RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LHFPL4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042873

Ensembl transcript IDs: ENSMUST00000162280.2, ENSMUST00000203665.2

Found 190 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGATCAGGACCGGCAGGCAAGGACGCAGCAGGCAGCCCTGCACACTaGAGGGGTCCAAGGAGATTGCGCGGCAGAGCGTCCTTTCCCTGG +
Preference number: 1 (lower is better)
Translates to: RSGPAGKDAAGSPAH*RGPRRLRGRASFPW
Trigger: CCAGGGAAAGGACGCTCTGCCGCGCAATCTCCTTGGACCCCTTCAGTGTGCAGGGCTGCCTGCTGCGTCCTTGCCTGCCGGTCCTGATCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR TCA 90 bp GATACCCTGGGGCTCCTGCAGACTGCAGACCTCAGCCTGCCAGCCTaGAACTCCACACTGCACCGCTGGGCAGCAGCTGGTTGGCTGGAG +
Preference number: 1 (lower is better)
Translates to: DTLGLLQTADLSLPA*NSTLHRWAAAGWLE
Trigger: CTCCAGCCAACCAGCTGCTGCCCAGCGGTGCAGTGTGGAGTTTCAGGCTGGCAGGCTGAGGTCTGCAGTCTGCAGGAGCCCCAGGGTATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp TTCCCCGCGATACCCTGGGGCTCCTGCAGACTGCAGACCTCAGCCTaGCAGCCTGAAACTCCACACTGCACCGCTGGGCAGCAGCTGGTT +
Preference number: 1 (lower is better)
Translates to: FPAIPWGSCRLQTSA*QPETPHCTAGQQLV
Trigger: AACCAGCTGCTGCCCAGCGGTGCAGTGTGGAGTTTCAGGCTGGCAGGCTGAGGTCTGCAGTCTGCAGGAGCCCCAGGGTATCGCGGGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp GGATCTCAAGGGCTCTGCCTTCTTGCCAGGCTGCCACCTAGCCCCTaGCTCTCTTCAGAGCCCGGAGGAGGTCCGTGTGCAGCCAGTTCA +
Preference number: 1 (lower is better)
Translates to: GSQGLCLLARLPPSP*LSSEPGGGPCAASS
Trigger: TGAACTGGCTGCACACGGACCTCCTCCGGGCTCTGAAGAGAGGCAGGGGCTAGGTGGCAGCCTGGCAAGAAGGCAGAGCCCTTGAGATCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp GCTCCCTCTCTTCTTTCCCCGCGATACCCTGGGGCTCCTGCAGACTaGAGACCTCAGCCTGCCAGCCTGAAACTCCACACTGCACCGCTG +
Preference number: 1 (lower is better)
Translates to: APSLLSPRYPGAPAD*RPQPASLKLHTAPL
Trigger: CAGCGGTGCAGTGTGGAGTTTCAGGCTGGCAGGCTGAGGTCTGCAGTCTGCAGGAGCCCCAGGGTATCGCGGGGAAAGAAGAGAGGGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp CTAGGTCCAATGGAGGCGGGGCCAGACTCAGGATCTCAAGGGCTCTaGCTTCTTGCCAGGCTGCCACCTAGCCCCTGCCTCTCTTCAGAG +
Preference number: 1 (lower is better)
Translates to: LGPMEAGPDSGSQGL*LLARLPPSPCLSSE
Trigger: CTCTGAAGAGAGGCAGGGGCTAGGTGGCAGCCTGGCAAGAAGGCAGAGCCCTTGAGATCCTGAGTCTGGCCCCGCCTCCATTGGACCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp TGTCGCCTGTCTCCTGCCTCATCTTTACTTCGCCGGCTTTGCTCCTaGCCGCTTCTCAGTCAGTCACCCACTCCTGCCCCTCTCGCCACT +
Preference number: 1 (lower is better)
Translates to: CRLSPASSLLRRLCS*PLLSQSPTPAPLAT
Trigger: AGTGGCGAGAGGGGCAGGAGTGGGTGACTGACTGAGAAGCGGGCAGGAGCAAAGCCGGCGAAGTAAAGATGAGGCAGGAGACAGGCGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp CATGCCTGTCGCCTGTCTCCTGCCTCATCTTTACTTCGCCGGCTTTaGTCCTGCCCGCTTCTCAGTCAGTCACCCACTCCTGCCCCTCTC +
Preference number: 1 (lower is better)
Translates to: HACRLSPASSLLRRL*SCPLLSQSPTPAPL
Trigger: GAGAGGGGCAGGAGTGGGTGACTGACTGAGAAGCGGGCAGGAGCAAAGCCGGCGAAGTAAAGATGAGGCAGGAGACAGGCGACAGGCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp TCCTGCAGACTGCAGACCTCAGCCTGCCAGCCTGAAACTCCACACTaGACCGCTGGGCAGCAGCTGGTTGGCTGGAGAGTGGCAAGAACA +
Preference number: 1 (lower is better)
Translates to: SCRLQTSACQPETPH*TAGQQLVGWRVART
Trigger: TGTTCTTGCCACTCTCCAGCCAACCAGCTGCTGCCCAGCGGTGCAGTGTGGAGTTTCAGGCTGGCAGGCTGAGGTCTGCAGTCTGCAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 90 bp GTCACCCACTCCTGCCCCTCTCGCCACTACCTGGACCCTCCCCTCTaGTTTGAAGCTGAGGATCTGACTTCCTGCTCCCTTCTCCTTCTG +
Preference number: 1 (lower is better)
Translates to: VTHSCPSRHYLDPPL*FEAEDLTSCSLLLL
Trigger: CAGAAGGAGAAGGGAGCAGGAAGTCAGATCCTCAGCTTCAAACCAGAGGGGAGGGTCCAGGTAGTGGCGAGAGGGGCAGGAGTGGGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp CCCTCTCCACAGCCACCAACCCTGACAATGGGCCTGAGAAGTCTATaGTGTACAAAACAGGCCAGGCTCGAGGGGCCAGTCACCAGTGAG +
Preference number: 1 (lower is better)
Translates to: PSPQPPTLTMGLRSL*CTKQARLEGPVTSE
Trigger: CTCACTGGTGACTGGCCCCTCGAGCCTGGCCTGTTTTGTACAGCATAGACTTCTCAGGCCCATTGTCAGGGTTGGTGGCTGTGGAGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 90 bp CAGCCTGAAACTCCACACTGCACCGCTGGGCAGCAGCTGGTTGGCTaGAGAGTGGCAAGAACACTGGTAGACGACTCCTCAGAGGGAACT +
Preference number: 1 (lower is better)
Translates to: QPETPHCTAGQQLVG*RVARTLVDDSSEGT
Trigger: AGTTCCCTCTGAGGAGTCGTCTACCAGTGTTCTTGCCACTCTCCAGCCAACCAGCTGCTGCCCAGCGGTGCAGTGTGGAGTTTCAGGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 90 bp CACACAGCACAGGTCCTTGGAGGACTGCCAGTCAGAGTCCTGGGATaGCTGGTGGCTCCTGCTCTCTTCTCAGGAATACCTCCTGTCCCA +
Preference number: 1 (lower is better)
Translates to: HTAQVLGGLPVRVLG*LVAPALFSGIPPVP
Trigger: TGGGACAGGAGGTATTCCTGAGAAGAGAGCAGGAGCCACCAGCCATCCCAGGACTCTGACTGGCAGTCCTCCAAGGACCTGTGCTGTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp CCTTGGAGGACTGCCAGTCAGAGTCCTGGGATGGCTGGTGGCTCCTaGTCTCTTCTCAGGAATACCTCCTGTCCCACCCAAAAGCTAGCT +
Preference number: 1 (lower is better)
Translates to: PWRTASQSPGMAGGS*SLLRNTSCPTQKLA
Trigger: AGCTAGCTTTTGGGTGGGACAGGAGGTATTCCTGAGAAGAGAGCAGGAGCCACCAGCCATCCCAGGACTCTGACTGGCAGTCCTCCAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 90 bp CACAGGTCCTTGGAGGACTGCCAGTCAGAGTCCTGGGATGGCTGGTaGCTCCTGCTCTCTTCTCAGGAATACCTCCTGTCCCACCCAAAA +
Preference number: 1 (lower is better)
Translates to: HRSLEDCQSESWDGW*LLLSSQEYLLSHPK
Trigger: TTTTGGGTGGGACAGGAGGTATTCCTGAGAAGAGAGCAGGAGCCACCAGCCATCCCAGGACTCTGACTGGCAGTCCTCCAAGGACCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 90 bp CCTAACACACAGCACAGGTCCTTGGAGGACTGCCAGTCAGAGTCCTaGGATGGCTGGTGGCTCCTGCTCTCTTCTCAGGAATACCTCCTG +
Preference number: 1 (lower is better)
Translates to: PNTQHRSLEDCQSES*DGWWLLLSSQEYLL
Trigger: CAGGAGGTATTCCTGAGAAGAGAGCAGGAGCCACCAGCCATCCCAGGACTCTGACTGGCAGTCCTCCAAGGACCTGTGCTGTGTGTTAGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp TCCATTCTCTCCATTCCTCCCTTTCCATGCCTGTCGCCTGTCTCCTaGCTCATCTTTACTTCGCCGGCTTTGCTCCTGCCCGCTTCTCAG +
Preference number: 1 (lower is better)
Translates to: SILSIPPFPCLSPVS*LIFTSPALLLPASQ
Trigger: CTGAGAAGCGGGCAGGAGCAAAGCCGGCGAAGTAAAGATGAGGCAGGAGACAGGCGACAGGCATGGAAAGGGAGGAATGGAGAGAATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp ACAACACCAAGCTACCCTAACACACAGCACAGGTCCTTGGAGGACTaGCAGTCAGAGTCCTGGGATGGCTGGTGGCTCCTGCTCTCTTCT +
Preference number: 1 (lower is better)
Translates to: TTPSYPNTQHRSLED*QSESWDGWWLLLSS
Trigger: AGAAGAGAGCAGGAGCCACCAGCCATCCCAGGACTCTGACTGGCAGTCCTCCAAGGACCTGTGCTGTGTGTTAGGGTAGCTTGGTGTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 90 bp GGAAGACAAGGGCAGTGGCCAAAGCTCAGGAGGAGGTGTCTACCCTaGAGGAGAGAGGAGAAAATGTGGAGATGGGATCTGGAACGTTCC +
Preference number: 1 (lower is better)
Translates to: GRQGQWPKLRRRCLP*RREEKMWRWDLERS
Trigger: GGAACGTTCCAGATCCCATCTCCACATTTTCTCCTCTCTCCTCCAGGGTAGACACCTCCTCCTGAGCTTTGGCCACTGCCCTTGTCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 90 bp TCTCTCTCTCTCTCTCTCTCCATTCTCTCCATTCCTCCCTTTCCATaGCTGTCGCCTGTCTCCTGCCTCATCTTTACTTCGCCGGCTTTG +
Preference number: 1 (lower is better)
Translates to: SLSLSLSILSIPPFP*LSPVSCLIFTSPAL
Trigger: CAAAGCCGGCGAAGTAAAGATGAGGCAGGAGACAGGCGACAGGCATGGAAAGGGAGGAATGGAGAGAATGGAGAGAGAGAGAGAGAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 90 bp AGGAGGAGGTGTCTACCCTGGAGGAGAGAGGAGAAAATGTGGAGATaGGATCTGGAACGTTCCAAGTGTCAGGAATTCTGCCAGGAACCA +
Preference number: 1 (lower is better)
Translates to: RRRCLPWRREEKMWR*DLERSKCQEFCQEP
Trigger: TGGTTCCTGGCAGAATTCCTGACACTTGGAACGTTCCAGATCCCATCTCCACATTTTCTCCTCTCTCCTCCAGGGTAGACACCTCCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 90 bp GGGCAGCAAGTGTTCTTAGGAAAACAGGCTCTCCAAGCACACACATaGCTGCCCTCCTCAATCCCTAGCGTTTCCTCTTCACACACATAC +
Preference number: 1 (lower is better)
Translates to: GQQVFLGKQALQAHT*LPSSIPSVSSSHTY
Trigger: GTATGTGTGTGAAGAGGAAACGCTAGGGATTGAGGAGGGCAGCCATGTGTGTGCTTGGAGAGCCTGTTTTCCTAAGAACACTTGCTGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR TCA 90 bp ATTGCATTAAGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACT +
Preference number: 1 (lower is better)
