Pregenerated sensors for LHFPL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000106379Ensembl transcript IDs: ENSMUST00000196406.2, ENSMUST00000197992.2
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGAGGGCAACCTGATTCTTGTGTTGTCCTCCAGCTGATGCTCGAGTaGGATGCTGATTTAACCCAATCCCAAGCCTGGGAGTGCAGGCAT | + |
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Preference number: 1 (lower is better) Translates to: RGQPDSCVVLQLMLE*DADLTQSQAWECRH Trigger: ATGCCTGCACTCCCAGGCTTGGGATTGGGTTAAATCAGCATCCCACTCGAGCATCAGCTGGAGGACAACACAAGAATCAGGTTGCCCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR CCA 90 bp | CATTTGCTTCGTGACAACATGGCTAAAAATATGAGCACGGTCTTATaGGAGCATAAGAGAGGGCAACCTGATTCTTGTGTTGTCCTCCAG | + |
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Preference number: 1 (lower is better) Translates to: HLLRDNMAKNMSTVL*EHKRGQPDSCVVLQ Trigger: CTGGAGGACAACACAAGAATCAGGTTGCCCTCTCTTATGCTCCCATAAGACCGTGCTCATATTTTTAGCCATGTTGTCACGAAGCAAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR CCA 90 bp | AGAGGCATTCCTCAAAACATGACACTCCATGGGCCTCTTGGCTACTaGGATGGGAATAGTCTAGAACTAACTGCCCTTTTACTTCATTTA | + |
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Preference number: 1 (lower is better) Translates to: RGIPQNMTLHGPLGY*DGNSLELTALLLHL Trigger: TAAATGAAGTAAAAGGGCAGTTAGTTCTAGACTATTCCCATCCCAGTAGCCAAGAGGCCCATGGAGTGTCATGTTTTGAGGAATGCCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR TCA 90 bp | AAGTCTCTTAATAACCACGTGGTTGTAACTAATTGCACAGTGACATaGGTGGACAGTAGCAATGAGGGATCAAGGATCAGAGGCATTCCT | + |
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Preference number: 1 (lower is better) Translates to: KSLNNHVVVTNCTVT*VDSSNEGSRIRGIP Trigger: AGGAATGCCTCTGATCCTTGATCCCTCATTGCTACTGTCCACTCATGTCACTGTGCAATTAGTTACAACCACGTGGTTATTAAGAGACTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR TCA 90 bp | TTAGCCATTGGAAACATTTGCTTCGTGACAACATGGCTAAAAATATaGGCACGGTCTTATGGGAGCATAAGAGAGGGCAACCTGATTCTT | + |
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Preference number: 1 (lower is better) Translates to: LAIGNICFVTTWLKI*ARSYGSIREGNLIL Trigger: AAGAATCAGGTTGCCCTCTCTTATGCTCCCATAAGACCGTGCTCATATTTTTAGCCATGTTGTCACGAAGCAAATGTTTCCAATGGCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR TCA 90 bp | GTGGTTTACATGTGTGTTACGTATGTACAGATGGTTTATCATCAATaGTCCATCTTCATAGCACTGCGGTGTGCTAAATTACACTTAGGG | + |
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Preference number: 1 (lower is better) Translates to: VVYMCVTYVQMVYHQ*SIFIALRCAKLHLG Trigger: CCCTAAGTGTAATTTAGCACACCGCAGTGCTATGAAGATGGATCATTGATGATAAACCATCTGTACATACGTAACACACATGTAAACCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR GCA 90 bp | CTCCAGCTGATGCTCGAGTGGGATGCTGATTTAACCCAATCCCAAGCCTGGGAGCAGGGGAATCTATGTTaGTTGGGAACCTACGATGTC | + |
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Preference number: 2 (lower is better) Translates to: LQLMLEWDADLTQSQAWEQGNLC*LGTYDV Trigger: GACATCGTAGGTTCCCAAGCAACATAGATTCCCCTG...CTCCCAGGCTTGGGATTGGGTTAAATCAGCATCCCACTCGAGCATCAGCTGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGGACATGTTATAAGGGCAACGGCTGGGGGACCCTGGAAGGAAAAGATTCTTTATAAGGGCAACGGCTaGGGGACCCTGGAAGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: AGHVIRATAGGPWKEKILYKGNG*GTLEGK Trigger: TTTTCCTTCCAGGGTCCCCCAGCCGTTGCCCTTATA...AAGAATCTTTTCCTTCCAGGGTCCCCCAGCCGTTGCCCTTATAACATGTCCTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGGACATGTTATAAGGGCAACGGCTGGGGGACCCTGGAAGGAAAAGATTCTTGGAATCTATGTTGCTTaGGAACCTACGATGTCTGGA | + |
