RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LHFPL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045312

Ensembl transcript IDs: ENSMUST00000054274.8, ENSMUST00000118195.2, ENSMUST00000121618.2, ENSMUST00000156071.2, ENSMUST00000223423.2

Found 195 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCTGGTCTCATTATCTGCACTGCAGCCAGCATGTCCAAGAGCGCTaGTTGGTGGGTGATGCCCCTCACTGGTCCCAGGAAGGCCCGGCC +
Preference number: 1 (lower is better)
Translates to: VWSHYLHCSQHVQER*LVGDAPHWSQEGPA
Trigger: GGCCGGGCCTTCCTGGGACCAGTGAGGGGCATCACCCACCAAGCAGCGCTCTTGGACATGCTGGCTGCAGTGCAGATAATGAGACCAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CCA 90 bp CTAGAAAAACCGCCAGAGGAGACAGGGCTATCACAGGCGCTAGGCTaGCTGCAGGGAGCAGGCAGCTATCTGCCTTACTGCCAGGGGCCT +
Preference number: 1 (lower is better)
Translates to: LEKPPEETGLSQALG*LQGAGSYLPYCQGP
Trigger: AGGCCCCTGGCAGTAAGGCAGATAGCTGCCTGCTCCCTGCAGCCAGCCTAGCGCCTGTGATAGCCCTGTCTCCTCTGGCGGTTTTTCTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 90 bp CTTGGTCCAGCCCCTGCTTTCACGCTAACCTGGGGATGGGATTCTTaGTGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAAC +
Preference number: 1 (lower is better)
Translates to: LGPAPAFTLTWGWDS*CRAVSQRQQALWTN
Trigger: GTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAAGAATCCCATCCCCAGGTTAGCGTGAAAGCAGGGGCTGGACCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 90 bp GAAGAGGCGACACACAGCTTCACATTTCACACGGAAGACCAGCACTaGCTGGGCCTGGCTTGCTGGATCGACCCTCCCATAAACATAGTG +
Preference number: 1 (lower is better)
Translates to: EEATHSFTFHTEDQH*LGLACWIDPPINIV
Trigger: CACTATGTTTATGGGAGGGTCGATCCAGCAAGCCAGGCCCAGTCAGTGCTGGTCTTCCGTGTGAAATGTGAAGCTGTGTGTCGCCTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR CCA 90 bp CCCTCCTCCAGCCACCATTCTGAGATGCTCATAAGCACAAAGCTATaGACCAAATCCTGCCTCCAACTACCCCGAGGCTGGGTAAACCTC +
Preference number: 1 (lower is better)
Translates to: PSSSHHSEMLISTKL*TKSCLQLPRGWVNL
Trigger: GAGGTTTACCCAGCCTCGGGGTAGTTGGAGGCAGGATTTGGTCCATAGCTTTGTGCTTATGAGCATCTCAGAATGGTGGCTGGAGGAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR GCA 90 bp TGGAAAGCAGAGACAGGAAAATTCAGTCTGCAAACGCTGAGGTTCTaGCCACCCCTCCCTGTGAACATCTGCACGAACCACAGCTGGTCT +
Preference number: 1 (lower is better)
Translates to: WKAETGKFSLQTLRF*PPLPVNICTNHSWS
Trigger: AGACCAGCTGTGGTTCGTGCAGATGTTCACAGGGAGGGGTGGGCAGAACCTCAGCGTTTGCAGACTGAATTTTCCTGTCTCTGCTTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR GCA 90 bp CAGGCGCTAGGCTGGCTGCAGGGAGCAGGCAGCTATCTGCCTTACTaGCAGGGGCCTGTACTTTTATTCTTATGTGATTGTCTGTCTTTA +
Preference number: 1 (lower is better)
Translates to: QALGWLQGAGSYLPY*QGPVLLFLCDCLSL
Trigger: TAAAGACAGACAATCACATAAGAATAAAAGTACAGGCCCCTGGCAGTAAGGCAGATAGCTGCCTGCTCCCTGCAGCCAGCCTAGCGCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 90 bp AAGCCACAGACCCCCAAGTGTTTGTGCTGTATATCAATGAGAAGCTaGGCACAGATGCAGGCAGAATACTTGTCTGGTCCTAGTGATGGT +
Preference number: 1 (lower is better)
Translates to: KPQTPKCLCCISMRS*AQMQAEYLSGPSDG
Trigger: ACCATCACTAGGACCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCACAAACACTTGGGGGTCTGTGGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR GCA 90 bp GCAGATGGTCCGTTCATTCCCTGGAAAGGTGTCTCTGCTATAAAATaGAATCTCGTCCCATCAAGTCAGGATGTAGGCAGTTTTCATTGT +
Preference number: 1 (lower is better)
Translates to: ADGPFIPWKGVSAIK*NLVPSSQDVGSFHC
Trigger: ACAATGAAAACTGCCTACATCCTGACTTGATGGGACGAGATTGCATTTTATAGCAGAGACACCTTTCCAGGGAATGAACGGACCATCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 90 bp CAGCTATCTGCCTTACTGCCAGGGGCCTGTACTTTTATTCTTATGTaGTTGTCTGTCTTTATTCAAATCCTGAGGAGAGCTCCACTGATC +
Preference number: 1 (lower is better)
Translates to: QLSALLPGACTFILM*LSVFIQILRRAPLI
Trigger: GATCAGTGGAGCTCTCCTCAGGATTTGAATAAAGACAGACAATCACATAAGAATAAAAGTACAGGCCCCTGGCAGTAAGGCAGATAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 90 bp TGGTCTCATTATCTGCACTGCAGCCAGCATGTCCAAGAGCGCTGCTaGGTGGGTGATGCCCCTCACTGGTCCCAGGAAGGCCCGGCCGGG +
Preference number: 2 (lower is better)
Translates to: WSHYLHCSQHVQERC*VGDAPHWSQEGPAG
Trigger: CCCGGCCGGGCCTTCCTGGGACCAGTGAGGGGCATCACCCACCAAGCAGCGCTCTTGGACATGCTGGCTGCAGTGCAGATAATGAGACCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR TCA 90 bp AGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGCTGGAGACGCTTCCAGGCCTGCGCTGCTTGGTGGGTaGTGCCCCTCACTGGTCCCA +
Preference number: 2 (lower is better)
Translates to: SVSKLCGPTPEAGDASRPALLGG*CPSLVP
Trigger: TGGGACCAGTGAGGGGCATCACCCACCAAGCAGCGC...AGGCCTGGAAGCGTCTCCAGCTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp AGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGCTGGAGACGCTTCCAGGCCTGGAGTAGGTCCACTGTaGGGTTCTGCACTGCCCCTG +
Preference number: 2 (lower is better)
Translates to: SVSKLCGPTPEAGDASRPGVGPL*GSALPL
Trigger: CAGGGGCAGTGCAGAACCCCACAGTGGACCTACTCC...AGGCCTGGAAGCGTCTCCAGCTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 90 bp GCTTGGTCCAGCCCCTGCTTTCACGCTAACCTGGGGATGGGATTCTaGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAA +
Preference number: 2 (lower is better)
Translates to: AWSSPCFHANLGMGF*MQGSEPASASSVDQ
Trigger: TTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAAGAATCCCATCCCCAGGTTAGCGTGAAAGCAGGGGCTGGACCAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR TCA 90 bp ACCGCTAGGGAGGGTCTCTGTCTCTGCATGGTTCTTATGATGCCAGACTCAGGTCGTAGGCAGGTGCAGTaGGCTTGGTCCAGCCCCTGC +
Preference number: 2 (lower is better)
Translates to: TAREGLCLCMVLMMPDSGRRQVQ*AWSSPC
Trigger: GCAGGGGCTGGACCAAGCTCACTGCACCTGCCTACG...ACCTGAGTCTGGCATCATAAGAACCATGCAGAGACAGAGACCCTCCCTAGCGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp TTGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGCAAACGCTGAGGTTCTaGCCACCCCTCCCTGTGAAC +
Preference number: 2 (lower is better)
Translates to: LMQGSEPASASSVDQHQKQTLRF*PPLPVN
Trigger: GTTCACAGGGAGGGGTGGGCAGAACCTCAGCGTTTG...CTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp ACCGCTAGGGAGGGTCTCTGTCTCTGCATGGTTCTTATGATGCCAGACTCAGGTGGAGTAGGTCCACTGTaGGGTTCTGCACTGCCCCTG +
Preference number: 2 (lower is better)
Translates to: TAREGLCLCMVLMMPDSGGVGPL*GSALPL
Trigger: CAGGGGCAGTGCAGAACCCCACAGTGGACCTACTCC...ACCTGAGTCTGGCATCATAAGAACCATGCAGAGACAGAGACCCTCCCTAGCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp AGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGCTGGAGACGCTTCCAGGCCTGAACCACAGCTGGTCTaGAGGCTGAAGTCCTTGAAG +
Preference number: 2 (lower is better)
Translates to: SVSKLCGPTPEAGDASRPEPQLV*RLKSLK
Trigger: CTTCAAGGACTTCAGCCTCCAGACCAGCTGTGGTTC...AGGCCTGGAAGCGTCTCCAGCTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TTGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGTGCGAGCAGTGCCAATaGGGCTGGAAAGCAGAGACA +
Preference number: 2 (lower is better)
Translates to: LMQGSEPASASSVDQHQKCEQCQ*GWKAET
Trigger: TGTCTCTGCTTTCCAGCCCCATTGGCACTGCTCGCA...CTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR TCA 90 bp AGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGCTGGAGACGCTTCCAGGCCTATCACTATCCTTCATTaGGCCCTGGGGACATGGAGT +
Preference number: 2 (lower is better)
Translates to: SVSKLCGPTPEAGDASRPITILH*ALGTWS
Trigger: ACTCCATGTCCCCAGGGCTCAATGAAGGATAGTGAT...AGGCCTGGAAGCGTCTCCAGCTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR TCA 90 bp TTCTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCCTTGATGCAGGGCAGTaGGCCAGCGTCAGCAAGCTC +
Preference number: 2 (lower is better)
Translates to: FCLWKKSPTVSEAPIHPFLDAGQ*ASVSKL
Trigger: GAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAAG...GAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp ACCGCTAGGGAGGGTCTCTGTCTCTGCATGGTTCTTATGATGCCAGACTCAGGTTCCAGGCCTAGCTCCTaGTTTCTCTGCGAGCAGTGC +
Preference number: 2 (lower is better)
Translates to: TAREGLCLCMVLMMPDSGSRPSS*FLCEQC
Trigger: GCACTGCTCGCAGAGAAAGCAGGAGCTAGGCCTGGA...ACCTGAGTCTGGCATCATAAGAACCATGCAGAGACAGAGACCCTCCCTAGCGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TTGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGCAACTACCCCGAGGCTaGGTAAACCTCTTCTCTGCT +
Preference number: 2 (lower is better)
Translates to: LMQGSEPASASSVDQHQKQLPRG*VNLFSA
Trigger: AGCAGAGAAGAGGTTTACCCAGCCTCGGGGTAGTTG...CTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp AGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGCTGGAGACGCTTCCAGGCCTTCTCATTATCTGCACTaGAGCCAGCATGTCCAAGAG +
Preference number: 2 (lower is better)
Translates to: SVSKLCGPTPEAGDASRPSHYLH*SQHVQE
Trigger: CTCTTGGACATGCTGGCTGCAGTGCAGATAATGAGA...AGGCCTGGAAGCGTCTCCAGCTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp TTCTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCCAAACGCTGAGGTTCTaGCCACCCCTCCCTGTGAAC +
Preference number: 2 (lower is better)
Translates to: FCLWKKSPTVSEAPIHPFQTLRF*PPLPVN
Trigger: GTTCACAGGGAGGGGTGGGCAGAACCTCAGCGTTTG...GAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp TTCTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCAGTGGTTCTGTGCCCTaGGTAGGCAGGTGCAGTGAG +
Preference number: 2 (lower is better)
Translates to: FCLWKKSPTVSEAPIHPFSGSVP*VGRCSE
Trigger: CTCACTGCACCTGCCTACGCAGGGCACAGAACCACT...GAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp GTGCTGTATATCAATGAGAAGCTGAGCACAGATGCAGGCAGAATACTTGTCTGGTCACAGGCGCTAGGCTaGCTGCAGGGAGCAGGCAGC +
Preference number: 2 (lower is better)
Translates to: VLYINEKLSTDAGRILVWSQALG*LQGAGS
Trigger: GCTGCCTGCTCCCTGCAGCCAGCCTAGCGCCTGTGA...CCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 90 bp CAGTGTGGCAGAGAGGTCATGTCTTCATTTATGACTGTTACCAGGTaGCTAGGAGTGCACTGCCCCCTTGACCCCCAAAGAGCATGCGCA +
Preference number: 2 (lower is better)
Translates to: QCGREVMSSFMTVTR*LGVHCPLDPQRACA
Trigger: TGCGCATGCTCTTTGGGGGTCAAGGGGGCAGTGCACTCCTAGCAACCTGGTAACAGTCATAAATGAAGACATGACCTCTCTGCCACACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp CTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCAGAAACCTCTTCTCTGCTaGCAGAGAGATCACCGCCTG +