Translates to: IALRMVVSHHVVAGI*TLDLRKSSRVLLPT
Trigger: AGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTTAATGCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR TCA 90 bp TCTCAGTCACCTCTGTCCCCTCACTTCACAGTGTGGGGCATCAGATaGTGGGAACCCACAACCTTTGAACCTCAGCCTGTTTGCTTAGTT +
Preference number: 1 (lower is better)
Translates to: SQSPLSPHFTVWGIR*WEPTTFEPQPVCLV
Trigger: AACTAAGCAAACAGGCTGAGGTTCAAAGGTTGTGGGTTCCCATCATCTGATGCCCCACACTGTGAAGTGAGGGGACAGAGGTGACTGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR CCA 90 bp GCATCAGATTGCATTAAGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTT +
Preference number: 1 (lower is better)
Translates to: ASDCIKDGCEPPCGC*DLNSGPSEEQSGAL
Trigger: AAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTTAATGCAATCTGATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR CCA 90 bp CCTCCATTTCCCACCTCCCAGGTTTCTTCATCTGCTGCCCATCCATaGAAAACCCATTCTAGTTCTTCACTTCTCCATCGTTGTGTGTGC +
Preference number: 1 (lower is better)
Translates to: PPFPTSQVSSSAAHP*KTHSSSSLLHRCVC
Trigger: GCACACACAACGATGGAGAAGTGAAGAACTAGAATGGGTTTTCCATGGATGGGCAGCAGATGAAGAAACCTGGGAGGTGGGAAATGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR TCA 90 bp CCCAACAACGGGAAGCTCTTGGTTAGTGATCAGAAACAGAGATGTTaGTGTCCATATCCTATCCTTCCCCAAAGGCTAACACCAGCTCCC +
Preference number: 1 (lower is better)
Translates to: PNNGKLLVSDQKQRC*CPYPILPQRLTPAP
Trigger: GGGAGCTGGTGTTAGCCTTTGGGGAAGGATAGGATATGGACATCAACATCTCTGTTTCTGATCACTAACCAAGAGCTTCCCGTTGTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 90 bp CTACGTCAACTGCCAGGAGGTCAGTTAGAGCCTCACCTGAGTTCTTaGCCGAAACATCCATTTTCTTTGTCCCTAACTCTTCTAAGCCTT +
Preference number: 1 (lower is better)
Translates to: LRQLPGGQLEPHLSS*PKHPFSLSLTLLSL
Trigger: AAGGCTTAGAAGAGTTAGGGACAAAGAAAATGGATGTTTCGGCCAAGAACTCAGGTGAGGCTCTAACTGACCTCCTGGCAGTTGACGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR TCA 90 bp AGGCCAGGCCAGCCTCAGGCTGGAACTAGCTTCCTCCTCCCACAGCCTCCAGAGGGGTGCAGGCTTGAATaGGGGAGGCAGAGGAGGCCC +
Preference number: 2 (lower is better)
Translates to: RPGQPQAGTSFLLPQPPEGCRLE*GRQRRP
Trigger: GGGCCTCCTCTGCCTCCCTCATTCAAGCCTGCACCC...CTCTGGAGGCTGTGGGAGGAGGAAGCTAGTTCCAGCCTGAGGCTGGCCTGGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp TGGACAGCCTATAGGAGGCACACATTCCTCGACACAAGGACCAGGCAGCAGGCCCAGAGGAGGCCCCGTTaGGGGGCTGGTGGCACCTGG +
Preference number: 2 (lower is better)
Translates to: WTAYRRHTFLDTRTRQQAQRRPR*GAGGTW
Trigger: CCAGGTGCCACCAGCCCCCCAACGGGGCCTCCTCTG...GGCCTGCTGCCTGGTCCTTGTGTCGAGGAATGTGTGCCTCCTATAGGCTGTCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR TCA 90 bp ACTCCTGCCCCTCTCGCCACTACCTGGACCCTCCCCTCTGGTTTGAAGCTGAGGTCCAAGCACTGCCCATaGGGTTGCAGACCCTGGGCT +
Preference number: 2 (lower is better)
Translates to: TPAPLATTWTLPSGLKLRSKHCP*GCRPWA
Trigger: AGCCCAGGGTCTGCAACCTCATGGGCAGTGCTTGGA...CCTCAGCTTCAAACCAGAGGGGAGGGTCCAGGTAGTGGCGAGAGGGGCAGGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 90 bp CCATGCCTGTCGCCTGTCTCCTGCCTCATCTTTACTTCGCCGGCTTaGCTCCTGCCCGCTTCTCAGTCAGTCACCCACTCCTGCCCCTCT +
Preference number: 2 (lower is better)
Translates to: PCLSPVSCLIFTSPA*LLPASQSVTHSCPS
Trigger: AGAGGGGCAGGAGTGGGTGACTGACTGAGAAGCGGGCAGGAGCAAAGCCGGCGAAGTAAAGATGAGGCAGGAGACAGGCGACAGGCATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp CACCTACCTCAGCTCCAAGCACTGCCCATGAGGTTGCAGACCCTGGGCTTATCGAGAGCGTCCTTTCCCTaGGGATCCCCAGGGACCTCC +
Preference number: 2 (lower is better)
Translates to: HLPQLQALPMRLQTLGLSRASFP*GSPGTS
Trigger: GGAGGTCCCTGGGGATCCCCAGGGAAAGGACGCTCT...CGATAAGCCCAGGGTCTGCAACCTCATGGGCAGTGCTTGGAGCTGAGGTAGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR TCA 90 bp GCCTCCTGGACAGCCTATAGGAGGCACACATTCCTCGACACAAGGACCAGGCAGGGCAGCCCTGCACACTaGAGGGGTCCAAGGAGATTG +
Preference number: 2 (lower is better)
Translates to: ASWTAYRRHTFLDTRTRQGSPAH*RGPRRL
Trigger: CAATCTCCTTGGACCCCTTCAGTGTGCAGGGCTGCC...CTGCCTGGTCCTTGTGTCGAGGAATGTGTGCCTCCTATAGGCTGTCCAGGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR TCA 90 bp ACTCCTGCCCCTCTCGCCACTACCTGGACCCTCCCCTCTGGTTTGAAGCTGAGGCGGCTCAGATTCTTTTaGGAGCTGGGTGCAGGCTTG +
Preference number: 2 (lower is better)
Translates to: TPAPLATTWTLPSGLKLRRLRFF*ELGAGL
Trigger: CAAGCCTGCACCCAGCTCTCAAAAGAATCTGAGCCG...CCTCAGCTTCAAACCAGAGGGGAGGGTCCAGGTAGTGGCGAGAGGGGCAGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR TCA 90 bp TTCCATGCCTGTCGCCTGTCTCCTGCCTCATCTTTACTTCGCCGGCTTTGCTCCAGCTGGGTGCAGGCTTaGATGAGGGAGGCAGAGGAG +
Preference number: 2 (lower is better)
Translates to: FHACRLSPASSLLRRLCSSWVQA*MREAEE
Trigger: CTCCTCTGCCTCCCTCATTCAAGCCTGCACCCAGCT...GGAGCAAAGCCGGCGAAGTAAAGATGAGGCAGGAGACAGGCGACAGGCATGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR TCA 90 bp GCCTCCTGGACAGCCTATAGGAGGCACACATTCCTCGACACAAGGACCAGGCAGGGGGCCAGTCACCAGTaGGATATCCCAGTAGGGAAG +
Preference number: 2 (lower is better)
Translates to: ASWTAYRRHTFLDTRTRQGASHQ*DIPVGK
Trigger: CTTCCCTACTGGGATATCTCACTGGTGACTGGCCCC...CTGCCTGGTCCTTGTGTCGAGGAATGTGTGCCTCCTATAGGCTGTCCAGGAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 90 bp CGGAGGAGGTCCGTGTGCAGCCAGTTCAAGATTTGGGTCTGGAGCTaGAACGCAGGAATGAGAGGGCAGCAGACGGGATATGCTGAGGTC +
Preference number: 2 (lower is better)
Translates to: RRRSVCSQFKIWVWS*NAGMRGQQTGYAEV
Trigger: GACCTCAGCATATCCCGTCTGCTGCCCTCTCATTCCTGCGTTCAAGCTCCAGACCCAAATCTTGAACTGGCTGCACACGGACCTCCTCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR GCA 90 bp ACTCCTGCCCCTCTCGCCACTACCTGGACCCTCCCCTCTGGTTTGAAGCTGAGGGGCCTGAGAAGTCTATaGTGTACAAAACAGGCCAGG +
Preference number: 2 (lower is better)
Translates to: TPAPLATTWTLPSGLKLRGLRSL*CTKQAR
Trigger: CCTGGCCTGTTTTGTACAGCATAGACTTCTCAGGCC...CCTCAGCTTCAAACCAGAGGGGAGGGTCCAGGTAGTGGCGAGAGGGGCAGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR GCA 90 bp TGCTCTCTTCTCAGGAATACCTCCTGTCCCACCCAAAAGCTAGCTCTGAGCCAGAAGTCCCCACCTCTGTaGCCCCTCTCCACAGCCACC +
Preference number: 2 (lower is better)
Translates to: CSLLRNTSCPTQKLALSQKSPPL*PLSTAT
Trigger: GGTGGCTGTGGAGAGGGGGCACAGAGGTGGGGACTT...CTGGCTCAGAGCTAGCTTTTGGGTGGGACAGGAGGTATTCCTGAGAAGAGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR GCA 90 bp CCTTCCTCTCTGTCATTAGCCCACCTCTATCTAACACAGCCTGGCCTGCTCGGTGGATCTCAAGGGCTCTaGCTTCTTGCCAGGCTGCCA +
Preference number: 2 (lower is better)
Translates to: PSSLSLAHLYLTQPGLLGGSQGL*LLARLP
Trigger: TGGCAGCCTGGCAAGAAGGCAGAGCCCTTGAGATCC...ACCGAGCAGGCCAGGCTGTGTTAGATAGAGGTGGGCTAATGACAGAGAGGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp CCCCTCCATTTCCCACCTCCCAGGTTTCTTCATCTGCTGCCCATCCATGGAAAAGGGGCTGGTGGCACCTaGAGCTTTGTGGCAGATGTG +
Preference number: 2 (lower is better)
Translates to: PLHFPPPRFLHLLPIHGKGAGGT*SFVADV
Trigger: CACATCTGCCACAAAGCTCCAGGTGCCACCAGCCCC...TTTTCCATGGATGGGCAGCAGATGAAGAAACCTGGGAGGTGGGAAATGGAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR TCA 90 bp CTCTCCAAGCACACACATGGCTGCCCTCCTCAATCCCTAGCGTTTCCTCTTCACCTCCCCCTCAGACTCTaGGGTGATGAAGGACTACCA +
Preference number: 2 (lower is better)
Translates to: LSKHTHGCPPQSLAFPLHLPLRL*GDEGLP
Trigger: TGGTAGTCCTTCATCACCTCAGAGTCTGAGGGGGAG...GTGAAGAGGAAACGCTAGGGATTGAGGAGGGCAGCCATGTGTGTGCTTGGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp TACCTGGACCCTCCCCTCTGGTTTGAAGCTGAGGATCTGACTTCCTGCTCCCTTCCATTCCCAGTCTCCTaGCTACCTGCTGAAGATGAC +
Preference number: 2 (lower is better)
Translates to: YLDPPLWFEAEDLTSCSLPFPVS*LPAEDD
Trigger: GTCATCTTCAGCAGGTAGCCAGGAGACTGGGAATGG...AAGGGAGCAGGAAGTCAGATCCTCAGCTTCAAACCAGAGGGGAGGGTCCAGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp TGGACAGCCTATAGGAGGCACACATTCCTCGACACAAGGACCAGGCAGCAGGCCTTCAAGATTTGGGTCTaGAGCTTGAACGCAGGAATG +
Preference number: 2 (lower is better)
Translates to: WTAYRRHTFLDTRTRQQAFKIWV*SLNAGM
Trigger: CATTCCTGCGTTCAAGCTCCAGACCCAAATCTTGAA...GGCCTGCTGCCTGGTCCTTGTGTCGAGGAATGTGTGCCTCCTATAGGCTGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp TTCCATGCCTGTCGCCTGTCTCCTGCCTCATCTTTACTTCGCCGGCTTTGCTCCTTGTGGCAGATGTGGTaGGACCATCATCAGCGAATA +