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Preference number: 2 (lower is better) Translates to: AGHVIRATAGGPWKEKILGIYVA*EPTMSG Trigger: TCCAGACATCGTAGGTTCCCAAGCAACATAGATTCC...AAGAATCTTTTCCTTCCAGGGTCCCCCAGCCGTTGCCCTTATAACATGTCCTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGGACATGTTATAAGGGCAACGGCTGGGGGACCCTGGAAGGAAAAGATTCTTTTGTTCAGAGCTCCTTaGTGCTGTTTTGTCAATGAC | + |
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Preference number: 2 (lower is better) Translates to: AGHVIRATAGGPWKEKILLFRAP*CCFVND Trigger: GTCATTGACAAAACAGCATCAAGGAGCTCTGAACAA...AAGAATCTTTTCCTTCCAGGGTCCCCCAGCCGTTGCCCTTATAACATGTCCTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR TCA 90 bp | GCACGGTCTTATGGGAGCATAAGAGAGGGCAACCTGATTCTTGTGTTGTCCTCCTTGTTCAGAGCTCCTTaGTGCTGTTTTGTCAATGAC | + |
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Preference number: 2 (lower is better) Translates to: ARSYGSIREGNLILVLSSLFRAP*CCFVND Trigger: GTCATTGACAAAACAGCATCAAGGAGCTCTGAACAA...GGAGGACAACACAAGAATCAGGTTGCCCTCTCTTATGCTCCCATAAGACCGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR TCA 90 bp | CTCCAGCTGATGCTCGAGTGGGATGCTGATTTAACCCAATCCCAAGCCTGGGAGAGCCTATATATTACATaGGAGAGCATCCAAGTGAAA | + |
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Preference number: 2 (lower is better) Translates to: LQLMLEWDADLTQSQAWESLYIT*ESIQVK Trigger: TTTCACTTGGATGCTCTCTCATGTAATATATAGGCT...CTCCCAGGCTTGGGATTGGGTTAAATCAGCATCCCACTCGAGCATCAGCTGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CCA 90 bp | ATCAAGGATCAGAGGCATTCCTCAAAACATGACACTCCATGGGCCTCTTGGCTAGTGTGTAGTCATCTCTaGACTCTGATCTCTCCCAAG | + |
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Preference number: 2 (lower is better) Translates to: IKDQRHSSKHDTPWASWLVCSHL*TLISPK Trigger: CTTGGGAGAGATCAGAGTCCAGAGATGACTACACAC...TAGCCAAGAGGCCCATGGAGTGTCATGTTTTGAGGAATGCCTCTGATCCTTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CCA 90 bp | GACAGTAGCAATGAGGGATCAAGGATCAGAGGCATTCCTCAAAACATGACACTCGTGTGTAGTCATCTCTaGACTCTGATCTCTCCCAAG | + |
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Preference number: 2 (lower is better) Translates to: DSSNEGSRIRGIPQNMTLVCSHL*TLISPK Trigger: CTTGGGAGAGATCAGAGTCCAGAGATGACTACACAC...GAGTGTCATGTTTTGAGGAATGCCTCTGATCCTTGATCCCTCATTGCTACTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR CAA 90 bp | TCAGAGCTCCTTGATGCTGTTTTGTCAATGACAGGGGAATCTATGTaGCTTGGGAACCTACGATGTCTGGATGTACTTCCTGTGATTCAC | + |
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Preference number: 2 (lower is better) Translates to: SELLDAVLSMTGESM*LGNLRCLDVLPVIH Trigger: GTGAATCACAGGAAGTACATCCAGACATCGTAGGTTCCCAAGCAACATAGATTCCCCTGTCATTGACAAAACAGCATCAAGGAGCTCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CCA 90 bp | ACGATGTCTGGATGTACTTCCTGTGATTCACAGTTTGATGGAGTCATAGCACATGGGCCTCTTGGCTACTaGGATGGGAATAGTCTAGAA | + |
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Preference number: 2 (lower is better) Translates to: TMSGCTSCDSQFDGVIAHGPLGY*DGNSLE Trigger: TTCTAGACTATTCCCATCCCAGTAGCCAAGAGGCCC...ATGTGCTATGACTCCATCAAACTGTGAATCACAGGAAGTACATCCAGACATCGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CCA 90 bp | AAAAATATGAGCACGGTCTTATGGGAGCATAAGAGAGGGCAACCTGATTCTTGTACGGCTGGGGGACCCTaGAAGGAAAAGATTCTTGAA | + |