Preference number: 2 (lower is better)
Translates to: LPMEEVSHSLRSPHSSLQKPLLC*QRDHRL
Trigger: CAGGCGGTGATCTCTCTGGCAGCAGAGAAGAGGTTT...CTGAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp TTGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGAGCTATCTGCCTTACTaGCAGGGGCCTGTACTTTTA +
Preference number: 2 (lower is better)
Translates to: LMQGSEPASASSVDQHQKSYLPY*QGPVLL
Trigger: TAAAAGTACAGGCCCCTGGCAGTAAGGCAGATAGCT...CTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp CTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCAGCAACTACCCCGAGGCTaGGTAAACCTCTTCTCTGCT +
Preference number: 2 (lower is better)
Translates to: LPMEEVSHSLRSPHSSLQQLPRG*VNLFSA
Trigger: AGCAGAGAAGAGGTTTACCCAGCCTCGGGGTAGTTG...CTGAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCTCACAGGCGCTAGGCTaGCTGCAGGGAGCAGGCAGC +
Preference number: 2 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFSQALG*LQGAGS
Trigger: GCTGCCTGCTCCCTGCAGCCAGCCTAGCGCCTGTGA...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR TCA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCCGTAGGCAGGTGCAGTaGGCTTGGTCCAGCCCCTGC +
Preference number: 2 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSRRQVQ*AWSSPC
Trigger: GCAGGGGCTGGACCAAGCTCACTGCACCTGCCTACG...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp ACCGCTAGGGAGGGTCTCTGTCTCTGCATGGTTCTTATGATGCCAGACTCAGGTTCTGGTCTCATTATCTaGACTGCAGCCAGCATGTCC +
Preference number: 2 (lower is better)
Translates to: TAREGLCLCMVLMMPDSGSGLII*TAASMS
Trigger: GGACATGCTGGCTGCAGTGCAGATAATGAGACCAGA...ACCTGAGTCTGGCATCATAAGAACCATGCAGAGACAGAGACCCTCCCTAGCGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TTTCTGGCTGCTTTGGTCAAATGGGTAACTTATGGAAACGGGATTAAAAGCCCTTCACAGGCGCTAGGCTaGCTGCAGGGAGCAGGCAGC +
Preference number: 2 (lower is better)
Translates to: FLAALVKWVTYGNGIKSPSQALG*LQGAGS
Trigger: GCTGCCTGCTCCCTGCAGCCAGCCTAGCGCCTGTGA...AGGGCTTTTAATCCCGTTTCCATAAGTTACCCATTTGACCAAAGCAGCCAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TTCTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCGAACCACAGCTGGTCTaGAGGCTGAAGTCCTTGAAG +
Preference number: 2 (lower is better)
Translates to: FCLWKKSPTVSEAPIHPFEPQLV*RLKSLK
Trigger: CTTCAAGGACTTCAGCCTCCAGACCAGCTGTGGTTC...GAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR CAA 90 bp CAGCTTCACATTTCACACGGAAGACCAGCACTGACTGGGCCTGGCTaGCTGGATCGACCCTCCCATAAACATAGTGATTGTTCTAGCGTA +
Preference number: 2 (lower is better)
Translates to: QLHISHGRPALTGPG*LDRPSHKHSDCSSV
Trigger: TACGCTAGAACAATCACTATGTTTATGGGAGGGTCGATCCAGCAAGCCAGGCCCAGTCAGTGCTGGTCTTCCGTGTGAAATGTGAAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp TTCAGGCTGACAGAAGAGGCGACACACAGCTTCACATTTCACACGGAAGACCAGTCTGGTCTCATTATCTaGACTGCAGCCAGCATGTCC +
Preference number: 2 (lower is better)
Translates to: FRLTEEATHSFTFHTEDQSGLII*TAASMS
Trigger: GGACATGCTGGCTGCAGTGCAGATAATGAGACCAGA...CTGGTCTTCCGTGTGAAATGTGAAGCTGTGTGTCGCCTCTTCTGTCAGCCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp GAACCACAGCTGGTCTGGAGGCTGAAGTCCTTGAAGGCAGAGAACACTGGTTTCAGCTATCTGCCTTACTaGCAGGGGCCTGTACTTTTA +
Preference number: 2 (lower is better)
Translates to: EPQLVWRLKSLKAENTGFSYLPY*QGPVLL
Trigger: TAAAAGTACAGGCCCCTGGCAGTAAGGCAGATAGCT...GAAACCAGTGTTCTCTGCCTTCAAGGACTTCAGCCTCCAGACCAGCTGTGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp CTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCAGTGTTATTGCACGGAATaGTCTGTCCTAAGCCAGACG +
Preference number: 2 (lower is better)
Translates to: LPMEEVSHSLRSPHSSLQCYCTE*SVLSQT
Trigger: CGTCTGGCTTAGGACAGACCATTCCGTGCAATAACA...CTGAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TTTCTGGCTGCTTTGGTCAAATGGGTAACTTATGGAAACGGGATTAAAAGCCCTGGAGTAGGTCCACTGTaGGGTTCTGCACTGCCCCTG +
Preference number: 2 (lower is better)
Translates to: FLAALVKWVTYGNGIKSPGVGPL*GSALPL
Trigger: CAGGGGCAGTGCAGAACCCCACAGTGGACCTACTCC...AGGGCTTTTAATCCCGTTTCCATAAGTTACCCATTTGACCAAAGCAGCCAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TTCTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCTGTTATTGCACGGAATaGTCTGTCCTAAGCCAGACG +
Preference number: 2 (lower is better)
Translates to: FCLWKKSPTVSEAPIHPFCYCTE*SVLSQT
Trigger: CGTCTGGCTTAGGACAGACCATTCCGTGCAATAACA...GAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR TCA 90 bp TTCAGGCTGACAGAAGAGGCGACACACAGCTTCACATTTCACACGGAAGACCAGATATCAATGAGAAGCTaGGCACAGATGCAGGCAGAA +
Preference number: 2 (lower is better)
Translates to: FRLTEEATHSFTFHTEDQISMRS*AQMQAE
Trigger: TTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATAT...CTGGTCTTCCGTGTGAAATGTGAAGCTGTGTGTCGCCTCTTCTGTCAGCCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp CAGTGTGGCAGAGAGGTCATGTCTTCATTTATGACTGTTACCAGGTTGCTAGGATTTCTCTGCGAGCAGTaGCAATGGGGCTGGAAAGCA +
Preference number: 2 (lower is better)
Translates to: QCGREVMSSFMTVTRLLGFLCEQ*QWGWKA