Preference number: 2 (lower is better)
Translates to: FHACRLSPASSLLRRLCSLWQMW*DHHQRI
Trigger: TATTCGCTGATGATGGTCCCACCACATCTGCCACAA...GGAGCAAAGCCGGCGAAGTAAAGATGAGGCAGGAGACAGGCGACAGGCATGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp CCACAGCCACCAACCCTGACAATGGGCCTGAGAAGTCTATGCTGTACAAAACAGGCACCTGGAGCTTTGTaGCAGATGTGGTGGGACCAT +
Preference number: 2 (lower is better)
Translates to: PQPPTLTMGLRSLCCTKQAPGAL*QMWWDH
Trigger: ATGGTCCCACCACATCTGCCACAAAGCTCCAGGTGC...CTGTTTTGTACAGCATAGACTTCTCAGGCCCATTGTCAGGGTTGGTGGCTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp CCTTCCTCTCTGTCATTAGCCCACCTCTATCTAACACAGCCTGGCCTGCTCGGTAGGAGGTGTCTACCCTaGAGGAGAGAGGAGAAAATG +
Preference number: 2 (lower is better)
Translates to: PSSLSLAHLYLTQPGLLGRRCLP*RREEKM
Trigger: CATTTTCTCCTCTCTCCTCCAGGGTAGACACCTCCT...ACCGAGCAGGCCAGGCTGTGTTAGATAGAGGTGGGCTAATGACAGAGAGGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp CCTTGTACACACACAGTTCTCTCCAAAGGATCAGAGCTACCGCAGACACCAAGAGGTTGGGACAAGAGCTaGGGAAGACAAGGGCAGTGG +
Preference number: 2 (lower is better)
Translates to: PCTHTVLSKGSELPQTPRGWDKS*GRQGQW
Trigger: CCACTGCCCTTGTCTTCCCCAGCTCTTGTCCCAACC...TCTTGGTGTCTGCGGTAGCTCTGATCCTTTGGAGAGAACTGTGTGTGTACAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 90 bp GATTGCATTAAGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCAC +
Preference number: 2 (lower is better)
Translates to: DCIKDGCEPPCGCWD*NSGPSEEQSGALTH
Trigger: GTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTTAATGCAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR-3UTR TCA 90 bp TGCTCTCTTCTCAGGAATACCTCCTGTCCCACCCAAAAGCTAGCTCTGAGCCAGGAGGCTGGACCCCATTaGAGCTATAACTGCTTTCTC +
Preference number: 2 (lower is better)
Translates to: CSLLRNTSCPTQKLALSQEAGPH*SYNCFL
Trigger: GAGAAAGCAGTTATAGCTTCAATGGGGTCCAGCCTC...CTGGCTCAGAGCTAGCTTTTGGGTGGGACAGGAGGTATTCCTGAGAAGAGAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR GCA 90 bp CCTTGTACACACACAGTTCTCTCCAAAGGATCAGAGCTACCGCAGACACCAAGACGGAGGAGGTCCGTGTaGAGCCAGTTCAAGATTTGG +
Preference number: 2 (lower is better)
Translates to: PCTHTVLSKGSELPQTPRRRRSV*SQFKIW
Trigger: CCAAATCTTGAACTGGCTGCACACGGACCTCCTCCG...TCTTGGTGTCTGCGGTAGCTCTGATCCTTTGGAGAGAACTGTGTGTGTACAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp TATAACTGCTTTCTCCTCTCCCCTCTCTGTCAAGAGCAAAGAAATCCGCTAACACAGGTAGGGTCCTGCTaGGGCAGCCTTGGGTCATGG +
Preference number: 2 (lower is better)
Translates to: YNCFLLSPLCQEQRNPLTQVGSC*GSLGSW
Trigger: CCATGACCCAAGGCTGCCCCAGCAGGACCCTACCTG...TGTTAGCGGATTTCTTTGCTCTTGACAGAGAGGGGAGAGGAGAAAGCAGTTATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 90 bp CAAGTTAGGCAGAAAAGTATCAAAGACGCAAGACAGTCTCTGCCCTaGGCAGATGTCCAGGGTGTAGGAAGCATGAGAAGGAGAGGGGTA +
Preference number: 2 (lower is better)
Translates to: QVRQKSIKDARQSLP*ADVQGVGSMRRRGV
Trigger: TACCCCTCTCCTTCTCATGCTTCCTACACCCTGGACATCTGCCAAGGGCAGAGACTGTCTTGCGTCTTTGATACTTTTCTGCCTAACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 90 bp CCATTTTCTTTGTCCCTAACTCTTCTAAGCCTTCAAGACCACATTTaGGTTCCCATTGCTCCCTCTCTTCTTTCCCCGCGATACCCTGGG +
Preference number: 2 (lower is better)
Translates to: PFSLSLTLLSLQDHI*VPIAPSLLSPRYPG
Trigger: CCCAGGGTATCGCGGGGAAAGAAGAGAGGGAGCAATGGGAACCAAAATGTGGTCTTGAAGGCTTAGAAGAGTTAGGGACAAAGAAAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 90 bp CCTACGTCAACTGCCAGGAGGTCAGTTAGAGCCTCACCTGAGTTCTaGGCCGAAACATCCATTTTCTTTGTCCCTAACTCTTCTAAGCCT +
Preference number: 2 (lower is better)
Translates to: PTSTARRSVRASPEF*AETSIFFVPNSSKP
Trigger: AGGCTTAGAAGAGTTAGGGACAAAGAAAATGGATGTTTCGGCCAAGAACTCAGGTGAGGCTCTAACTGACCTCCTGGCAGTTGACGTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR GCA 90 bp CCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTTTGAGTGTATTTATGTaGACTATGTGGACAGTGCCA +
Preference number: 2 (lower is better)
Translates to: PPCGCWDLNSGPSEEQSGLSVFM*TMWTVP
Trigger: TGGCACTGTCCACATAGTGCACATAAATACACTCAA...ACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR-3UTR CCA 90 bp TTGTACACACACAGTTCTCTCCAAAGGATCAGAGCTACCGCAGACACCAAGAAGAGCCAGTTCAAGATTTaGGTCTGGAGCTTGAACGCA +
Preference number: 2 (lower is better)
Translates to: LYTHSSLQRIRATADTKKSQFKI*VWSLNA
Trigger: TGCGTTCAAGCTCCAGACCCAAATCTTGAACTGGCT...CTTCTTGGTGTCTGCGGTAGCTCTGATCCTTTGGAGAGAACTGTGTGTGTACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp CCCCTCCATTTCCCACCTCCCAGGTTTCTTCATCTGCTGCCCATCCATGGAAAATTTTCTATGATTAGATaGCTCTGCCACCAGATCCAT +
Preference number: 2 (lower is better)
Translates to: PLHFPPPRFLHLLPIHGKFSMIR*LCHQIH
Trigger: ATGGATCTGGTGGCAGAGCCATCTAATCATAGAAAA...TTTTCCATGGATGGGCAGCAGATGAAGAAACCTGGGAGGTGGGAAATGGAGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp TTTCTTCATCTGCTGCCCATCCATGGAAAACCCATTCTAGTTCTTCACTTCTCCCTGCCACCCCTCCACTaGAAACTGGAGGCTTTTCTA +
Preference number: 2 (lower is better)
Translates to: FLHLLPIHGKPILVLHFSLPPLH*KLEAFL
Trigger: TAGAAAAGCCTCCAGTTTCCAGTGGAGGGGTGGCAG...GGAGAAGTGAAGAACTAGAATGGGTTTTCCATGGATGGGCAGCAGATGAAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CCA 90 bp CCTTGTACACACACAGTTCTCTCCAAAGGATCAGAGCTACCGCAGACACCAAGAAGAGAGGAGAAAATGTaGAGATGGGATCTGGAACGT +
Preference number: 2 (lower is better)
Translates to: PCTHTVLSKGSELPQTPRREEKM*RWDLER
Trigger: ACGTTCCAGATCCCATCTCCACATTTTCTCCTCTCT...TCTTGGTGTCTGCGGTAGCTCTGATCCTTTGGAGAGAACTGTGTGTGTACAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 90 bp CAGTTAGAGCCTCACCTGAGTTCTTGGCCGAAACATCCATTTTCTTaGTCCCTAACTCTTCTAAGCCTTCAAGACCACATTTTGGTTCCC +
Preference number: 2 (lower is better)
Translates to: QLEPHLSSWPKHPFS*SLTLLSLQDHILVP
Trigger: GGGAACCAAAATGTGGTCTTGAAGGCTTAGAAGAGTTAGGGACAAAGAAAATGGATGTTTCGGCCAAGAACTCAGGTGAGGCTCTAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 90 bp AATCCAGCAGCAGAAGGGGGCGGGACCAAAAGAAATGTTACCAAATaGGACAGTGAACATCTAAGACACATTCAGACAGAACTTACTAGT +
Preference number: 2 (lower is better)
Translates to: NPAAEGGGTKRNVTK*DSEHLRHIQTELTS
Trigger: ACTAGTAAGTTCTGTCTGAATGTGTCTTAGATGTTCACTGTCCAATTTGGTAACATTTCTTTTGGTCCCGCCCCCTTCTGCTGCTGGATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR TCA 90 bp ACACACTGCTCAGTCACTTCTGAACTTTCCTTTTCCCTCTCCACATATAGTTTCGCCAGAAGAGGACGTTaGATCTCTAGAACTAGACTT +
Preference number: 2 (lower is better)
Translates to: THCSVTSELSFSLSTYSFARRGR*ISRTRL
Trigger: AAGTCTAGTTCTAGAGATTCAACGTCCTCTTCTGGC...GAAACTATATGTGGAGAGGGAAAAGGAAAGTTCAGAAGTGACTGAGCAGTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGCCAGGGGACAAATTTTCCAGGAATCGTTTAAGTGTATaGGTGATTTTGCTTGAGTGT +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVCKPGDKFSRNRLSV*VILLEC
Trigger: ACACTCAAGCAAAATCACCCATACACTTAAACGATT...CCTGGAAAATTTGTCCCCTGGCTTACACACACACACACACACACACACACACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR-3UTR GCA 90 bp CACACTGCTCAGTCACTTCTGAACTTTCCTTTTCCCTCTCCACATATAGTTTCTGAACCTCAGCCTGTTTaGTTAGTTTTCAGGTTCTCT +
Preference number: 2 (lower is better)
Translates to: HTAQSLLNFPFPSPHIVSEPQPV*LVFRFS
Trigger: AGAGAACCTGAAAACTAAGCAAACAGGCTGAGGTTC...AGAAACTATATGTGGAGAGGGAAAAGGAAAGTTCAGAAGTGACTGAGCAGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR GCA 72 bp GGGCTCTGCCTTCTTGCCAGGCTGCCACCTAGCCCCTaGCTCTCTTCAGAGCCCGGAGGAGGTCCGTGTGCA +
Preference number: 3 (lower is better)
Translates to: GLCLLARLPPSP*LSSEPGGGPCA
Trigger: TGCACACGGACCTCCTCCGGGCTCTGAAGAGAGGCAGGGGCTAGGTGGCAGCCTGGCAAGAAGGCAGAGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp ATCAGGACCGGCAGGCAAGGACGCAGCAGGCAGCCCTaGACACTGAAGGGGTCCAAGGAGATTGCGCGGCAG +
Preference number: 3 (lower is better)
Translates to: IRTGRQGRSRQP*TLKGSKEIARQ
Trigger: CTGCCGCGCAATCTCCTTGGACCCCTTCAGTGTGCAGGGCTGCCTGCTGCGTCCTTGCCTGCCGGTCCTGAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp CTGCAGACCTCAGCCTGCCAGCCTGAAACTCCACACTaGACCGCTGGGCAGCAGCTGGTTGGCTGGAGAGTG +
Preference number: 3 (lower is better)
Translates to: LQTSACQPETPH*TAGQQLVGWRV