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Preference number: 2 (lower is better) Translates to: KNMSTVLWEHKRGQPDSCTAGGP*KEKILE Trigger: TTCAAGAATCTTTTCCTTCCAGGGTCCCCCAGCCGT...ACAAGAATCAGGTTGCCCTCTCTTATGCTCCCATAAGACCGTGCTCATATTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR GCA 90 bp | AAAAATATGAGCACGGTCTTATGGGAGCATAAGAGAGGGCAACCTGATTCTTGTCAGGGGAATCTATGTTaGTTGGGAACCTACGATGTC | + |
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Preference number: 2 (lower is better) Translates to: KNMSTVLWEHKRGQPDSCQGNLC*LGTYDV Trigger: GACATCGTAGGTTCCCAAGCAACATAGATTCCCCTG...ACAAGAATCAGGTTGCCCTCTCTTATGCTCCCATAAGACCGTGCTCATATTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CCA 90 bp | GCACGGTCTTATGGGAGCATAAGAGAGGGCAACCTGATTCTTGTGTTGTCCTCCCAGTTTCCAATGAGCTaGTGTTTAATCTGTAATCAT | + |
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Preference number: 2 (lower is better) Translates to: ARSYGSIREGNLILVLSSQFPMS*CLICNH Trigger: ATGATTACAGATTAAACACCAGCTCATTGGAAACTG...GGAGGACAACACAAGAATCAGGTTGCCCTCTCTTATGCTCCCATAAGACCGTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CCA 90 bp | TGCTGTTTTGTCAATGACAGGGGAATCTATGTTGCTTGGGAACCTACGATGTCTTGGAGTCATAGCACATaGCAGAAACATTTCCTTCGT | + |
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Preference number: 2 (lower is better) Translates to: CCFVNDRGIYVAWEPTMSWSHST*QKHFLR Trigger: ACGAAGGAAATGTTTCTGCCATGTGCTATGACTCCA...AGACATCGTAGGTTCCCAAGCAACATAGATTCCCCTGTCATTGACAAAACAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR TCA 90 bp | CAGAAACATTTCCTTCGTGATAAGTCGTACAAACAGATTAAACTGAACACACATGCATTCCTCAAAACATaGCACTCCATGGGCCTCTTG | + |
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Preference number: 2 (lower is better) Translates to: QKHFLRDKSYKQIKLNTHAFLKT*HSMGLL Trigger: CAAGAGGCCCATGGAGTGTCATGTTTTGAGGAATGC...ATGTGTGTTCAGTTTAATCTGTTTGTACGACTTATCACGAAGGAAATGTTTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CCA 90 bp | GACAGTAGCAATGAGGGATCAAGGATCAGAGGCATTCCTCAAAACATGACACTCCAGTTTCCAATGAGCTaGTGTTTAATCTGTAATCAT | + |
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Preference number: 2 (lower is better) Translates to: DSSNEGSRIRGIPQNMTLQFPMS*CLICNH Trigger: ATGATTACAGATTAAACACCAGCTCATTGGAAACTG...GAGTGTCATGTTTTGAGGAATGCCTCTGATCCTTGATCCCTCATTGCTACTGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAACCTAATACCTTCTGATTTTAGTATAGATATAGAGATGCCTCCCCTTAAAACGGCTGGGGGACCCTaGAAGGAAAAGATTCTTGAA | + |
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Preference number: 2 (lower is better) Translates to: RNLIPSDFSIDIEMPPLKTAGGP*KEKILE Trigger: TTCAAGAATCTTTTCCTTCCAGGGTCCCCCAGCCGT...TTTAAGGGGAGGCATCTCTATATCTATACTAAAATCAGAAGGTATTAGGTTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR TCA 90 bp | GCATTGAGCCCCCTTTATATGTACTTCAACTTGCGTTTATACTCAGACAATGAACTTCCTTCTTGGTGCTaGTGTACAAAGCTGTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: ALSPLYMYFNLRLYSDNELPSWC*CTKLFV Trigger: AACAAACAGCTTTGTACATCAGCACCAAGAAGGAAG...TTCATTGTCTGAGTATAAACGCAAGTTGAAGTACATATAAAGGGGGCTCAATGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR TCA 90 bp | GTCATAGCACATGGCAGAAACATTTCCTTCGTGATAAGTCGTACAAACAGATTACTTCCTTCTTGGTGCTaGTGTACAAAGCTGTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: VIAHGRNISFVISRTNRLLPSWC*CTKLFV Trigger: AACAAACAGCTTTGTACATCAGCACCAAGAAGGAAG...TAATCTGTTTGTACGACTTATCACGAAGGAAATGTTTCTGCCATGTGCTATGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR TCA 90 bp | AAAAATATGAGCACGGTCTTATGGGAGCATAAGAGAGGGCAACCTGATTCTTGTAATCAGAAGGTGCTTTaGAGAGTAGATGTTTCACTT | + |