Trigger: TGCTTTCCAGCCCCATTGGCACTGCTCGCAGAGAAA...TCCTAGCAACCTGGTAACAGTCATAAATGAAGACATGACCTCTCTGCCACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCAGTGGTTCTGTGCCCTaGGTAGGCAGGTGCAGTGAG +
Preference number: 2 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSSGSVP*VGRCSE
Trigger: CTCACTGCACCTGCCTACGCAGGGCACAGAACCACT...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp TTCTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCTCAGGTGTTTCTGGCTaGTTTGGTCAAATGGGTAAC +
Preference number: 2 (lower is better)
Translates to: FCLWKKSPTVSEAPIHPFSGVSG*FGQMGN
Trigger: GTTACCCATTTGACCAAAGCAGCCAGAAACACCTGA...GAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp CTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCAGCAAAACTGTGTTTCGTaGAAAGTACTTAGCCCAGGT +
Preference number: 2 (lower is better)
Translates to: LPMEEVSHSLRSPHSSLQQNCVS*KVLSPG
Trigger: ACCTGGGCTAAGTACTTTGCACGAAACACAGTTTTG...CTGAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp GTGCTGTATATCAATGAGAAGCTGAGCACAGATGCAGGCAGAATACTTGTCTGGCAACTACCCCGAGGCTaGGTAAACCTCTTCTCTGCT +
Preference number: 2 (lower is better)
Translates to: VLYINEKLSTDAGRILVWQLPRG*VNLFSA
Trigger: AGCAGAGAAGAGGTTTACCCAGCCTCGGGGTAGTTG...CCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp GAACCACAGCTGGTCTGGAGGCTGAAGTCCTTGAAGGCAGAGAACACTGGTTTCATAAGCACAAAGCTATaGACCAAATCCTGCCTCCAA +
Preference number: 2 (lower is better)
Translates to: EPQLVWRLKSLKAENTGFISTKL*TKSCLQ
Trigger: TTGGAGGCAGGATTTGGTCCATAGCTTTGTGCTTAT...GAAACCAGTGTTCTCTGCCTTCAAGGACTTCAGCCTCCAGACCAGCTGTGGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCTGCGAGCAGTGCCAATaGGGCTGGAAAGCAGAGACA +
Preference number: 2 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFCEQCQ*GWKAET
Trigger: TGTCTCTGCTTTCCAGCCCCATTGGCACTGCTCGCA...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TTCTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCGCTGCTTTGGTCAAATaGGTAACTTATGGAAACGGG +
Preference number: 2 (lower is better)
Translates to: FCLWKKSPTVSEAPIHPFAALVK*VTYGNG
Trigger: CCCGTTTCCATAAGTTACCCATTTGACCAAAGCAGC...GAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR CAA 90 bp GGGGCTGTGGAAGATAGCTCCAGTAGGTCACGACTGGTTCTTCACTaGGTTCAAATGATGAAGACTGTGTCACTAGGCCATAAAGAAAGG +
Preference number: 2 (lower is better)
Translates to: GAVEDSSSRSRLVLH*VQMMKTVSLGHKER
Trigger: CCTTTCTTTATGGCCTAGTGACACAGTCTTCATCATTTGAACCAAGTGAAGAACCAGTCGTGACCTACTGGAGCTATCTTCCACAGCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR TCA 90 bp GTGCTGTATATCAATGAGAAGCTGAGCACAGATGCAGGCAGAATACTTGTCTGGATCACTATCCTTCATTaGGCCCTGGGGACATGGAGT +
Preference number: 2 (lower is better)
Translates to: VLYINEKLSTDAGRILVWITILH*ALGTWS
Trigger: ACTCCATGTCCCCAGGGCTCAATGAAGGATAGTGAT...CCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TTCAGGCTGACAGAAGAGGCGACACACAGCTTCACATTTCACACGGAAGACCAGATAAGCACAAAGCTATaGACCAAATCCTGCCTCCAA +
Preference number: 2 (lower is better)
Translates to: FRLTEEATHSFTFHTEDQISTKL*TKSCLQ
Trigger: TTGGAGGCAGGATTTGGTCCATAGCTTTGTGCTTAT...CTGGTCTTCCGTGTGAAATGTGAAGCTGTGTGTCGCCTCTTCTGTCAGCCTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCTGCGAGCAGTGCCAATaGGGCTGGAAAGCAGAGACA +
Preference number: 2 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSCEQCQ*GWKAET
Trigger: TGTCTCTGCTTTCCAGCCCCATTGGCACTGCTCGCA...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp GTGCTGTATATCAATGAGAAGCTGAGCACAGATGCAGGCAGAATACTTGTCTGGTTGCCACATGCTCCGTaGCACATGGACTTAGTGATC +
Preference number: 2 (lower is better)
Translates to: VLYINEKLSTDAGRILVWLPHAP*HMDLVI
Trigger: GATCACTAAGTCCATGTGCCACGGAGCATGTGGCAA...CCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCAC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR TCA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCATCACTATCCTTCATTaGGCCCTGGGGACATGGAGT +
Preference number: 2 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFITILH*ALGTWS
Trigger: ACTCCATGTCCCCAGGGCTCAATGAAGGATAGTGAT...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR TCA 90 bp GTGCTGTATATCAATGAGAAGCTGAGCACAGATGCAGGCAGAATACTTGTCTGGCAAGGGTGTAAACTCTaGACCAGGGTTGTAAACCTG +
Preference number: 2 (lower is better)
Translates to: VLYINEKLSTDAGRILVWQGCKL*TRVVNL
Trigger: CAGGTTTACAACCCTGGTTCAGAGTTTACACCCTTG...CCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp CAGTGTGGCAGAGAGGTCATGTCTTCATTTATGACTGTTACCAGGTTGCTAGGATCTCATTATCTGCACTaGAGCCAGCATGTCCAAGAG +
Preference number: 2 (lower is better)
Translates to: QCGREVMSSFMTVTRLLGSHYLH*SQHVQE
Trigger: CTCTTGGACATGCTGGCTGCAGTGCAGATAATGAGA...TCCTAGCAACCTGGTAACAGTCATAAATGAAGACATGACCTCTCTGCCACACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCTTTCTCTGCGAGCAGTaGCAATGGGGCTGGAAAGCA +
Preference number: 2 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSFLCEQ*QWGWKA
Trigger: TGCTTTCCAGCCCCATTGGCACTGCTCGCAGAGAAA...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp GTGCTGTATATCAATGAGAAGCTGAGCACAGATGCAGGCAGAATACTTGTCTGGGAGGGTCTCTGTCTCTaGATGGTTCTTATGATGCCA +