Trigger: CACTCTCCAGCCAACCAGCTGCTGCCCAGCGGTGCAGTGTGGAGTTTCAGGCTGGCAGGCTGAGGTCTGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp TCTGGCTCCAGGGAGGGACCAGGTTGGGACAAGAGCTaGGGAAGACAAGGGCAGTGGCCAAAGCTCAGGAGG +
Preference number: 3 (lower is better)
Translates to: SGSREGPGWDKS*GRQGQWPKLRR
Trigger: CCTCCTGAGCTTTGGCCACTGCCCTTGTCTTCCCCAGCTCTTGTCCCAACCTGGTCCCTCCCTGGAGCCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CAA 90 bp ATGCCTGTCGCCTGTCTCCTGCCTCATCTTTACTTCGCCGGCTTTGCTCCTGCCAAGGGCTCTGCCTTCTaGCCAGGCTGCCACCTAGCC +
Preference number: 3 (lower is better)
Translates to: MPVACLLPHLYFAGFAPAKGSAF*PGCHLA
Trigger: GGCTAGGTGGCAGCCTGGCAAGAAGGCAGAGCCCTT...GGCAGGAGCAAAGCCGGCGAAGTAAAGATGAGGCAGGAGACAGGCGACAGGCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp TCCCTCTCTTCTTTCCCCGCGATACCCTGGGGCTCCTaGAGACTGCAGACCTCAGCCTGCCAGCCTGAAACT +
Preference number: 3 (lower is better)
Translates to: SLSSFPAIPWGS*RLQTSACQPET
Trigger: AGTTTCAGGCTGGCAGGCTGAGGTCTGCAGTCTGCAGGAGCCCCAGGGTATCGCGGGGAAAGAAGAGAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp GTAGGGTCCTGCTGGGGCAGCCTTGGGTCATGGGCCTaGCTCAGGAATCCTAACTCAGCTCCAAGTCCTCTG +
Preference number: 3 (lower is better)
Translates to: VGSCWGSLGSWA*LRNPNSAPSPL
Trigger: CAGAGGACTTGGAGCTGAGTTAGGATTCCTGAGCCAGGCCCATGACCCAAGGCTGCCCCAGCAGGACCCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp CCAGGAACCAGCATCAGATTCCAGGTAGGGTCCTGCTaGGGCAGCCTTGGGTCATGGGCCTGGCTCAGGAAT +
Preference number: 3 (lower is better)
Translates to: PGTSIRFQVGSC*GSLGSWAWLRN
Trigger: ATTCCTGAGCCAGGCCCATGACCCAAGGCTGCCCCAGCAGGACCCTACCTGGAATCTGATGCTGGTTCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CAA 90 bp CGCCACTACCTGGACCCTCCCCTCTGGTTTGAAGCTGAGGATCTGACTTCCTGCGTGGCACCTGGAGCTTaGTGGCAGATGTGGTGGGAC +
Preference number: 3 (lower is better)
Translates to: RHYLDPPLWFEAEDLTSCVAPGA*WQMWWD
Trigger: GTCCCACCACATCTGCCACAAAGCTCCAGGTGCCAC...GCAGGAAGTCAGATCCTCAGCTTCAAACCAGAGGGGAGGGTCCAGGTAGTGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CAA 90 bp GCCTCCTGGACAGCCTATAGGAGGCACACATTCCTCGACACAAGGACCAGGCAGGCACTGCCCATGAGGTaGCAGACCCTGGGCTTATCG +
Preference number: 3 (lower is better)
Translates to: ASWTAYRRHTFLDTRTRQALPMR*QTLGLS
Trigger: CGATAAGCCCAGGGTCTGCAACCTCATGGGCAGTGC...CTGCCTGGTCCTTGTGTCGAGGAATGTGTGCCTCCTATAGGCTGTCCAGGAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR TCA 72 bp CACAGCCTCCAGAGCCCGTGTCTCCCCCTCAGACTCTaGGGTGATGAAGGACTACCAGCAGCAGGAAGGAAG +
Preference number: 3 (lower is better)
Translates to: HSLQSPCLPLRL*GDEGLPAAGRK
Trigger: CTTCCTTCCTGCTGCTGGTAGTCCTTCATCACCTCAGAGTCTGAGGGGGAGACACGGGCTCTGGAGGCTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp TCTCCTGCCTCATCTTTACTTCGCCGGCTTTGCTCCTaGCCGCTTCTCAGTCAGTCACCCACTCCTGCCCCT +
Preference number: 3 (lower is better)
Translates to: SPASSLLRRLCS*PLLSQSPTPAP
Trigger: AGGGGCAGGAGTGGGTGACTGACTGAGAAGCGGGCAGGAGCAAAGCCGGCGAAGTAAAGATGAGGCAGGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp AGCTACCCTAACACACAGCACAGGTCCTTGGAGGACTaGCAGTCAGAGTCCTGGGATGGCTGGTGGCTCCTG +
Preference number: 3 (lower is better)
Translates to: SYPNTQHRSLED*QSESWDGWWLL
Trigger: CAGGAGCCACCAGCCATCCCAGGACTCTGACTGGCAGTCCTCCAAGGACCTGTGCTGTGTGTTAGGGTAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp TTCCAGGTAGGGTCCTGCTGGGGCAGCCTTGGGTCATaGGCCTGGCTCAGGAATCCTAACTCAGCTCCAAGT +
Preference number: 3 (lower is better)
Translates to: FQVGSCWGSLGS*AWLRNPNSAPS
Trigger: ACTTGGAGCTGAGTTAGGATTCCTGAGCCAGGCCCATGACCCAAGGCTGCCCCAGCAGGACCCTACCTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp ACTCCACACTGCACCGCTGGGCAGCAGCTGGTTGGCTaGAGAGTGGCAAGAACACTGGTAGACGACTCCTCA +
Preference number: 3 (lower is better)
Translates to: TPHCTAGQQLVG*RVARTLVDDSS
Trigger: TGAGGAGTCGTCTACCAGTGTTCTTGCCACTCTCCAGCCAACCAGCTGCTGCCCAGCGGTGCAGTGTGGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp CAGCACAGGTCCTTGGAGGACTGCCAGTCAGAGTCCTaGGATGGCTGGTGGCTCCTGCTCTCTTCTCAGGAA +
Preference number: 3 (lower is better)
Translates to: QHRSLEDCQSES*DGWWLLLSSQE
Trigger: TTCCTGAGAAGAGAGCAGGAGCCACCAGCCATCCCAGGACTCTGACTGGCAGTCCTCCAAGGACCTGTGCTG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CAA 90 bp ATGCCTGTCGCCTGTCTCCTGCCTCATCTTTACTTCGCCGGCTTTGCTCCTGCCAGACAGTCTCTGCCCTaGGCAGATGTCCAGGGTGTA +
Preference number: 3 (lower is better)
Translates to: MPVACLLPHLYFAGFAPARQSLP*ADVQGV
Trigger: TACACCCTGGACATCTGCCAAGGGCAGAGACTGTCT...GGCAGGAGCAAAGCCGGCGAAGTAAAGATGAGGCAGGAGACAGGCGACAGGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR TCA 72 bp TGCACACACACCTACCTCAGCTCCAAGCACTGCCCATaGGGTTGCAGACCCTGGGCTTATCGCAAGGCGAGA +
Preference number: 3 (lower is better)
Translates to: CTHTYLSSKHCP*GCRPWAYRKAR
Trigger: TCTCGCCTTGCGATAAGCCCAGGGTCTGCAACCTCATGGGCAGTGCTTGGAGCTGAGGTAGGTGTGTGTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp CAGCCACCAACCCTGACAATGGGCCTGAGAAGTCTATaGTGTACAAAACAGGCCAGGCTCGAGGGGCCAGTC +
Preference number: 3 (lower is better)
Translates to: QPPTLTMGLRSL*CTKQARLEGPV
Trigger: GACTGGCCCCTCGAGCCTGGCCTGTTTTGTACAGCATAGACTTCTCAGGCCCATTGTCAGGGTTGGTGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp CCTCCCCTCTGGTTTGAAGCTGAGGATCTGACTTCCTaGTCCCTTCTCCTTCTGACAAGGCTCCCCCACCCT +
Preference number: 3 (lower is better)
Translates to: PPLWFEAEDLTS*SLLLLTRLPHP
Trigger: AGGGTGGGGGAGCCTTGTCAGAAGGAGAAGGGAGCAGGAAGTCAGATCCTCAGCTTCAAACCAGAGGGGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp TCCATTCCTCCCTTTCCATGCCTGTCGCCTGTCTCCTaGCTCATCTTTACTTCGCCGGCTTTGCTCCTGCCC +
Preference number: 3 (lower is better)
Translates to: SIPPFPCLSPVS*LIFTSPALLLP
Trigger: GGGCAGGAGCAAAGCCGGCGAAGTAAAGATGAGGCAGGAGACAGGCGACAGGCATGGAAAGGGAGGAATGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp ACTGCCAGTCAGAGTCCTGGGATGGCTGGTGGCTCCTaGTCTCTTCTCAGGAATACCTCCTGTCCCACCCAA +
Preference number: 3 (lower is better)
Translates to: TASQSPGMAGGS*SLLRNTSCPTQ
Trigger: TTGGGTGGGACAGGAGGTATTCCTGAGAAGAGAGCAGGAGCCACCAGCCATCCCAGGACTCTGACTGGCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp CAGGTCCTTGGAGGACTGCCAGTCAGAGTCCTGGGATaGCTGGTGGCTCCTGCTCTCTTCTCAGGAATACCT +
Preference number: 3 (lower is better)
Translates to: QVLGGLPVRVLG*LVAPALFSGIP
Trigger: AGGTATTCCTGAGAAGAGAGCAGGAGCCACCAGCCATCCCAGGACTCTGACTGGCAGTCCTCCAAGGACCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR TCA 72 bp AGTAGGAAAGAGTCTGGCCCTCCTGGGGCAGTGTGTTaGGTAAGTCTCTTTAGGCGATCAGGACCGGCAGGC +
Preference number: 3 (lower is better)
Translates to: SRKESGPPGAVC*VSLFRRSGPAG
Trigger: GCCTGCCGGTCCTGATCGCCTAAAGAGACTTACTCAACACACTGCCCCAGGAGGGCCAGACTCTTTCCTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp GGGCAGTGGCCAAAGCTCAGGAGGAGGTGTCTACCCTaGAGGAGAGAGGAGAAAATGTGGAGATGGGATCTG +
Preference number: 3 (lower is better)
Translates to: GQWPKLRRRCLP*RREEKMWRWDL
Trigger: CAGATCCCATCTCCACATTTTCTCCTCTCTCCTCCAGGGTAGACACCTCCTCCTGAGCTTTGGCCACTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR TCA 72 bp CCTATCCTTTCCCCCTCAGCACGGCTCAGATTCTTTTaGGAGCTGGGTGCAGGCTTGAATGAGGGAGGCAGA +
Preference number: 3 (lower is better)
Translates to: PILSPSARLRFF*ELGAGLNEGGR
Trigger: TCTGCCTCCCTCATTCAAGCCTGCACCCAGCTCTCAAAAGAATCTGAGCCGTGCTGAGGGGGAAAGGATAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR TCA 72 bp AGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTC +
Preference number: 3 (lower is better)
Translates to: RMVVSHHVVAGI*TLDLRKSSRVL
Trigger: GAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR-3UTR CAA 90 bp TACCTGGACCCTCCCCTCTGGTTTGAAGCTGAGGATCTGACTTCCTGCTCCCTTACGGCTCAGATTCTTTaGAGAGCTGGGTGCAGGCTT +
Preference number: 3 (lower is better)
Translates to: YLDPPLWFEAEDLTSCSLTAQIL*RAGCRL
Trigger: AAGCCTGCACCCAGCTCTCAAAAGAATCTGAGCCGT...AAGGGAGCAGGAAGTCAGATCCTCAGCTTCAAACCAGAGGGGAGGGTCCAGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp CTACCGCAGACACCAAGAAGTCAATTCTATCCTGTCTaGCAAAGCACAAGGGACCCCCTGGGCAGCAAGTGT +
Preference number: 3 (lower is better)
Translates to: LPQTPRSQFYPV*QSTRDPLGSKC