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Preference number: 2 (lower is better) Translates to: KNMSTVLWEHKRGQPDSCNQKVL*RVDVSL Trigger: AAGTGAAACATCTACTCTTCAAAGCACCTTCTGATT...ACAAGAATCAGGTTGCCCTCTCTTATGCTCCCATAAGACCGTGCTCATATTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR GCA 90 bp | AGGAACCTAATACCTTCTGATTTTAGTATAGATATAGAGATGCCTCCCCTTAAATCCCAAGCCTGGGAGTaGAGGCATTCTATTTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: RNLIPSDFSIDIEMPPLKSQAWE*RHSICV Trigger: AACACAAATAGAATGCCTGCACTCCCAGGCTTGGGA...TTTAAGGGGAGGCATCTCTATATCTATACTAAAATCAGAAGGTATTAGGTTCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR CAA 90 bp | AGAAAAATTACTCGAGTCTCTGCAGATCTAGAATCAGAAGGTGCTTaGAAGAGTAGATGTTTCACTTTTGTGTGTAGTCATCTCTGGACT | + |
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Preference number: 2 (lower is better) Translates to: RKITRVSADLESEGA*KSRCFTFVCSHLWT Trigger: AGTCCAGAGATGACTACACACAAAAGTGAAACATCTACTCTTCAAAGCACCTTCTGATTCTAGATCTGCAGAGACTCGAGTAATTTTTCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR CAA 90 bp | GTGAAAATAAACTTTCTATATTGTTCAGAGCTCCTTGATGCTGTTTaGTCAATGACAGGGGAATCTATGTTGCTTGGGAACCTACGATGT | + |
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Preference number: 2 (lower is better) Translates to: VKINFLYCSELLDAV*SMTGESMLLGNLRC Trigger: ACATCGTAGGTTCCCAAGCAACATAGATTCCCCTGTCATTGACAAAACAGCATCAAGGAGCTCTGAACAATATAGAAAGTTTATTTTCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CCA 90 bp | CATAGCTCCTCTCAGAAAAATTACTCGAGTCTCTGCAGATCTAGAATCAGAAGGCATTCTAGAGAATATTaGCTTAACAGAAATGGTGAG | + |
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Preference number: 2 (lower is better) Translates to: HSSSQKNYSSLCRSRIRRHSREY*LNRNGE Trigger: CTCACCATTTCTGTTAAGCCAATATTCTCTAGAATG...CCTTCTGATTCTAGATCTGCAGAGACTCGAGTAATTTTTCTGAGAGGAGCTATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197992.2 |
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| 3UTR-3UTR TCA 90 bp | AGGAACCTAATACCTTCTGATTTTAGTATAGATATAGAGATGCCTCCCCTTAAAAATCAGAAGGTGCTTTaGAGAGTAGATGTTTCACTT | + |
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Preference number: 2 (lower is better) Translates to: RNLIPSDFSIDIEMPPLKNQKVL*RVDVSL Trigger: AAGTGAAACATCTACTCTTCAAAGCACCTTCTGATT...TTTAAGGGGAGGCATCTCTATATCTATACTAAAATCAGAAGGTATTAGGTTCCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CAA 90 bp | CTCCAGCTGATGCTCGAGTGGGATGCTGATTTAACCCAATCCCAAGCCTGGGAGGGGAATCTATGTTGCTaGGGAACCTACGATGTCTGG | + |
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Preference number: 3 (lower is better) Translates to: LQLMLEWDADLTQSQAWEGNLCC*GTYDVW Trigger: CCAGACATCGTAGGTTCCCAAGCAACATAGATTCCC...CTCCCAGGCTTGGGATTGGGTTAAATCAGCATCCCACTCGAGCATCAGCTGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR CCA 72 bp | CCTGATTCTTGTGTTGTCCTCCAGCTGATGCTCGAGTaGGATGCTGATTTAACCCAATCCCAAGCCTGGGAG | + |
