAGGCGAGTCCCCTaGGGGATGTGCCAGGATGTCAGTAAATCGCTGCGC | + |
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Preference number: 6 (lower is better) Translates to: PGQAGLRTRRVP*GMCQDVSKSLR Trigger: GCGCAGCGATTTACTGACATCCTGGCACATCCCCCAGGGGACTCGCCTAGTCCTGAGCCCAGCTTGCCCGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS CCA 72 bp | AGAAAGGTGGACTGGGCCCGAAGACCTCCGCTGACATaGAGTGGAGAGGCCCGGGCAAGCTGGGCTCAGGAC | + |
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Preference number: 6 (lower is better) Translates to: RKVDWARRPPLT*SGEARASWAQD Trigger: GTCCTGAGCCCAGCTTGCCCGGGCCTCTCCACTCCATGTCAGCGGAGGTCTTCGGGCCCAGTCCACCTTTCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS GCA 72 bp | GCTGGGCTCAGGACTAGGCGAGTCCCCTGGGGGATGTaGCAGGATGTCAGTAAATCGCTGCGCCTCACTGGA | + |
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Preference number: 6 (lower is better) Translates to: AGLRTRRVPWGM*QDVSKSLRLTG Trigger: TCCAGTGAGGCGCAGCGATTTACTGACATCCTGGCACATCCCCCAGGGGACTCGCCTAGTCCTGAGCCCAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS CAA 72 bp | GCAAAGGCTGCCTTCAACGTCTCCAGTTGCTTGGCTTaGATCGTGGTCCGGGGTCCCCTACGTTTGGCACCT | + |
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Preference number: 6 (lower is better) Translates to: AKAAFNVSSCLA*IVVRGPLRLAP Trigger: AGGTGCCAAACGTAGGGGACCCCGGACCACGATCAAAGCCAAGCAACTGGAGACGTTGAAGGCAGCCTTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS CAA 72 bp | TCGCTTGGAGAGATGCCCTGCGCACAACCGGCGCATTaGGTACCGAAACATCCCGCTATCTTCCGCTTGCTT | + |
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Preference number: 6 (lower is better) Translates to: SLGEMPCAQPAH*VPKHPAIFRLL Trigger: AAGCAAGCGGAAGATAGCGGGATGTTTCGGTACCAAATGCGCCGGTTGTGCGCAGGGCATCTCTCCAAGCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092827.3 |
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| CDS CAA 90 bp | CGAACCAGATCGCTTGGAGAGATGCCCTGCGCACAACCGGCGCATTaGGTACCGAAACATCCCGCTATCTTCCGCTTGCTTTGCCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: RTRSLGEMPCAQPAH*VPKHPAIFRLLCLS Trigger: AGAAAGGCAAAGCAAGCGGAAGATAGCGGGATGTTTCGGTACCAAATGCGCCGGTTGTGCGCAGGGCATCTCTCCAAGCGATCTGGTTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092827.3 |
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| CDS CAA 90 bp | CACTTCTCGGTCAGGTTGCATTTACATTCACAGCACTGGACGCACTaGACGTGCCAGGCCCTGTCCAACACGTTCAAGAGGAAACGGTCC | + |
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Preference number: 6 (lower is better) Translates to: HFSVRLHLHSQHWTH*TCQALSNTFKRKRS Trigger: GGACCGTTTCCTCTTGAACGTGTTGGACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGACCGAGAAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS CAA 72 bp | GTCAGGTTGCATTTACATTCACAGCACTGGACGCACTaGACGTGCCAGGCCCTGTCCAACACGTTCAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: VRLHLHSQHWTH*TCQALSNTFKR Trigger: CCTCTTGAACGTGTTGGACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS TCA 72 bp | TCAGGTTGCATTTACATTCACAGCACTGGACGCACTTaGCGTGCCAGGCCCTGTCCAACACGTTCAAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: SGCIYIHSTGRT*RARPCPTRSRG Trigger: TCCTCTTGAACGTGTTGGACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS GCA 72 bp | TTGCATTTACATTCACAGCACTGGACGCACTTGACGTaGCAGGCCCTGTCCAACACGTTCAAGAGGAAACGG | + |