Trigger: ACACTTGCTGCCCAGGGGGTCCCTTGTGCTTTGGCAGACAGGATAGAATTGACTTCTTGGTGTCTGCGGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CAA 90 bp TCTCCACATATAGTTTCTCAGTCACCTCTGTCCCCTCACTTCACAGTGTGGGGCGGGAACCCACAACCTTaGAACCTCAGCCTGTTTGCT +
Preference number: 3 (lower is better)
Translates to: SPHIVSQSPLSPHFTVWGGNPQP*NLSLFA
Trigger: AGCAAACAGGCTGAGGTTCAAAGGTTGTGGGTTCCC...GCCCCACACTGTGAAGTGAGGGGACAGAGGTGACTGAGAAACTATATGTGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR TCA 72 bp TCTAAACAGTGCTCTGGAGCAGAGGCTGGACCCCATTaGAGCTATAACTGCTTTCTCCTCTCCCCTCTCTGT +
Preference number: 3 (lower is better)
Translates to: SKQCSGAEAGPH*SYNCFLLSPLC
Trigger: ACAGAGAGGGGAGAGGAGAAAGCAGTTATAGCTTCAATGGGGTCCAGCCTCTGCTCCAGAGCACTGTTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp CCTGGAGGAGAGAGGAGAAAATGTGGAGATGGGATCTaGAACGTTCCAAGTGTCAGGAATTCTGCCAGGAAC +
Preference number: 3 (lower is better)
Translates to: PGGERRKCGDGI*NVPSVRNSARN
Trigger: GTTCCTGGCAGAATTCCTGACACTTGGAACGTTCCAGATCCCATCTCCACATTTTCTCCTCTCTCCTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp GTGTTCTTAGGAAAACAGGCTCTCCAAGCACACACATaGCTGCCCTCCTCAATCCCTAGCGTTTCCTCTTCA +
Preference number: 3 (lower is better)
Translates to: VFLGKQALQAHT*LPSSIPSVSSS
Trigger: TGAAGAGGAAACGCTAGGGATTGAGGAGGGCAGCCATGTGTGTGCTTGGAGAGCCTGTTTTCCTAAGAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp AATTCTATCCTGTCTGCCAAAGCACAAGGGACCCCCTaGGCAGCAAGTGTTCTTAGGAAAACAGGCTCTCCA +
Preference number: 3 (lower is better)
Translates to: NSILSAKAQGTP*AASVLRKTGSP
Trigger: TGGAGAGCCTGTTTTCCTAAGAACACTTGCTGCCCAGGGGGTCCCTTGTGCTTTGGCAGACAGGATAGAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CCA 72 bp TGCATTAAGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCG +
Preference number: 3 (lower is better)
Translates to: CIKDGCEPPCGC*DLNSGPSEEQS
Trigger: CGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTTAATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR-3UTR CAA 90 bp TTGTACACACACAGTTCTCTCCAAAGGATCAGAGCTACCGCAGACACCAAGAAGATTTGGGTCTGGAGCTaGAACGCAGGAATGAGAGGG +
Preference number: 3 (lower is better)
Translates to: LYTHSSLQRIRATADTKKIWVWS*NAGMRG
Trigger: CCCTCTCATTCCTGCGTTCAAGCTCCAGACCCAAAT...CTTCTTGGTGTCTGCGGTAGCTCTGATCCTTTGGAGAGAACTGTGTGTGTACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CAA 90 bp TGCTCTCTTCTCAGGAATACCTCCTGTCCCACCCAAAAGCTAGCTCTGAGCCAGAACAACGGGAAGCTCTaGGTTAGTGATCAGAAACAG +
Preference number: 3 (lower is better)
Translates to: CSLLRNTSCPTQKLALSQNNGKL*VSDQKQ
Trigger: CTGTTTCTGATCACTAACCAAGAGCTTCCCGTTGTT...CTGGCTCAGAGCTAGCTTTTGGGTGGGACAGGAGGTATTCCTGAGAAGAGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp GTGTCCTCGGAGACATTATGTTTGATGACGTTCGTCTaGCACCCCTCCACTGGAAACTGGAGGCTTTTCTAT +
Preference number: 3 (lower is better)
Translates to: VSSETLCLMTFV*HPSTGNWRLFY
Trigger: ATAGAAAAGCCTCCAGTTTCCAGTGGAGGGGTGGCAGACGAACGTCATCAAACATAATGTCTCCGAGGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp AAGAACACTGGTAGACGACTCCTCAGAGGGAACTCATaGCCTTCCTCTCTGTCATTAGCCCACCTCTATCTA +
Preference number: 3 (lower is better)
Translates to: KNTGRRLLRGNS*PSSLSLAHLYL
Trigger: TAGATAGAGGTGGGCTAATGACAGAGAGGAAGGGCATGAGTTCCCTCTGAGGAGTCGTCTACCAGTGTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp GATTGCATTAAGGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: DCIKDGCEPPCG*WDLNSGPSEEQ
Trigger: CTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTTAATGCAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR CCA 72 bp CCCACCTCCCAGGTTTCTTCATCTGCTGCCCATCCATaGAAAACCCATTCTAGTTCTTCACTTCTCCATCGT +
Preference number: 3 (lower is better)
Translates to: PTSQVSSSAAHP*KTHSSSSLLHR
Trigger: ACGATGGAGAAGTGAAGAACTAGAATGGGTTTTCCATGGATGGGCAGCAGATGAAGAAACCTGGGAGGTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR TCA 72 bp AGTGTGGGGCATCAGATGATGGGAACCCACAACCTTTaGACCTCAGCCTGTTTGCTTAGTTTTCAGGTTCTC +
Preference number: 3 (lower is better)
Translates to: SVGHQMMGTHNL*TSACLLSFQVL
Trigger: GAGAACCTGAAAACTAAGCAAACAGGCTGAGGTTCAAAGGTTGTGGGTTCCCATCATCTGATGCCCCACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR CCA 72 bp CTGCCAGGAGGTCAGTTAGAGCCTCACCTGAGTTCTTaGCCGAAACATCCATTTTCTTTGTCCCTAACTCTT +
Preference number: 3 (lower is better)
Translates to: LPGGQLEPHLSS*PKHPFSLSLTL
Trigger: AAGAGTTAGGGACAAAGAAAATGGATGTTTCGGCCAAGAACTCAGGTGAGGCTCTAACTGACCTCCTGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR GCA 72 bp TGTTTGCTTAGTTTTCAGGTTCTCTGTGCGCATGCGTaGATGCTTGACTGTGTAAGAGTCTCTCTCTCTCTC +
Preference number: 3 (lower is better)
Translates to: CLLSFQVLCAHA*MLDCVRVSLSL
Trigger: GAGAGAGAGAGAGACTCTTACACAGTCAAGCATGCACGCATGCGCACAGAGAACCTGAAAACTAAGCAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR CCA 72 bp CCTCCACTGGAAACTGGAGGCTTTTCTATGATTAGATaGCTCTGCCACCAGATCCATAAGGTAGCCAAAGAT +
Preference number: 3 (lower is better)
Translates to: PPLETGGFSMIR*LCHQIHKVAKD
Trigger: ATCTTTGGCTACCTTATGGATCTGGTGGCAGAGCCATCTAATCATAGAAAAGCCTCCAGTTTCCAGTGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR-3UTR CAA 90 bp ACACACTGCTCAGTCACTTCTGAACTTTCCTTTTCCCTCTCCACATATAGTTTCAGTGTATGGGTGATTTaGCTTGAGTGTATTTATGTG +
Preference number: 3 (lower is better)
Translates to: THCSVTSELSFSLSTYSFSVWVI*LECIYV
Trigger: CACATAAATACACTCAAGCAAAATCACCCATACACT...GAAACTATATGTGGAGAGGGAAAAGGAAAGTTCAGAAGTGACTGAGCAGTGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR GCA 90 bp ACTCCTGCCCCTCTCGCCACTACCTGGACCCTCCCCTCTGGTTTGAAGCTGAGGTGTTTGAGCTCCTCCTaGAGCAGGTCCGTCTGCCGG +
Preference number: 4 (lower is better)
Translates to: TPAPLATTWTLPSGLKLRCLSSS*SRSVCR
Trigger: CCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACA...CCTCAGCTTCAAACCAGAGGGGAGGGTCCAGGTAGTGGCGAGAGGGGCAGGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR TCA 90 bp TGGACAGCCTATAGGAGGCACACATTCCTCGACACAAGGACCAGGCAGCAGGCCGTACGCCCAGCGCACTaGACAGTCCCCCAGGGAGTA +
Preference number: 4 (lower is better)
Translates to: WTAYRRHTFLDTRTRQQAVRPAH*TVPQGV
Trigger: TACTCCCTGGGGGACTGTTCAGTGCGCTGGGCGTAC...GGCCTGCTGCCTGGTCCTTGTGTCGAGGAATGTGTGCCTCCTATAGGCTGTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR GCA 90 bp GCCTCCTGGACAGCCTATAGGAGGCACACATTCCTCGACACAAGGACCAGGCAGGGTCCGTCTGCCGGTTaGCCAGCACGAAGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: ASWTAYRRHTFLDTRTRQGPSAG*PARRQG
Trigger: TCCTTGCCTTCGTGCTGGGCAACCGGCAGACGGACC...CTGCCTGGTCCTTGTGTCGAGGAATGTGTGCCTCCTATAGGCTGTCCAGGAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR CCA 90 bp GCCTCCTGGACAGCCTATAGGAGGCACACATTCCTCGACACAAGGACCAGGCAGCGAAGTAGCCAGGCTTaGGAGTGCTCACGCTGTCGC +
Preference number: 4 (lower is better)
Translates to: ASWTAYRRHTFLDTRTRQRSSQA*ECSRCR
Trigger: GCGACAGCGTGAGCACTCCCAAGCCTGGCTACTTCG...CTGCCTGGTCCTTGTGTCGAGGAATGTGTGCCTCCTATAGGCTGTCCAGGAGGC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR TCA 90 bp GGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCGTACGCCCAGCGCACTaGACAGTCCCCCAGGGAGTA +
Preference number: 4 (lower is better)
Translates to: GCWDLNSGPSEEQSGALTVRPAH*TVPQGV
Trigger: TACTCCCTGGGGGACTGTTCAGTGCGCTGGGCGTAC...GGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR GCA 90 bp CTCTCCAAGCACACACATGGCTGCCCTCCTCAATCCCTAGCGTTTCCTCTTCACAGCCAGGCTTGGGAGTaGTCACGCTGTCGCCTACCC +
Preference number: 4 (lower is better)
Translates to: LSKHTHGCPPQSLAFPLHSQAWE*SRCRLP
Trigger: GGGTAGGCGACAGCGTGAGCACTCCCAAGCCTGGCT...GTGAAGAGGAAACGCTAGGGATTGAGGAGGGCAGCCATGTGTGTGCTTGGAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR GCA 90 bp TGCTCTCTTCTCAGGAATACCTCCTGTCCCACCCAAAAGCTAGCTCTGAGCCAGGGCCCGCTAGCCCGCTaGCCACGCAGTAGTGGAAGA +
Preference number: 4 (lower is better)
Translates to: CSLLRNTSCPTQKLALSQGPLAR*PRSSGR
Trigger: TCTTCCACTACTGCGTGGGCAGCGGGCTAGCGGGCC...CTGGCTCAGAGCTAGCTTTTGGGTGGGACAGGAGGTATTCCTGAGAAGAGAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR GCA 90 bp CCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGGTCCGTCTGCCGGTTaGCCAGCACGAAGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: PPCGCWDLNSGPSEEQSGGPSAG*PARRQG