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Preference number: 3 (lower is better) Translates to: PDSCVVLQLMLE*DADLTQSQAWE Trigger: CTCCCAGGCTTGGGATTGGGTTAAATCAGCATCCCACTCGAGCATCAGCTGGAGGACAACACAAGAATCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CAA 90 bp | CTCCAGCTGATGCTCGAGTGGGATGCTGATTTAACCCAATCCCAAGCCTGGGAGACAGGGGAATCTATGTaGCTTGGGAACCTACGATGT | + |
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Preference number: 3 (lower is better) Translates to: LQLMLEWDADLTQSQAWETGESM*LGNLRC Trigger: ACATCGTAGGTTCCCAAGCAACATAGATTCCCCTGT...CTCCCAGGCTTGGGATTGGGTTAAATCAGCATCCCACTCGAGCATCAGCTGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR TCA 72 bp | ATGAGGGATCAAGGATCAGAGGCATTCCTCAAAACATaGCACTCCATGGGCCTCTTGGCTACTGGGATGGGA | + |
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Preference number: 3 (lower is better) Translates to: MRDQGSEAFLKT*HSMGLLATGMG Trigger: TCCCATCCCAGTAGCCAAGAGGCCCATGGAGTGTCATGTTTTGAGGAATGCCTCTGATCCTTGATCCCTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CAA 90 bp | GCTTGCATTGAGCCCCCTTTATATGTACTTCAACTTGCGTTTATACTCAGACAACACTCCATGGGCCTCTaGGCTACTGGGATGGGAATA | + |
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Preference number: 3 (lower is better) Translates to: ACIEPPLYVLQLAFILRQHSMGL*ATGMGI Trigger: TATTCCCATCCCAGTAGCCAAGAGGCCCATGGAGTG...TTGTCTGAGTATAAACGCAAGTTGAAGTACATATAAAGGGGGCTCAATGCAAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR TCA 72 bp | GATGTTTCACTTTTGTGTGTAGTCATCTCTGGACTCTaGTCTCTCCCAAGCGTCTTCCTTCTTGGTGCTGAT | + |
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Preference number: 3 (lower is better) Translates to: DVSLLCVVISGL*SLPSVFLLGAD Trigger: ATCAGCACCAAGAAGGAAGACGCTTGGGAGAGATCAGAGTCCAGAGATGACTACACACAAAAGTGAAACATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR TCA 72 bp | GGCAACGGCTGGGGGACCCTGGAAGGAAAAGATTCTTaGAGACAGCTAGTTAGTTGTAACTACTTTCAAGTA | + |
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Preference number: 3 (lower is better) Translates to: GNGWGTLEGKDS*RQLVSCNYFQV Trigger: TACTTGAAAGTAGTTACAACTAACTAGCTGTCTTCAAGAATCTTTTCCTTCCAGGGTCCCCCAGCCGTTGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR CCA 72 bp | TGCTGTTTTGTCAATGACAGGGGAATCTATGTTGCTTaGGAACCTACGATGTCTGGATGTACTTCCTGTGAT | + |
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Preference number: 3 (lower is better) Translates to: CCFVNDRGIYVA*EPTMSGCTSCD Trigger: ATCACAGGAAGTACATCCAGACATCGTAGGTTCCCAAGCAACATAGATTCCCCTGTCATTGACAAAACAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR CCA 72 bp | CGTGACAACATGGCTAAAAATATGAGCACGGTCTTATaGGAGCATAAGAGAGGGCAACCTGATTCTTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: RDNMAKNMSTVL*EHKRGQPDSCV Trigger: AACACAAGAATCAGGTTGCCCTCTCTTATGCTCCCATAAGACCGTGCTCATATTTTTAGCCATGTTGTCACG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CAA 90 bp | CAGAAACATTTCCTTCGTGATAAGTCGTACAAACAGATTAAACTGAACACACATCACTCCATGGGCCTCTaGGCTACTGGGATGGGAATA | + |
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Preference number: 3 (lower is better) Translates to: QKHFLRDKSYKQIKLNTHHSMGL*ATGMGI Trigger: TATTCCCATCCCAGTAGCCAAGAGGCCCATGGAGTG...ATGTGTGTTCAGTTTAATCTGTTTGTACGACTTATCACGAAGGAAATGTTTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CAA 90 bp | GCTTGCATTGAGCCCCCTTTATATGTACTTCAACTTGCGTTTATACTCAGACAAACAGGGGAATCTATGTaGCTTGGGAACCTACGATGT | + |