Preference number: 2 (lower is better)
Translates to: VLYINEKLSTDAGRILVWEGLCL*MVLMMP
Trigger: TGGCATCATAAGAACCATGCAGAGACAGAGACCCTC...CCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp TTCAGGCTGACAGAAGAGGCGACACACAGCTTCACATTTCACACGGAAGACCAGGTCTCTGCTATAAAATaGAATCTCGTCCCATCAAGT +
Preference number: 2 (lower is better)
Translates to: FRLTEEATHSFTFHTEDQVSAIK*NLVPSS
Trigger: ACTTGATGGGACGAGATTGCATTTTATAGCAGAGAC...CTGGTCTTCCGTGTGAAATGTGAAGCTGTGTGTCGCCTCTTCTGTCAGCCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TTCAGGCTGACAGAAGAGGCGACACACAGCTTCACATTTCACACGGAAGACCAGCAGTTAAGCAAAACTTaGTTACCTTGCTGTGACCTT +
Preference number: 2 (lower is better)
Translates to: FRLTEEATHSFTFHTEDQQLSKT*LPCCDL
Trigger: AAGGTCACAGCAAGGTAACCAAGTTTTGCTTAACTG...CTGGTCTTCCGTGTGAAATGTGAAGCTGTGTGTCGCCTCTTCTGTCAGCCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCGAACCACAGCTGGTCTaGAGGCTGAAGTCCTTGAAG +
Preference number: 2 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSEPQLV*RLKSLK
Trigger: CTTCAAGGACTTCAGCCTCCAGACCAGCTGTGGTTC...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCCAGTGCCAATGGGGCTaGAAAGCAGAGACAGGAAAA +
Preference number: 2 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFQCQWG*KAETGK
Trigger: TTTTCCTGTCTCTGCTTTCCAGCCCCATTGGCACTG...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCGAGGGTCTCTGTCTCTaGATGGTTCTTATGATGCCA +
Preference number: 2 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFEGLCL*MVLMMP
Trigger: TGGCATCATAAGAACCATGCAGAGACAGAGACCCTC...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp GTGCTGTATATCAATGAGAAGCTGAGCACAGATGCAGGCAGAATACTTGTCTGGGCTGCTTTGGTCAAATaGGTAACTTATGGAAACGGG +
Preference number: 2 (lower is better)
Translates to: VLYINEKLSTDAGRILVWAALVK*VTYGNG
Trigger: CCCGTTTCCATAAGTTACCCATTTGACCAAAGCAGC...CCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR TCA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCCAAGGGTGTAAACTCTaGACCAGGGTTGTAAACCTG +
Preference number: 2 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSQGCKL*TRVVNL
Trigger: CAGGTTTACAACCCTGGTTCAGAGTTTACACCCTTG...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCTCAGGTGTTTCTGGCTaGTTTGGTCAAATGGGTAAC +
Preference number: 2 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSSGVSG*FGQMGN
Trigger: GTTACCCATTTGACCAAAGCAGCCAGAAACACCTGA...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR GCA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCGTCTCTGCTATAAAATaGAATCTCGTCCCATCAAGT +
Preference number: 2 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFVSAIK*NLVPSS
Trigger: ACTTGATGGGACGAGATTGCATTTTATAGCAGAGAC...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CCA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCCAGTTAAGCAAAACTTaGTTACCTTGCTGTGACCTT +
Preference number: 2 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSQLSKT*LPCCDL
Trigger: AAGGTCACAGCAAGGTAACCAAGTTTTGCTTAACTG...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 72 bp CTGCAGCCAGCATGTCCAAGAGCGCTGCTTGGTGGGTaGTGCCCCTCACTGGTCCCAGGAAGGCCCGGCCGG +
Preference number: 3 (lower is better)
Translates to: LQPACPRALLGG*CPSLVPGRPGR
Trigger: CCGGCCGGGCCTTCCTGGGACCAGTGAGGGGCATCACCCACCAAGCAGCGCTCTTGGACATGCTGGCTGCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CCA 72 bp GTCCAAGAGCGCTGCTTGGTGGGTGATGCCCCTCACTaGTCCCAGGAAGGCCCGGCCGGGGCTGTGGAAGAT +
Preference number: 3 (lower is better)
Translates to: VQERCLVGDAPH*SQEGPAGAVED
Trigger: ATCTTCCACAGCCCCGGCCGGGCCTTCCTGGGACCAGTGAGGGGCATCACCCACCAAGCAGCGCTCTTGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CCA 72 bp CCCCTCACTGGTCCCAGGAAGGCCCGGCCGGGGCTGTaGAAGATAGCTCCAGTAGGTCACGACTGGTTCTTC +
Preference number: 3 (lower is better)
Translates to: PLTGPRKARPGL*KIAPVGHDWFF
Trigger: GAAGAACCAGTCGTGACCTACTGGAGCTATCTTCCACAGCCCCGGCCGGGCCTTCCTGGGACCAGTGAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CCA 72 bp CCGCCAGAGGAGACAGGGCTATCACAGGCGCTAGGCTaGCTGCAGGGAGCAGGCAGCTATCTGCCTTACTGC +
Preference number: 3 (lower is better)
Translates to: PPEETGLSQALG*LQGAGSYLPYC
Trigger: GCAGTAAGGCAGATAGCTGCCTGCTCCCTGCAGCCAGCCTAGCGCCTGTGATAGCCCTGTCTCCTCTGGCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CCA 72 bp ATCTGCACTGCAGCCAGCATGTCCAAGAGCGCTGCTTaGTGGGTGATGCCCCTCACTGGTCCCAGGAAGGCC +
Preference number: 3 (lower is better)
Translates to: ICTAASMSKSAA*WVMPLTGPRKA
Trigger: GGCCTTCCTGGGACCAGTGAGGGGCATCACCCACCAAGCAGCGCTCTTGGACATGCTGGCTGCAGTGCAGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 72 bp GCCCCTGCTTTCACGCTAACCTGGGGATGGGATTCTTaGTGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTG +
Preference number: 3 (lower is better)
Translates to: APAFTLTWGWDS*CRAVSQRQQAL
Trigger: CAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAAGAATCCCATCCCCAGGTTAGCGTGAAAGCAGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 72 bp GACTGTTACCAGGTTGCTAGGAGTGCACTGCCCCCTTaGCCCCCAAAGAGCATGCGCACAGGATCTGCGGCT +