Trigger: TCCTTGCCTTCGTGCTGGGCAACCGGCAGACGGACC...ACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR GCA 90 bp CCTTCCTCTCTGTCATTAGCCCACCTCTATCTAACACAGCCTGGCCTGCTCGGTTGCAGCAGGTCCGTCTaGCGGTTGCCCAGCACGAAG +
Preference number: 4 (lower is better)
Translates to: PSSLSLAHLYLTQPGLLGCSRSV*RLPSTK
Trigger: CTTCGTGCTGGGCAACCGGCAGACGGACCTGCTGCA...ACCGAGCAGGCCAGGCTGTGTTAGATAGAGGTGGGCTAATGACAGAGAGGAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR GCA 90 bp GGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCTGCAGCAGGTCCGTCTaGCGGTTGCCCAGCACGAAG +
Preference number: 4 (lower is better)
Translates to: GCWDLNSGPSEEQSGALTCSRSV*RLPSTK
Trigger: CTTCGTGCTGGGCAACCGGCAGACGGACCTGCTGCA...GGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR TCA 90 bp CTGCAGGAGAAGAGAGATCTTCTCATCTGCCCTTTCCTAACACACGCACACACAAGAAGGCGGCCGCCTTaGAGGCGCTGGACGGGATGG +
Preference number: 4 (lower is better)
Translates to: LQEKRDLLICPFLTHAHTRRRPP*RRWTGW
Trigger: CCATCCCGTCCAGCGCCTTCAAGGCGGCCGCCTTCT...TGTGTGTGCGTGTGTTAGGAAAGGGCAGATGAGAAGATCTCTCTTCTCCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR TCA 90 bp TACCTGGACCCTCCCCTCTGGTTTGAAGCTGAGGATCTGACTTCCTGCTCCCTTCAGGGTCCCTGTGTGTaGGCAACAGGGCATGGTAGG +
Preference number: 4 (lower is better)
Translates to: YLDPPLWFEAEDLTSCSLQGPCV*ATGHGR
Trigger: CCTACCATGCCCTGTTGCTCACACACAGGGACCCTG...AAGGGAGCAGGAAGTCAGATCCTCAGCTTCAAACCAGAGGGGAGGGTCCAGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR GCA 90 bp TCAGTCACCTCTGTCCCCTCACTTCACAGTGTGGGGCATCAGATGATGGGAACCAGGGCTGCCAGGAGCTaGATCCAGGCGCAGATCTTG +
Preference number: 4 (lower is better)
Translates to: SVTSVPSLHSVGHQMMGTRAARS*IQAQIL
Trigger: CAAGATCTGCGCCTGGATGCAGCTCCTGGCAGCCCT...GGTTCCCATCATCTGATGCCCCACACTGTGAAGTGAGGGGACAGAGGTGACTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR GCA 90 bp TGCTCTCTTCTCAGGAATACCTCCTGTCCCACCCAAAAGCTAGCTCTGAGCCAGAGGGCTGCCAGGAGCTaGATCCAGGCGCAGATCTTG +
Preference number: 4 (lower is better)
Translates to: CSLLRNTSCPTQKLALSQRAARS*IQAQIL
Trigger: CAAGATCTGCGCCTGGATGCAGCTCCTGGCAGCCCT...CTGGCTCAGAGCTAGCTTTTGGGTGGGACAGGAGGTATTCCTGAGAAGAGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 72 bp ACCAGGCAGCAGGCCGTGTCCTCGGAGACATTATGTTaGATGACGTTCGTCTGCCACCCCTCCACTGGAAAC +
Preference number: 4 (lower is better)
Translates to: TRQQAVSSETLC*MTFVCHPSTGN
Trigger: GTTTCCAGTGGAGGGGTGGCAGACGAACGTCATCAAACATAATGTCTCCGAGGACACGGCCTGCTGCCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 72 bp CCCCGTCCTCCCAAGCGCCATCTGCAAGCTGCCATCTaGGCTCTTGCAGGCCCCAGAAGGATGTTAATATTC +
Preference number: 4 (lower is better)
Translates to: PRPPKRHLQAAI*ALAGPRRMLIF
Trigger: GAATATTAACATCCTTCTGGGGCCTGCAAGAGCCAAGATGGCAGCTTGCAGATGGCGCTTGGGAGGACGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 72 bp ACAACACCAAGCTACCCTAACACACAGCACAGGTCCTaGGAGGACTGCCAGTCAGAGTCCTGGGATGGCTGG +
Preference number: 4 (lower is better)
Translates to: TTPSYPNTQHRS*EDCQSESWDGW
Trigger: CCAGCCATCCCAGGACTCTGACTGGCAGTCCTCCAAGGACCTGTGCTGTGTGTTAGGGTAGCTTGGTGTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGCCAGGGGACAAATTTTCCAGGGCGGTTGCCCTTTCCTaGCTCACAGCAGGCCTTGCC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCKPGDKFSRAVALS*LTAGLA
Trigger: GGCAAGGCCTGCTGTGAGGCAGGAAAGGGCAACCGC...CCTGGAAAATTTGTCCCCTGGCTTACACACACACACACACACACACACACACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR GCA 90 bp TCCACATATAGTTTCTCAGTCACCTCTGTCCCCTCACTTCACAGTGTGGGGCATTGTTTGAGCTCCTCCTaGAGCAGGTCCGTCTGCCGG +
Preference number: 4 (lower is better)
Translates to: STYSFSVTSVPSLHSVGHCLSSS*SRSVCR
Trigger: CCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACA...ATGCCCCACACTGTGAAGTGAGGGGACAGAGGTGACTGAGAAACTATATGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR CAA 72 bp TCCGTGTGCAGCCAGTTCAAGATTTGGGTCTGGAGCTaGAACGCAGGAATGAGAGGGCAGCAGACGGGATAT +
Preference number: 4 (lower is better)
Translates to: SVCSQFKIWVWS*NAGMRGQQTGY
Trigger: ATATCCCGTCTGCTGCCCTCTCATTCCTGCGTTCAAGCTCCAGACCCAAATCTTGAACTGGCTGCACACGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 72 bp AAGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCT +
Preference number: 4 (lower is better)
Translates to: KDGCEPPCGCWD*NSGPSEEQSGA
Trigger: AGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR TCA 90 bp ACTAGCCGTTCTTCCTCTCTGGCTGAGGCCAATGTAACACAGGGAAGTGAGACGCTTTGTTCTCCTGTTTaGGCTCCTCCTGCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: TSRSSSLAEANVTQGSETLCSPV*APPAAG
Trigger: ACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAG...CGTCTCACTTCCCTGTGTTACATTGGCCTCAGCCAGAGAGGAAGAACGGCTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR CCA 90 bp CAGGAGAAGAGAGATCTTCTCATCTGCCCTTTCCTAACACACGCACACACACACAGTACTTCCCTGTCTTaGCCCCGCACATGTCCCGGA +
Preference number: 4 (lower is better)
Translates to: QEKRDLLICPFLTHAHTHSTSLS*PRTCPG
Trigger: TCCGGGACATGTGCGGGGCCAAGACAGGGAAGTACT...GTGTGTGTGTGCGTGTGTTAGGAAAGGGCAGATGAGAAGATCTCTCTTCTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 72 bp CACCTCTATCTAACACAGCCTGGCCTGCTCGGTCCCTaGTACACACACAGTTCTCTCCAAAGGATCAGAGCT +
Preference number: 4 (lower is better)
Translates to: HLYLTQPGLLGP*YTHSSLQRIRA
Trigger: AGCTCTGATCCTTTGGAGAGAACTGTGTGTGTACAAGGGACCGAGCAGGCCAGGCTGTGTTAGATAGAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR TCA 90 bp TCCACATATAGTTTCTCAGTCACCTCTGTCCCCTCACTTCACAGTGTGGGGCATCTTTGTTCTCCTGTTTaGGCTCCTCCTGCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: STYSFSVTSVPSLHSVGHLCSPV*APPAAG
Trigger: ACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAG...ATGCCCCACACTGTGAAGTGAGGGGACAGAGGTGACTGAGAAACTATATGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR GCA 90 bp TTTTCTTTGTCCCTAACTCTTCTAAGCCTTCAAGACCACATTTTGGTTCCCATTGACGAGGCACAGGGCTaGCAGGAGCTGCATCCAGGC +
Preference number: 4 (lower is better)
Translates to: FSLSLTLLSLQDHILVPIDEAQG*QELHPG
Trigger: GCCTGGATGCAGCTCCTGGCAGCCCTGTGCCTCGTC...AATGGGAACCAAAATGTGGTCTTGAAGGCTTAGAAGAGTTAGGGACAAAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
3UTR CAA 72 bp CAGAAAAGTATCAAAGACGCAAGACAGTCTCTGCCCTaGGCAGATGTCCAGGGTGTAGGAAGCATGAGAAGG +
Preference number: 4 (lower is better)
Translates to: QKSIKDARQSLP*ADVQGVGSMRR
Trigger: CCTTCTCATGCTTCCTACACCCTGGACATCTGCCAAGGGCAGAGACTGTCTTGCGTCTTTGATACTTTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR GCA 90 bp ACACACTGCTCAGTCACTTCTGAACTTTCCTTTTCCCTCTCCACATATAGTTTCCCTCACAGCAGGCCTTaGCCTCTGGTCCACACACTT +
Preference number: 4 (lower is better)
Translates to: THCSVTSELSFSLSTYSFPHSRP*PLVHTL
Trigger: AAGTGTGTGGACCAGAGGGCAAGGCCTGCTGTGAGG...GAAACTATATGTGGAGAGGGAAAAGGAAAGTTCAGAAGTGACTGAGCAGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR CCA 90 bp CACACTGCTCAGTCACTTCTGAACTTTCCTTTTCCCTCTCCACATATAGTTTCTCGCACATGTCCCGGATaGTCTCAGCATCCCAGCCAT +
Preference number: 4 (lower is better)
Translates to: HTAQSLLNFPFPSPHIVSRTCPG*SQHPSH
Trigger: ATGGCTGGGATGCTGAGACCATCCGGGACATGTGCG...AGAAACTATATGTGGAGAGGGAAAAGGAAAGTTCAGAAGTGACTGAGCAGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR CCA 90 bp ACACACTGCTCAGTCACTTCTGAACTTTCCTTTTCCCTCTCCACATATAGTTTCTCAGCCCAGGGCCTCTaGAAGAGTAGCCAGTGCTCT +
Preference number: 4 (lower is better)
Translates to: THCSVTSELSFSLSTYSFSAQGL*KSSQCS
Trigger: AGAGCACTGGCTACTCTTCCAGAGGCCCTGGGCTGA...GAAACTATATGTGGAGAGGGAAAAGGAAAGTTCAGAAGTGACTGAGCAGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR CAA 72 bp CAGAAGGATGTTAATATTCCCCACATCCTCAGGCCCTaGGAACAGCTTTCCTCCATAGCTCTGGTCCTTAGA +
Preference number: 4 (lower is better)
Translates to: QKDVNIPHILRP*EQLSSIALVLR
Trigger: TCTAAGGACCAGAGCTATGGAGGAAAGCTGTTCCAAGGGCCTGAGGATGTGGGGAATATTAACATCCTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR CCA 90 bp TTTTCTTTGTCCCTAACTCTTCTAAGCCTTCAAGACCACATTTTGGTTCCCATTGCTCATGGTAGAGCTTaGAGGCTTCCTGCGAGGGCA +
Preference number: 4 (lower is better)