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Preference number: 3 (lower is better) Translates to: ACIEPPLYVLQLAFILRQTGESM*LGNLRC Trigger: ACATCGTAGGTTCCCAAGCAACATAGATTCCCCTGT...TTGTCTGAGTATAAACGCAAGTTGAAGTACATATAAAGGGGGCTCAATGCAAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR TCA 72 bp | AATAACCACGTGGTTGTAACTAATTGCACAGTGACATaGGTGGACAGTAGCAATGAGGGATCAAGGATCAGA | + |
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Preference number: 3 (lower is better) Translates to: NNHVVVTNCTVT*VDSSNEGSRIR Trigger: TCTGATCCTTGATCCCTCATTGCTACTGTCCACTCATGTCACTGTGCAATTAGTTACAACCACGTGGTTATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR TCA 72 bp | TTCCTGCTCAAGTATAGAACATGGGCTGGCTTGCATTaGGCCCCCTTTATATGTACTTCAACTTGCGTTTAT | + |
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Preference number: 3 (lower is better) Translates to: FLLKYRTWAGLH*APFICTSTCVY Trigger: ATAAACGCAAGTTGAAGTACATATAAAGGGGGCTCAATGCAAGCCAGCCCATGTTCTATACTTGAGCAGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CAA 90 bp | CCTCTTGGCTACTGGGATGGGAATAGTCTAGAACTAACTGCCCTTTTACTTCATGAATCAGAAGGTGCTTaGAAGAGTAGATGTTTCACT | + |
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Preference number: 3 (lower is better) Translates to: PLGYWDGNSLELTALLLHESEGA*KSRCFT Trigger: AGTGAAACATCTACTCTTCAAAGCACCTTCTGATTC...ATGAAGTAAAAGGGCAGTTAGTTCTAGACTATTCCCATCCCAGTAGCCAAGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR TCA 72 bp | TATATTGTTCAGAGCTCCTTGATGCTGTTTTGTCAATaGCAGGGGAATCTATGTTGCTTGGGAACCTACGAT | + |
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Preference number: 3 (lower is better) Translates to: YIVQSSLMLFCQ*QGNLCCLGTYD Trigger: ATCGTAGGTTCCCAAGCAACATAGATTCCCCTGTCATTGACAAAACAGCATCAAGGAGCTCTGAACAATATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR-3UTR CAA 90 bp | GCTTGCATTGAGCCCCCTTTATATGTACTTCAACTTGCGTTTATACTCAGACAAGAATCAGAAGGTGCTTaGAAGAGTAGATGTTTCACT | + |
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Preference number: 3 (lower is better) Translates to: ACIEPPLYVLQLAFILRQESEGA*KSRCFT Trigger: AGTGAAACATCTACTCTTCAAAGCACCTTCTGATTC...TTGTCTGAGTATAAACGCAAGTTGAAGTACATATAAAGGGGGCTCAATGCAAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR TCA 72 bp | ATGTGTGTTACGTATGTACAGATGGTTTATCATCAATaGTCCATCTTCATAGCACTGCGGTGTGCTAAATTA | + |
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Preference number: 3 (lower is better) Translates to: MCVTYVQMVYHQ*SIFIALRCAKL Trigger: TAATTTAGCACACCGCAGTGCTATGAAGATGGATCATTGATGATAAACCATCTGTACATACGTAACACACAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| CDS-3UTR TCA 90 bp | CTCCAGCTGATGCTCGAGTGGGATGCTGATTTAACCCAATCCCAAGCCTGGGAGCCGTTTTACTTCGTCTaGATCCCAGCCATCAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: LQLMLEWDADLTQSQAWEPFYFV*IPAIRE Trigger: TTCCCTGATGGCTGGGATTCAGACGAAGTAAAACGG...CTCCCAGGCTTGGGATTGGGTTAAATCAGCATCCCACTCGAGCATCAGCTGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| CDS-3UTR TCA 90 bp | GCATTGAGCCCCCTTTATATGTACTTCAACTTGCGTTTATACTCAGACAATGAAAGCTTGGCAGCCTCCTaGGCCGGGAGCATCGCGGCG | + |
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Preference number: 4 (lower is better) Translates to: ALSPLYMYFNLRLYSDNESLAAS*AGSIAA Trigger: CGCCGCGATGCTCCCGGCTCAGGAGGCTGCCAAGCT...TTCATTGTCTGAGTATAAACGCAAGTTGAAGTACATATAAAGGGGGCTCAATGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197992.2 |