Preference number: 3 (lower is better)
Translates to: DCYQVARSALPP*PPKSMRTGSAA
Trigger: AGCCGCAGATCCTGTGCGCATGCTCTTTGGGGGTCAAGGGGGCAGTGCACTCCTAGCAACCTGGTAACAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp CTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCAGGAGTGCACTGCCCCCTaGACCCCCAAAGAGCATGCG +
Preference number: 3 (lower is better)
Translates to: LPMEEVSHSLRSPHSSLQECTAP*TPKEHA
Trigger: CGCATGCTCTTTGGGGGTCAAGGGGGCAGTGCACTC...CTGAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR GCA 72 bp CATTATCTGCACTGCAGCCAGCATGTCCAAGAGCGCTaGTTGGTGGGTGATGCCCCTCACTGGTCCCAGGAA +
Preference number: 3 (lower is better)
Translates to: HYLHCSQHVQER*LVGDAPHWSQE
Trigger: TTCCTGGGACCAGTGAGGGGCATCACCCACCAAGCAGCGCTCTTGGACATGCTGGCTGCAGTGCAGATAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR GCA 72 bp ACACCAGAAGCTGGAGACGCTTCCAGGCCTAGCTCCTaGTTTCTCTGCGAGCAGTGCCAATGGGGCTGGAAA +
Preference number: 3 (lower is better)
Translates to: TPEAGDASRPSS*FLCEQCQWGWK
Trigger: TTTCCAGCCCCATTGGCACTGCTCGCAGAGAAAGCAGGAGCTAGGCCTGGAAGCGTCTCCAGCTTCTGGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp TTCAGGCTGACAGAAGAGGCGACACACAGCTTCACATTTCACACGGAAGACCAGGAGTGCACTGCCCCCTaGACCCCCAAAGAGCATGCG +
Preference number: 3 (lower is better)
Translates to: FRLTEEATHSFTFHTEDQECTAP*TPKEHA
Trigger: CGCATGCTCTTTGGGGGTCAAGGGGGCAGTGCACTC...CTGGTCTTCCGTGTGAAATGTGAAGCTGTGTGTCGCCTCTTCTGTCAGCCTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR TCA 72 bp CCTGCCTTGGTGAGTCAGGTCATCACTATCCTTCATTaGGCCCTGGGGACATGGAGTCTCCGACAGGACTCC +
Preference number: 3 (lower is better)
Translates to: PALVSQVITILH*ALGTWSLRQDS
Trigger: GGAGTCCTGTCGGAGACTCCATGTCCCCAGGGCTCAATGAAGGATAGTGATGACCTGACTCACCAAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CCA 72 bp TCTCACCCTGGCACTCAAACTGGAGTAGGTCCACTGTaGGGTTCTGCACTGCCCCTGTTAAGCCCTTTGTGC +
Preference number: 3 (lower is better)
Translates to: SHPGTQTGVGPL*GSALPLLSPLC
Trigger: GCACAAAGGGCTTAACAGGGGCAGTGCAGAACCCCACAGTGGACCTACTCCAGTTTGAGTGCCAGGGTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp TTGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGTGGAGGCTGAAGTCCTaGAAGGCAGAGAACACTGGT +
Preference number: 3 (lower is better)
Translates to: LMQGSEPASASSVDQHQKWRLKS*KAENTG
Trigger: ACCAGTGTTCTCTGCCTTCAAGGACTTCAGCCTCCA...CTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 72 bp ACACACAGCTTCACATTTCACACGGAAGACCAGCACTaGCTGGGCCTGGCTTGCTGGATCGACCCTCCCATA +
Preference number: 3 (lower is better)
Translates to: THSFTFHTEDQH*LGLACWIDPPI
Trigger: TATGGGAGGGTCGATCCAGCAAGCCAGGCCCAGTCAGTGCTGGTCTTCCGTGTGAAATGTGAAGCTGTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR GCA 72 bp GCTTCCAGGCCTAGCTCCTGCTTTCTCTGCGAGCAGTaGCAATGGGGCTGGAAAGCAGAGACAGGAAAATTC +
Preference number: 3 (lower is better)
Translates to: ASRPSSCFLCEQ*QWGWKAETGKF
Trigger: GAATTTTCCTGTCTCTGCTTTCCAGCCCCATTGGCACTGCTCGCAGAGAAAGCAGGAGCTAGGCCTGGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CCA 72 bp CAAATCCTGAGGAGAGCTCCACTGATCCTCTCACCCTaGCACTCAAACTGGAGTAGGTCCACTGTGGGGTTC +
Preference number: 3 (lower is better)
Translates to: QILRRAPLILSP*HSNWSRSTVGF
Trigger: GAACCCCACAGTGGACCTACTCCAGTTTGAGTGCCAGGGTGAGAGGATCAGTGGAGCTCTCCTCAGGATTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 72 bp CCGCTAGGGAGGGTCTCTGTCTCTGCATGGTTCTTATaGTGCCAGACTCAGGTGTTTCTGGCTGCTTTGGTC +
Preference number: 3 (lower is better)
Translates to: PLGRVSVSAWFL*CQTQVFLAALV
Trigger: GACCAAAGCAGCCAGAAACACCTGAGTCTGGCATCATAAGAACCATGCAGAGACAGAGACCCTCCCTAGCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR GCA 72 bp AGGGGCTATTCCATGTCCTTGTCTGGTCTCATTATCTaGACTGCAGCCAGCATGTCCAAGAGCGCTGCTTGG +
Preference number: 3 (lower is better)
Translates to: RGYSMSLSGLII*TAASMSKSAAW
Trigger: CCAAGCAGCGCTCTTGGACATGCTGGCTGCAGTGCAGATAATGAGACCAGACAAGGACATGGAATAGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR GCA 72 bp TGGCACTCAAACTGGAGTAGGTCCACTGTGGGGTTCTaGACTGCCCCTGTTAAGCCCTTTGTGCAGTTAAGC +
Preference number: 3 (lower is better)
Translates to: WHSNWSRSTVGF*TAPVKPFVQLS
Trigger: GCTTAACTGCACAAAGGGCTTAACAGGGGCAGTGCAGAACCCCACAGTGGACCTACTCCAGTTTGAGTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CCA 72 bp GACAGGACTCCCCAGGGGCTATTCCATGTCCTTGTCTaGTCTCATTATCTGCACTGCAGCCAGCATGTCCAA +
Preference number: 3 (lower is better)
Translates to: DRTPQGLFHVLV*SHYLHCSQHVQ
Trigger: TTGGACATGCTGGCTGCAGTGCAGATAATGAGACCAGACAAGGACATGGAATAGCCCCTGGGGAGTCCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp GTGCTGTATATCAATGAGAAGCTGAGCACAGATGCAGGCAGAATACTTGTCTGGGAGTGCACTGCCCCCTaGACCCCCAAAGAGCATGCG +
Preference number: 3 (lower is better)
Translates to: VLYINEKLSTDAGRILVWECTAP*TPKEHA
Trigger: CGCATGCTCTTTGGGGGTCAAGGGGGCAGTGCACTC...CCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR GCA 72 bp CTATTCCATGTCCTTGTCTGGTCTCATTATCTGCACTaGAGCCAGCATGTCCAAGAGCGCTGCTTGGTGGGT +