Translates to: FSLSLTLLSLQDHILVPIAHGRA*RLPARA
Trigger: TGCCCTCGCAGGAAGCCTCCAAGCTCTACCATGAGC...AATGGGAACCAAAATGTGGTCTTGAAGGCTTAGAAGAGTTAGGGACAAAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR CCA 90 bp TTTTCTTTGTCCCTAACTCTTCTAAGCCTTCAAGACCACATTTTGGTTCCCATTCGCACATGTCCCGGATaGTCTCAGCATCCCAGCCAT +
Preference number: 4 (lower is better)
Translates to: FSLSLTLLSLQDHILVPIRTCPG*SQHPSH
Trigger: ATGGCTGGGATGCTGAGACCATCCGGGACATGTGCG...AATGGGAACCAAAATGTGGTCTTGAAGGCTTAGAAGAGTTAGGGACAAAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR GCA 90 bp GAACACACTGCTCAGTCACTTCTGAACTTTCCTTTTCCCTCTCCACATATAGTTCCTGTGTGTAATTTTTaGTTCACTCCTTTTATTGCA +
Preference number: 4 (lower is better)
Translates to: EHTAQSLLNFPFPSPHIVPVCNF*FTPFIA
Trigger: TGCAATAAAAGGAGTGAAGCAAAAATTACACACAGG...AACTATATGTGGAGAGGGAAAAGGAAAGTTCAGAAGTGACTGAGCAGTGTGTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
3UTR CAA 72 bp AAATTTTTATTTAAGCCATGCATCCCTTATTTCTGCTaGGCTTGGGACTTAATGAACACACTGCTCAGTCAC +
Preference number: 4 (lower is better)
Translates to: KFLFKPCIPYFC*AWDLMNTLLSH
Trigger: GTGACTGAGCAGTGTGTTCATTAAGTCCCAAGCCAAGCAGAAATAAGGGATGCATGGCTTAAATAAAAATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS CCA 90 bp ACGCCCAGCGCACTGAACAGTCCCCCAGGGAGTACTTCCCTGTCTTaGCCCCGCACATGTCCCGGATGGTCTCAGCATCCCAGCCATCAG +
Preference number: 5 (lower is better)
Translates to: TPSALNSPPGSTSLS*PRTCPGWSQHPSHQ
Trigger: CTGATGGCTGGGATGCTGAGACCATCCGGGACATGTGCGGGGCCAAGACAGGGAAGTACTCCCTGGGGGACTGTTCAGTGCGCTGGGCGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000162280.2
ENSMUST00000203665.2
CDS-3UTR CAA 90 bp CTGGGGATCCCCAGGGACCTCCAGCTAGTCTACACAGGAGAGAAGGAAACCGAGAAGAAGGCGGCCGCCTaGAAGGCGCTGGACGGGATG +
Preference number: 5 (lower is better)
Translates to: LGIPRDLQLVYTGEKETEKKAAA*KALDGM
Trigger: CATCCCGTCCAGCGCCTTCAAGGCGGCCGCCTTCTT...CTCGGTTTCCTTCTCTCCTGTGTAGACTAGCTGGAGGTCCCTGGGGATCCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS TCA 90 bp CGCGTTGAGGATGCCGATGATGGCCAGAATGTACGCCCAGCGCACTaGACAGTCCCCCAGGGAGTACTTCCCTGTCTTGGCCCCGCACAT +
Preference number: 5 (lower is better)
Translates to: RVEDADDGQNVRPAH*TVPQGVLPCLGPAH
Trigger: ATGTGCGGGGCCAAGACAGGGAAGTACTCCCTGGGGGACTGTTCAGTGCGCTGGGCGTACATTCTGGCCATCATCGGCATCCTCAACGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000162280.2
ENSMUST00000203665.2
CDS TCA 90 bp CAGGCCTTGCCCTCTGGTCCACACACTTGCCTTTGTTCTCCTGTTTaGGCTCCTCCTGCAGCAGGTCCGTCTGCCGGTTGCCCAGCACGA +
Preference number: 5 (lower is better)
Translates to: QALPSGPHTCLCSPV*APPAAGPSAGCPAR
Trigger: TCGTGCTGGGCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGGCAAGTGTGTGGACCAGAGGGCAAGGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS GCA 90 bp TTGCCTTTGTTCTCCTGTTTGAGCTCCTCCTGCAGCAGGTCCGTCTaGCGGTTGCCCAGCACGAAGGCAAGGAAGGACAGGATGAGCGCG +
Preference number: 5 (lower is better)
Translates to: LPLFSCLSSSCSRSV*RLPSTKARKDRMSA
Trigger: CGCGCTCATCCTGTCCTTCCTTGCCTTCGTGCTGGGCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS GCA 90 bp CTCTGGTCCACACACTTGCCTTTGTTCTCCTGTTTGAGCTCCTCCTaGAGCAGGTCCGTCTGCCGGTTGCCCAGCACGAAGGCAAGGAAG +
Preference number: 5 (lower is better)
Translates to: LWSTHLPLFSCLSSS*SRSVCRLPSTKARK
Trigger: CTTCCTTGCCTTCGTGCTGGGCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGGCAAGTGTGTGGACCAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS CCA 90 bp GCATCTGCGGTTGCCCTTTCCTGCCTCACAGCAGGCCTTGCCCTCTaGTCCACACACTTGCCTTTGTTCTCCTGTTTGAGCTCCTCCTGC +
Preference number: 5 (lower is better)
Translates to: ASAVALSCLTAGLAL*STHLPLFSCLSSSC
Trigger: GCAGGAGGAGCTCAAACAGGAGAACAAAGGCAAGTGTGTGGACCAGAGGGCAAGGCCTGCTGTGAGGCAGGAAAGGGCAACCGCAGATGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR CAA 90 bp GGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCGAGTACTTCCCTGTCTaGGCCCCGCACATGTCCCGG +
Preference number: 5 (lower is better)
Translates to: GCWDLNSGPSEEQSGALTEYFPV*APHMSR
Trigger: CCGGGACATGTGCGGGGCCAAGACAGGGAAGTACTC...GGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS GCA 90 bp AAATCTTTGTTCTCCTGTTTGAGCTCCTCCTGCAGCAGGTCCGTCTaGCGGTTGCCCAGCACGAAGGCAAGGAAGGACAGGATGAGCGCG +
Preference number: 5 (lower is better)
Translates to: KSLFSCLSSSCSRSV*RLPSTKARKDRMSA
Trigger: CGCGCTCATCCTGTCCTTCCTTGCCTTCGTGCTGGGCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGATTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS GCA 90 bp ACTGTAGTGCCCACGAAATCTTTGTTCTCCTGTTTGAGCTCCTCCTaGAGCAGGTCCGTCTGCCGGTTGCCCAGCACGAAGGCAAGGAAG +
Preference number: 5 (lower is better)
Translates to: TVVPTKSLFSCLSSS*SRSVCRLPSTKARK
Trigger: CTTCCTTGCCTTCGTGCTGGGCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGATTTCGTGGGCACTACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR CAA 90 bp CAGGAGAAGAGAGATCTTCTCATCTGCCCTTTCCTAACACACGCACACACACACGAGTACTTCCCTGTCTaGGCCCCGCACATGTCCCGG +
Preference number: 5 (lower is better)
Translates to: QEKRDLLICPFLTHAHTHEYFPV*APHMSR
Trigger: CCGGGACATGTGCGGGGCCAAGACAGGGAAGTACTC...GTGTGTGTGTGCGTGTGTTAGGAAAGGGCAGATGAGAAGATCTCTCTTCTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR CAA 90 bp CTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGCCAGGGGACAAATGCCTCACAGCAGGCCTaGCCCTCTGGTCCACACACT +
Preference number: 5 (lower is better)
Translates to: LSVCVCVCVCVCVSQGTNASQQA*PSGPHT
Trigger: AGTGTGTGGACCAGAGGGCAAGGCCTGCTGTGAGGC...ATTTGTCCCCTGGCTTACACACACACACACACACACACACACACACACAGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR CAA 90 bp CTCTCCAAGCACACACATGGCTGCCCTCCTCAATCCCTAGCGTTTCCTCTTCACATGAAGACCACCACGTaGATGATGGCGAAGCAGATG +
Preference number: 5 (lower is better)
Translates to: LSKHTHGCPPQSLAFPLHMKTTT*MMAKQM
Trigger: CATCTGCTTCGCCATCATCAACGTGGTGGTCTTCAT...GTGAAGAGGAAACGCTAGGGATTGAGGAGGGCAGCCATGTGTGTGCTTGGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR CAA 90 bp CCCCTCCATTTCCCACCTCCCAGGTTTCTTCATCTGCTGCCCATCCATGGAAAATCTTTGTTCTCCTGTTaGAGCTCCTCCTGCAGCAGG +
Preference number: 5 (lower is better)
Translates to: PLHFPPPRFLHLLPIHGKSLFSC*SSSCSR
Trigger: CCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGA...TTTTCCATGGATGGGCAGCAGATGAAGAAACCTGGGAGGTGGGAAATGGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR CAA 90 bp TCTCCACATATAGTTTCTCAGTCACCTCTGTCCCCTCACTTCACAGTGTGGGGCCCTTTGTTCTCCTGTTaGAGCTCCTCCTGCAGCAGG +
Preference number: 5 (lower is better)
Translates to: SPHIVSQSPLSPHFTVWGPLFSC*SSSCSR
Trigger: CCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGG...GCCCCACACTGTGAAGTGAGGGGACAGAGGTGACTGAGAAACTATATGTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR CAA 90 bp GGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCTCCACACACTTGCCTTaGTTCTCCTGTTTGAGCTCC +
Preference number: 5 (lower is better)
Translates to: GCWDLNSGPSEEQSGALTSTHLP*FSCLSS
Trigger: GGAGCTCAAACAGGAGAACAAAGGCAAGTGTGTGGA...GGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS-3UTR CAA 90 bp TATAACTGCTTTCTCCTCTCCCCTCTCTGTCAAGAGCAAAGAAATCCGCTAACAGACAGGATGAGCGCGTaGAGGATGCCGATGATGGCC +
Preference number: 5 (lower is better)
Translates to: YNCFLLSPLCQEQRNPLTDRMSA*RMPMMA
Trigger: GGCCATCATCGGCATCCTCAACGCGCTCATCCTGTC...TGTTAGCGGATTTCTTTGCTCTTGACAGAGAGGGGAGAGGAGAAAGCAGTTATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGCCAGGGGACAAATTTTCCAGGTTATTGCATCTGCGGTaGCCCTTTCCTGCCTCACAG +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCKPGDKFSRLLHLR*PFPASQ
Trigger: CTGTGAGGCAGGAAAGGGCAACCGCAGATGCAATAA...CCTGGAAAATTTGTCCCCTGGCTTACACACACACACACACACACACACACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS GCA 90 bp AGAGTAGCCAGTGCTCTGAATCGCCAGCTCCCTGTGTGTAATTTTTaGTTCACTCCTTTTATTGCATCTGCGGTTGCCCTTTCCTGCCTC +
Preference number: 5 (lower is better)
Translates to: RVASALNRQLPVCNF*FTPFIASAVALSCL
Trigger: GAGGCAGGAAAGGGCAACCGCAGATGCAATAAAAGGAGTGAAGCAAAAATTACACACAGGGAGCTGGCGATTCAGAGCACTGGCTACTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS CAA 90 bp TACGCCCAGCGCACTGAACAGTCCCCCAGGGAGTACTTCCCTGTCTaGGCCCCGCACATGTCCCGGATGGTCTCAGCATCCCAGCCATCA +