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| CDS-3UTR CCA 90 bp | TATCAAGTATTTCTCTGTTGTTGGACTGAGGCAGGACATGTTATAAGGGCAACGTGGTGTGGTACAGCTTaGCAGCCTCCTGAGCCGGGA | + |
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Preference number: 4 (lower is better) Translates to: YQVFLCCWTEAGHVIRATWCGTA*QPPEPG Trigger: TCCCGGCTCAGGAGGCTGCCAAGCTGTACCACACCA...CGTTGCCCTTATAACATGTCCTGCCTCAGTCCAACAACAGAGAAATACTTGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197992.2 |
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| CDS-3UTR TCA 90 bp | GCTTGCATTGAGCCCCCTTTATATGTACTTCAACTTGCGTTTATACTCAGACAAGCGTGGAGAAGTCCGTaGAGCTACCCCTGCAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: ACIEPPLYVLQLAFILRQAWRSP*SYPCRS Trigger: TGACCTGCAGGGGTAGCTTCACGGACTTCTCCACGC...TTGTCTGAGTATAAACGCAAGTTGAAGTACATATAAAGGGGGCTCAATGCAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000197992.2 |
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| CDS-3UTR GCA 90 bp | TGCTGTTTTGTCAATGACAGGGGAATCTATGTTGCTTGGGAACCTACGATGTCTAGAAGCCGTTGCCGATaGAGTAGTGGAAGAGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: CCFVNDRGIYVAWEPTMSRSRCR*SSGRAR Trigger: TCGGGCTCTTCCACTACTGCATCGGCAACGGCTTCT...AGACATCGTAGGTTCCCAAGCAACATAGATTCCCCTGTCATTGACAAAACAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197992.2 |
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| CDS-3UTR TCA 90 bp | CCTCTTGGCTACTGGGATGGGAATAGTCTAGAACTAACTGCCCTTTTACTTCATCCGTTTTACTTCGTCTaGATCCCAGCCATCAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: PLGYWDGNSLELTALLLHPFYFV*IPAIRE Trigger: TTCCCTGATGGCTGGGATTCAGACGAAGTAAAACGG...ATGAAGTAAAAGGGCAGTTAGTTCTAGACTATTCCCATCCCAGTAGCCAAGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| CDS-3UTR GCA 90 bp | AGGAACCTAATACCTTCTGATTTTAGTATAGATATAGAGATGCCTCCCCTTAAACCCGGGAGAAGCCGTTaGCGATGCAGTAGTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: RNLIPSDFSIDIEMPPLKPGRSR*RCSSGR Trigger: TCTTCCACTACTGCATCGGCAACGGCTTCTCCCGGG...TTTAAGGGGAGGCATCTCTATATCTATACTAAAATCAGAAGGTATTAGGTTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197992.2 |
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| 3UTR CAA 72 bp | CTTGATGCTGTTTTGTCAATGACAGGGGAATCTATGTaGCTTGGGAACCTACGATGTCTGGATGTACTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LDAVLSMTGESM*LGNLRCLDVLP Trigger: AGGAAGTACATCCAGACATCGTAGGTTCCCAAGCAACATAGATTCCCCTGTCATTGACAAAACAGCATCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| CDS-3UTR GCA 90 bp | CAGAAACATTTCCTTCGTGATAAGTCGTACAAACAGATTAAACTGAACACACATGCAGCGGAGGTGAGCTaGATCCAAGCACAGATCTTG | + |
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Preference number: 4 (lower is better) Translates to: QKHFLRDKSYKQIKLNTHAAEVS*IQAQIL Trigger: CAAGATCTGTGCTTGGATGCAGCTCACCTCCGCTGC...ATGTGTGTTCAGTTTAATCTGTTTGTACGACTTATCACGAAGGAAATGTTTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197992.2 |
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| 3UTR CAA 72 bp | ACTCGAGTCTCTGCAGATCTAGAATCAGAAGGTGCTTaGAAGAGTAGATGTTTCACTTTTGTGTGTAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: TRVSADLESEGA*KSRCFTFVCSH Trigger: ATGACTACACACAAAAGTGAAACATCTACTCTTCAAAGCACCTTCTGATTCTAGATCTGCAGAGACTCGAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| 3UTR CAA 72 bp | AACTTTCTATATTGTTCAGAGCTCCTTGATGCTGTTTaGTCAATGACAGGGGAATCTATGTTGCTTGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: NFLYCSELLDAV*SMTGESMLLGN Trigger: GTTCCCAAGCAACATAGATTCCCCTGTCATTGACAAAACAGCATCAAGGAGCTCTGAACAATATAGAAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| CDS-3UTR CAA 90 bp | ACGATGTCTGGATGTACTTCCTGTGATTCACAGTTTGATGGAGTCATAGCACATCCCGAAATAGCCGGCTaGCGGGGTGTCCACGCCGTC | + |