Preference number: 3 (lower is better)
Translates to: LFHVLVWSHYLH*SQHVQERCLVG
Trigger: ACCCACCAAGCAGCGCTCTTGGACATGCTGGCTGCAGTGCAGATAATGAGACCAGACAAGGACATGGAATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR GCA 72 bp GGCTGGCTGCAGGGAGCAGGCAGCTATCTGCCTTACTaGCAGGGGCCTGTACTTTTATTCTTATGTGATTGT +
Preference number: 3 (lower is better)
Translates to: GWLQGAGSYLPY*QGPVLLFLCDC
Trigger: ACAATCACATAAGAATAAAAGTACAGGCCCCTGGCAGTAAGGCAGATAGCTGCCTGCTCCCTGCAGCCAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR GCA 72 bp CACTCCACTTGCACCGCTAGGGAGGGTCTCTGTCTCTaGATGGTTCTTATGATGCCAGACTCAGGTGTTTCT +
Preference number: 3 (lower is better)
Translates to: HSTCTAREGLCL*MVLMMPDSGVS
Trigger: AGAAACACCTGAGTCTGGCATCATAAGAACCATGCAGAGACAGAGACCCTCCCTAGCGGTGCAAGTGGAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp TTCAGGCTGACAGAAGAGGCGACACACAGCTTCACATTTCACACGGAAGACCAGTGGAGGCTGAAGTCCTaGAAGGCAGAGAACACTGGT +
Preference number: 3 (lower is better)
Translates to: FRLTEEATHSFTFHTEDQWRLKS*KAENTG
Trigger: ACCAGTGTTCTCTGCCTTCAAGGACTTCAGCCTCCA...CTGGTCTTCCGTGTGAAATGTGAAGCTGTGTGTCGCCTCTTCTGTCAGCCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp GTGCTGTATATCAATGAGAAGCTGAGCACAGATGCAGGCAGAATACTTGTCTGGGCAGGTGCAGTGAGCTaGGTCCAGCCCCTGCTTTCA +
Preference number: 3 (lower is better)
Translates to: VLYINEKLSTDAGRILVWAGAVS*VQPLLS
Trigger: TGAAAGCAGGGGCTGGACCAAGCTCACTGCACCTGC...CCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp CTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCAGGGCTATTCCATGTCCTaGTCTGGTCTCATTATCTGC +
Preference number: 3 (lower is better)
Translates to: LPMEEVSHSLRSPHSSLQGYSMS*SGLIIC
Trigger: GCAGATAATGAGACCAGACAAGGACATGGAATAGCC...CTGAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp GAACCACAGCTGGTCTGGAGGCTGAAGTCCTTGAAGGCAGAGAACACTGGTTTCGGCTATTCCATGTCCTaGTCTGGTCTCATTATCTGC +
Preference number: 3 (lower is better)
Translates to: EPQLVWRLKSLKAENTGFGYSMS*SGLIIC
Trigger: GCAGATAATGAGACCAGACAAGGACATGGAATAGCC...GAAACCAGTGTTCTCTGCCTTCAAGGACTTCAGCCTCCAGACCAGCTGTGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp CTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCAGGTTCTGAACCAAGGCTaGGCTCTAAACCAACATAGC +
Preference number: 3 (lower is better)
Translates to: LPMEEVSHSLRSPHSSLQVLNQG*ALNQHS
Trigger: GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAAC...CTGAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCCTGGGGATGGGATTCTaGATGCAGGGCAGTGAGCCA +
Preference number: 3 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFLGMGF*MQGSEP
Trigger: TGGCTCACTGCCCTGCATCAAGAATCCCATCCCCAG...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCAGATCACCGCCTGCCTaGGTGAGTCAGGTCATCACT +
Preference number: 3 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFRSPPA*VSQVIT
Trigger: AGTGATGACCTGACTCACCAAGGCAGGCGGTGATCT...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 72 bp GGAAGAAGAGAAAGACCCCTCCTCCAGCCACCATTCTaGGATGCTCATAAGCACAAAGCTATGGACCAAATC +
Preference number: 3 (lower is better)
Translates to: GRRERPLLQPPF*DAHKHKAMDQI
Trigger: GATTTGGTCCATAGCTTTGTGCTTATGAGCATCTCAGAATGGTGGCTGGAGGAGGGGTCTTTCTCTTCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCTGGAGGCTGAAGTCCTaGAAGGCAGAGAACACTGGT +
Preference number: 3 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFWRLKS*KAENTG
Trigger: ACCAGTGTTCTCTGCCTTCAAGGACTTCAGCCTCCA...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCCATCACTATCCTTCATaGAGCCCTGGGGACATGGAG +
Preference number: 3 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSHHYPS*SPGDME
Trigger: CTCCATGTCCCCAGGGCTCAATGAAGGATAGTGATG...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR GCA 72 bp CCGTTCATTCCCTGGAAAGGTGTCTCTGCTATAAAATaGAATCTCGTCCCATCAAGTCAGGATGTAGGCAGT +
Preference number: 3 (lower is better)
Translates to: PFIPWKGVSAIK*NLVPSSQDVGS
Trigger: ACTGCCTACATCCTGACTTGATGGGACGAGATTGCATTTTATAGCAGAGACACCTTTCCAGGGAATGAACGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR GCA 72 bp TGCAGATGGTCCGTTCATTCCCTGGAAAGGTGTCTCTaGTATAAAATGCAATCTCGTCCCATCAAGTCAGGA +
Preference number: 3 (lower is better)
Translates to: CRWSVHSLERCL*YKMQSRPIKSG
Trigger: TCCTGACTTGATGGGACGAGATTGCATTTTATAGCAGAGACACCTTTCCAGGGAATGAACGGACCATCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CCA 72 bp GCCCCTGTTAAGCCCTTTGTGCAGTTAAGCAAAACTTaGTTACCTTGCTGTGACCTTCAGCATAGAACCTGT +
Preference number: 3 (lower is better)
Translates to: APVKPFVQLSKT*LPCCDLQHRTC
Trigger: ACAGGTTCTATGCTGAAGGTCACAGCAAGGTAACCAAGTTTTGCTTAACTGCACAAAGGGCTTAACAGGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CCA 72 bp TGCCAGACTCAGGTGTTTCTGGCTGCTTTGGTCAAATaGGTAACTTATGGAAACGGGATTAAAAGCCCTGAG +
Preference number: 3 (lower is better)
Translates to: CQTQVFLAALVK*VTYGNGIKSPE