Preference number: 6 (lower is better)
Translates to: YAQRTEQSPREYFPV*APHMSRMVSASQPS
Trigger: TGATGGCTGGGATGCTGAGACCATCCGGGACATGTGCGGGGCCAAGACAGGGAAGTACTCCCTGGGGGACTGTTCAGTGCGCTGGGCGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000162280.2
ENSMUST00000203665.2
CDS CAA 90 bp GCAGGCCTTGCCCTCTGGTCCACACACTTGCCTTTGTTCTCCTGTTaGAGCTCCTCCTGCAGCAGGTCCGTCTGCCGGTTGCCCAGCACG +
Preference number: 6 (lower is better)
Translates to: AGLALWSTHLPLFSC*SSSCSRSVCRLPST
Trigger: CGTGCTGGGCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGGCAAGTGTGTGGACCAGAGGGCAAGGCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS CCA 72 bp GCACTGAACAGTCCCCCAGGGAGTACTTCCCTGTCTTaGCCCCGCACATGTCCCGGATGGTCTCAGCATCCC +
Preference number: 6 (lower is better)
Translates to: ALNSPPGSTSLS*PRTCPGWSQHP
Trigger: GGGATGCTGAGACCATCCGGGACATGTGCGGGGCCAAGACAGGGAAGTACTCCCTGGGGGACTGTTCAGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000162280.2
ENSMUST00000203665.2
CDS GCA 72 bp TTCTCCTGTTTGAGCTCCTCCTGCAGCAGGTCCGTCTaGCGGTTGCCCAGCACGAAGGCAAGGAAGGACAGG +
Preference number: 6 (lower is better)
Translates to: FSCLSSSCSRSV*RLPSTKARKDR
Trigger: CCTGTCCTTCCTTGCCTTCGTGCTGGGCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162280.2
ENSMUST00000203665.2
CDS CAA 72 bp AGCACCATGGAAAGCAACACGAAGAAGGCGGCCGCCTaGAAGGCGCTGGACGGGATGGTGCTGAAGTCGGTG +
Preference number: 6 (lower is better)
Translates to: STMESNTKKAAA*KALDGMVLKSV
Trigger: CACCGACTTCAGCACCATCCCGTCCAGCGCCTTCAAGGCGGCCGCCTTCTTCGTGTTGCTTTCCATGGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS CAA 90 bp CCGAGAATCAGCACCATGGAAAGCAACACGAAGAAGGCGGCCGCCTaGAAGGCGCTGGACGGGATGGTGCTGAAGTCGGTGAAAGAGCCC +
Preference number: 6 (lower is better)
Translates to: PRISTMESNTKKAAA*KALDGMVLKSVKEP
Trigger: GGGCTCTTTCACCGACTTCAGCACCATCCCGTCCAGCGCCTTCAAGGCGGCCGCCTTCTTCGTGTTGCTTTCCATGGTGCTGATTCTCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS CAA 90 bp TGCCGGTTGCCCAGCACGAAGGCAAGGAAGGACAGGATGAGCGCGTaGAGGATGCCGATGATGGCCAGAATGTACGCCCAGCGCACTGAA +
Preference number: 6 (lower is better)
Translates to: CRLPSTKARKDRMSA*RMPMMARMYAQRTE
Trigger: TTCAGTGCGCTGGGCGTACATTCTGGCCATCATCGGCATCCTCAACGCGCTCATCCTGTCCTTCCTTGCCTTCGTGCTGGGCAACCGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162280.2
ENSMUST00000203665.2
CDS TCA 72 bp GATGCCGATGATGGCCAGAATGTACGCCCAGCGCACTaGACAGTCCCCCAGGGAGTACTTCCCTGTCTTGGC +
Preference number: 6 (lower is better)
Translates to: DADDGQNVRPAH*TVPQGVLPCLG
Trigger: GCCAAGACAGGGAAGTACTCCCTGGGGGACTGTTCAGTGCGCTGGGCGTACATTCTGGCCATCATCGGCATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000162280.2
ENSMUST00000203665.2
CDS TCA 72 bp CCCTCTGGTCCACACACTTGCCTTTGTTCTCCTGTTTaGGCTCCTCCTGCAGCAGGTCCGTCTGCCGGTTGC +
Preference number: 6 (lower is better)
Translates to: PSGPHTCLCSPV*APPAAGPSAGC
Trigger: GCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGGCAAGTGTGTGGACCAGAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS CAA 72 bp CCCAGCACGAAGGCAAGGAAGGACAGGATGAGCGCGTaGAGGATGCCGATGATGGCCAGAATGTACGCCCAG +
Preference number: 6 (lower is better)
Translates to: PSTKARKDRMSA*RMPMMARMYAQ
Trigger: CTGGGCGTACATTCTGGCCATCATCGGCATCCTCAACGCGCTCATCCTGTCCTTCCTTGCCTTCGTGCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000162280.2
ENSMUST00000203665.2
CDS CAA 72 bp GCCCTCTGGTCCACACACTTGCCTTTGTTCTCCTGTTaGAGCTCCTCCTGCAGCAGGTCCGTCTGCCGGTTG +
Preference number: 6 (lower is better)
Translates to: ALWSTHLPLFSC*SSSCSRSVCRL
Trigger: CAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGGCAAGTGTGTGGACCAGAGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS CAA 90 bp CCTCCTGGCCGCAGCACGGAACTTACTGTAGTGCCCACGAAATCTTaGTTCTCCTGTTTGAGCTCCTCCTGCAGCAGGTCCGTCTGCCGG +
Preference number: 6 (lower is better)
Translates to: PPGRSTELTVVPTKS*FSCLSSSCSRSVCR
Trigger: CCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGATTTCGTGGGCACTACAGTAAGTTCCGTGCTGCGGCCAGGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS GCA 72 bp CCCACGAAATCTTTGTTCTCCTGTTTGAGCTCCTCCTaGAGCAGGTCCGTCTGCCGGTTGCCCAGCACGAAG +
Preference number: 6 (lower is better)
Translates to: PTKSLFSCLSSS*SRSVCRLPSTK
Trigger: CTTCGTGCTGGGCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGATTTCGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS GCA 72 bp ACACACTTGCCTTTGTTCTCCTGTTTGAGCTCCTCCTaGAGCAGGTCCGTCTGCCGGTTGCCCAGCACGAAG +
Preference number: 6 (lower is better)
Translates to: THLPLFSCLSSS*SRSVCRLPSTK
Trigger: CTTCGTGCTGGGCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGGCAAGTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS GCA 72 bp ATCTGCGGTTGCCCTTTCCTGCCTCACAGCAGGCCTTaGCCTCTGGTCCACACACTTGCCTTTGTTCTCCTG +
Preference number: 6 (lower is better)
Translates to: ICGCPFLPHSRP*PLVHTLAFVLL
Trigger: CAGGAGAACAAAGGCAAGTGTGTGGACCAGAGGGCAAGGCCTGCTGTGAGGCAGGAAAGGGCAACCGCAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS CAA 72 bp ACAGCAGGCCTTGCCCTCTGGTCCACACACTTGCCTTaGTTCTCCTGTTTGAGCTCCTCCTGCAGCAGGTCC +
Preference number: 6 (lower is better)
Translates to: TAGLALWSTHLP*FSCLSSSCSRS
Trigger: GGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGGCAAGTGTGTGGACCAGAGGGCAAGGCCTGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS CAA 72 bp CATCTGCGGTTGCCCTTTCCTGCCTCACAGCAGGCCTaGCCCTCTGGTCCACACACTTGCCTTTGTTCTCCT +
Preference number: 6 (lower is better)
Translates to: HLRLPFPASQQA*PSGPHTCLCSP
Trigger: AGGAGAACAAAGGCAAGTGTGTGGACCAGAGGGCAAGGCCTGCTGTGAGGCAGGAAAGGGCAACCGCAGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS CAA 90 bp AGCACGGAACTTACTGTAGTGCCCACGAAATCTTTGTTCTCCTGTTaGAGCTCCTCCTGCAGCAGGTCCGTCTGCCGGTTGCCCAGCACG +
Preference number: 6 (lower is better)
Translates to: STELTVVPTKSLFSC*SSSCSRSVCRLPST
Trigger: CGTGCTGGGCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGATTTCGTGGGCACTACAGTAAGTTCCGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS CCA 72 bp GTTGCCCTTTCCTGCCTCACAGCAGGCCTTGCCCTCTaGTCCACACACTTGCCTTTGTTCTCCTGTTTGAGC +
Preference number: 6 (lower is better)
Translates to: VALSCLTAGLAL*STHLPLFSCLS
Trigger: GCTCAAACAGGAGAACAAAGGCAAGTGTGTGGACCAGAGGGCAAGGCCTGCTGTGAGGCAGGAAAGGGCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS GCA 72 bp TTCACTCCTTTTATTGCATCTGCGGTTGCCCTTTCCTaGCTCACAGCAGGCCTTGCCCTCTGGTCCACACAC +
Preference number: 6 (lower is better)
Translates to: FTPFIASAVALS*LTAGLALWSTH
Trigger: GTGTGTGGACCAGAGGGCAAGGCCTGCTGTGAGGCAGGAAAGGGCAACCGCAGATGCAATAAAAGGAGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS CCA 72 bp AGTACTTCCCTGTCTTGGCCCCGCACATGTCCCGGATaGTCTCAGCATCCCAGCCATCAGGAAAGATCATAC +
Preference number: 6 (lower is better)
Translates to: STSLSWPRTCPG*SQHPSHQERSY
Trigger: GTATGATCTTTCCTGATGGCTGGGATGCTGAGACCATCCGGGACATGTGCGGGGCCAAGACAGGGAAGTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000162280.2
ENSMUST00000203665.2
CDS CAA 72 bp CTTACTGTAGTGCCCACGAAATCTTTGTTCTCCTGTTaGAGCTCCTCCTGCAGCAGGTCCGTCTGCCGGTTG +
Preference number: 6 (lower is better)
Translates to: LTVVPTKSLFSC*SSSCSRSVCRL
Trigger: CAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAACAGGAGAACAAAGATTTCGTGGGCACTACAGTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162280.2
CDS CAA 72 bp AGCTCCCTGTGTGTAATTTTTGCTTCACTCCTTTTATaGCATCTGCGGTTGCCCTTTCCTGCCTCACAGCAG +
Preference number: 6 (lower is better)
Translates to: SSLCVIFASLLL*HLRLPFPASQQ
Trigger: CTGCTGTGAGGCAGGAAAGGGCAACCGCAGATGCAATAAAAGGAGTGAAGCAAAAATTACACACAGGGAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2
CDS GCA 72 bp AGTGCTCTGAATCGCCAGCTCCCTGTGTGTAATTTTTaGTTCACTCCTTTTATTGCATCTGCGGTTGCCCTT +
Preference number: 6 (lower is better)
Translates to: SALNRQLPVCNF*FTPFIASAVAL
Trigger: AAGGGCAACCGCAGATGCAATAAAAGGAGTGAAGCAAAAATTACACACAGGGAGCTGGCGATTCAGAGCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000203665.2