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Preference number: 5 (lower is better) Translates to: TMSGCTSCDSQFDGVIAHPEIAG*RGVHAV Trigger: GACGGCGTGGACACCCCGCAAGCCGGCTATTTCGGG...ATGTGCTATGACTCCATCAAACTGTGAATCACAGGAAGTACATCCAGACATCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197992.2 |
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| CDS-3UTR CAA 90 bp | TGCTGTTTTGTCAATGACAGGGGAATCTATGTTGCTTGGGAACCTACGATGTCTGCCCCAAGAGTGTACTaGTCTGTCTTCTCTCCGCAC | + |
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Preference number: 5 (lower is better) Translates to: CCFVNDRGIYVAWEPTMSAPRVY*SVFSPH Trigger: GTGCGGAGAGAAGACAGACAAGTACACTCTTGGGGC...AGACATCGTAGGTTCCCAAGCAACATAGATTCCCCTGTCATTGACAAAACAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| CDS-3UTR CAA 90 bp | AAAAATATGAGCACGGTCTTATGGGAGCATAAGAGAGGGCAACCTGATTCTTGTGCCCCAAGAGTGTACTaGTCTGTCTTCTCTCCGCAC | + |
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Preference number: 5 (lower is better) Translates to: KNMSTVLWEHKRGQPDSCAPRVY*SVFSPH Trigger: GTGCGGAGAGAAGACAGACAAGTACACTCTTGGGGC...ACAAGAATCAGGTTGCCCTCTCTTATGCTCCCATAAGACCGTGCTCATATTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| CDS-3UTR CAA 90 bp | CATAGCTCCTCTCAGAAAAATTACTCGAGTCTCTGCAGATCTAGAATCAGAAGGTGCCATCAAGCTGTCTaGTCGGTTCCCAAGCACAAA | + |
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Preference number: 5 (lower is better) Translates to: HSSSQKNYSSLCRSRIRRCHQAV*SVPKHK Trigger: TTTGTGCTTGGGAACCGACAAGACAGCTTGATGGCA...CCTTCTGATTCTAGATCTGCAGAGACTCGAGTAATTTTTCTGAGAGGAGCTATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| CDS-3UTR CAA 90 bp | AGGAACCTAATACCTTCTGATTTTAGTATAGATATAGAGATGCCTCCCCTTAAATGCCATCAAGCTGTCTaGTCGGTTCCCAAGCACAAA | + |
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Preference number: 5 (lower is better) Translates to: RNLIPSDFSIDIEMPPLKCHQAV*SVPKHK Trigger: TTTGTGCTTGGGAACCGACAAGACAGCTTGATGGCA...TTTAAGGGGAGGCATCTCTATATCTATACTAAAATCAGAAGGTATTAGGTTCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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| CDS CAA 90 bp | GCGATGATGAGCATCATGGAGAGGCCGATGAAGAAGGAGGCGGCTTaGAAGGCGCCCGAGGGCAGCGTGGAGAAGTCCGTGAAGCTACCC | + |
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Preference number: 6 (lower is better) Translates to: AMMSIMERPMKKEAA*KAPEGSVEKSVKLP Trigger: GGGTAGCTTCACGGACTTCTCCACGCTGCCCTCGGGCGCCTTCAAAGCCGCCTCCTTCTTCATCGGCCTCTCCATGATGCTCATCATCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197992.2 |
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| CDS CAA 72 bp | TACGCCCAGCGGACCGAGCAGGCCCCAAGAGTGTACTaGTCTGTCTTCTCTCCGCACATCCGTTTTACTTCG | + |
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Preference number: 6 (lower is better) Translates to: YAQRTEQAPRVY*SVFSPHIRFTS Trigger: CGAAGTAAAACGGATGTGCGGAGAGAAGACAGACAAGTACACTCTTGGGGCCTGCTCGGTCCGCTGGGCGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000196406.2 ENSMUST00000197992.2 |
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