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Preference number: 6 (lower is better) Translates to: LHLHSQHWTHLT*QALSNTFKRKR Trigger: CCGTTTCCTCTTGAACGTGTTGGACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS CAA 72 bp | TCGCTTGGAGAGATGCCCTGCGCACAACCGGCGCATTaGGTACCGAAACATCGGAAGAAGTCGTTTTTACAG | + |
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Preference number: 6 (lower is better) Translates to: SLGEMPCAQPAH*VPKHRKKSFLQ Trigger: CTGTAAAAACGACTTCTTCCGATGTTTCGGTACCAAATGCGCCGGTTGTGCGCAGGGCATCTCTCCAAGCGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018842.14 |
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| CDS CCA 72 bp | CTTTCAGAGTCCTTGGCATCATCCTGCGATGGATCTTaGGAATCCGGAGATAAACTAGGGTCACTGCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: LSESLASSCDGS*ESGDKLGSLPV Trigger: CACAGGCAGTGACCCTAGTTTATCTCCGGATTCCCAAGATCCATCGCAGGATGATGCCAAGGACTCTGAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS CCA 72 bp | CTTCCTTATCTGAGACGTTGGCACTTTCAGAGTCCTTaGCATCATCCTGCGATGGATCTTGGGAATCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: LPYLRRWHFQSP*HHPAMDLGNPE Trigger: CTCCGGATTCCCAAGATCCATCGCAGGATGATGCCAAGGACTCTGAAAGTGCCAACGTCTCAGATAAGGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS CAA 72 bp | CCTTCCTTATCTGAGACGTTGGCACTTTCAGAGTCCTaGGCATCATCCTGCGATGGATCTTGGGAATCCGGA | + |
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Preference number: 6 (lower is better) Translates to: PSLSETLALSES*ASSCDGSWESG Trigger: TCCGGATTCCCAAGATCCATCGCAGGATGATGCCAAGGACTCTGAAAGTGCCAACGTCTCAGATAAGGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS GCA 72 bp | TGGTGGCCGAGTGGAGGCTGTTCTCTTTGGCGACACTaGTGTTACTCAGGTAATCCTCTTTACAAACGAACT | + |
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Preference number: 6 (lower is better) Translates to: WWPSGGCSLWRH*CYSGNPLYKRT Trigger: AGTTCGTTTGTAAAGAGGATTACCTGAGTAACAGCAGTGTCGCCAAAGAGAACAGCCTCCACTCGGCCACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018842.14 ENSMUST00000092827.3 ENSMUST00000184646.3 |
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| CDS CAA 90 bp | TTACTACCACCTTCCTTATCTGAGACGTTGGCACTTTCAGAGTCCTaGGCATCATCCTGCGATGGATCTTGGGAATCCGGAGATAAACTA | + |
|
Preference number: 6 (lower is better) Translates to: LLPPSLSETLALSES*ASSCDGSWESGDKL Trigger: TAGTTTATCTCCGGATTCCCAAGATCCATCGCAGGATGATGCCAAGGACTCTGAAAGTGCCAACGTCTCAGATAAGGAAGGTGGTAGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS CCA 72 bp | CATTCTCATTACTACCACCTTCCTTATCTGAGACGTTaGCACTTTCAGAGTCCTTGGCATCATCCTGCGATG | + |
|
Preference number: 6 (lower is better) Translates to: HSHYYHLPYLRR*HFQSPWHHPAM Trigger: CATCGCAGGATGATGCCAAGGACTCTGAAAGTGCCAACGTCTCAGATAAGGAAGGTGGTAGTAATGAGAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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| CDS CAA 72 bp | TCATTCTCATTACTACCACCTTCCTTATCTGAGACGTaGGCACTTTCAGAGTCCTTGGCATCATCCTGCGAT | + |
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Preference number: 6 (lower is better) Translates to: SFSLLPPSLSET*ALSESLASSCD Trigger: ATCGCAGGATGATGCCAAGGACTCTGAAAGTGCCAACGTCTCAGATAAGGAAGGTGGTAGTAATGAGAATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018842.14 ENSMUST00000184646.3 |
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