Trigger: CTCAGGGCTTTTAATCCCGTTTCCATAAGTTACCCATTTGACCAAAGCAGCCAGAAACACCTGAGTCTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCGGCTATTCCATGTCCTaGTCTGGTCTCATTATCTGC +
Preference number: 3 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFGYSMS*SGLIIC
Trigger: GCAGATAATGAGACCAGACAAGGACATGGAATAGCC...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCGTTCTGAACCAAGGCTaGGCTCTAAACCAACATAGC +
Preference number: 3 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFVLNQG*ALNQHS
Trigger: GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAAC...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 72 bp CTTTTAAGTGATTCACTGGGACAAGGGTGTAAACTCTaGACCAGGGTTGTAAACCTGATGACCAAACACCTG +
Preference number: 3 (lower is better)
Translates to: LLSDSLGQGCKL*TRVVNLMTKHL
Trigger: CAGGTGTTTGGTCATCAGGTTTACAACCCTGGTTCAGAGTTTACACCCTTGTCCCAGTGAATCACTTAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 72 bp GCCTTACTGCCAGGGGCCTGTACTTTTATTCTTATGTaGTTGTCTGTCTTTATTCAAATCCTGAGGAGAGCT +
Preference number: 3 (lower is better)
Translates to: ALLPGACTFILM*LSVFIQILRRA
Trigger: AGCTCTCCTCAGGATTTGAATAAAGACAGACAATCACATAAGAATAAAAGTACAGGCCCCTGGCAGTAAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CCA 72 bp TATGTTAGCACAATTGCAGATGGTCCGTTCATTCCCTaGAAAGGTGTCTCTGCTATAAAATGCAATCTCGTC +
Preference number: 3 (lower is better)
Translates to: YVSTIADGPFIP*KGVSAIKCNLV
Trigger: GACGAGATTGCATTTTATAGCAGAGACACCTTTCCAGGGAATGAACGGACCATCTGCAATTGTGCTAACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp GTGCTGTATATCAATGAGAAGCTGAGCACAGATGCAGGCAGAATACTTGTCTGGCTCTACTTGCTTATTTaGAATACTGGCTCAAAACTG +
Preference number: 3 (lower is better)
Translates to: VLYINEKLSTDAGRILVWLYLLI*NTGSKL
Trigger: CAGTTTTGAGCCAGTATTCAAAATAAGCAAGTAGAG...CCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR-3UTR CAA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCCTCTACTTGCTTATTTaGAATACTGGCTCAAAACTG +
Preference number: 3 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFLYLLI*NTGSKL
Trigger: CAGTTTTGAGCCAGTATTCAAAATAAGCAAGTAGAG...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 72 bp TTAATTCAGATCTCAAGAGGGGAAGGGAGGACGTTATaGATCCTTAAGTACAGAATCAATGCTAATCAATGC +
Preference number: 3 (lower is better)
Translates to: LIQISRGEGRTL*ILKYRINANQC
Trigger: GCATTGATTAGCATTGATTCTGTACTTAAGGATTCATAACGTCCTCCCTTCCCCTCTTGAGATCTGAATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
3UTR CCA 72 bp GGAAAAGTTAATCTGGTAAATTCAAGGAAAGCGAAGTaGTTCTGTCACAGTCTTCCTAATGAACAAAACTGT +
Preference number: 3 (lower is better)
Translates to: GKVNLVNSRKAK*FCHSLPNEQNC
Trigger: ACAGTTTTGTTCATTAGGAAGACTGTGACAGAACCACTTCGCTTTCCTTGAATTTACCAGATTAACTTTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR TCA 72 bp CATAACCTTCATCTGCATGAGAGAGAGGATGGTTTCTaGTATTGGTCAAAGGGCAAATATACTATAATTAAT +
Preference number: 3 (lower is better)
Translates to: HNLHLHEREDGF*YWSKGKYTIIN
Trigger: ATTAATTATAGTATATTTGCCCTTTGACCAATATCAGAAACCATCCTCTCTCTCATGCAGATGAAGGTTATG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 72 bp TATCTGCACTGCAGCCAGCATGTCCAAGAGCGCTGCTaGGTGGGTGATGCCCCTCACTGGTCCCAGGAAGGC +
Preference number: 4 (lower is better)
Translates to: YLHCSQHVQERC*VGDAPHWSQEG
Trigger: GCCTTCCTGGGACCAGTGAGGGGCATCACCCACCAAGCAGCGCTCTTGGACATGCTGGCTGCAGTGCAGATA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 72 bp AGCCCCTGCTTTCACGCTAACCTGGGGATGGGATTCTaGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCT +
Preference number: 4 (lower is better)
Translates to: SPCFHANLGMGF*MQGSEPASASS
Trigger: AGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAAGAATCCCATCCCCAGGTTAGCGTGAAAGCAGGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CCA 90 bp CATGTCCTTGTCTGGTCTCATTATCTGCACTGCAGCCAGCATGTCCAAGAGCGCCCTGCCAGAAGCCGCTaGCTATCTCCCCGAAGCTCT +
Preference number: 4 (lower is better)
Translates to: HVLVWSHYLHCSQHVQERPARSR*LSPRSS
Trigger: AGAGCTTCGGGGAGATAGCCAGCGGCTTCTGGCAGG...GCGCTCTTGGACATGCTGGCTGCAGTGCAGATAATGAGACCAGACAAGGACATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 72 bp CTGCACGAACCACAGCTGGTCTGGAGGCTGAAGTCCTaGAAGGCAGAGAACACTGGTTTCCCTGAGCAGCCA +
Preference number: 4 (lower is better)
Translates to: LHEPQLVWRLKS*KAENTGFPEQP
Trigger: TGGCTGCTCAGGGAAACCAGTGTTCTCTGCCTTCAAGGACTTCAGCCTCCAGACCAGCTGTGGTTCGTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR TCA 90 bp TTCTGCCTATGGAAGAAGTCTCCCACAGTCTCAGAAGCCCCCATTCATCCCTTCGCCAGTCGGCGCTCATaGAGGCAACGAGCTCAGCAA +
Preference number: 4 (lower is better)
Translates to: FCLWKKSPTVSEAPIHPFASRRS*RQRAQQ
Trigger: TTGCTGAGCTCGTTGCCTTCATGAGCGCCGACTGGC...GAAGGGATGAATGGGGGCTTCTGAGACTGTGGGAGACTTCTTCCATAGGCAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp GAACCACAGCTGGTCTGGAGGCTGAAGTCCTTGAAGGCAGAGAACACTGGTTTCTGGCAGGGGTACGGATaGAGAGGATGCCCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: EPQLVWRLKSLKAENTGFWQGYG*RGCPGS
Trigger: ACTACCTGGGCATCCTCTGCATCCGTACCCCTGCCA...GAAACCAGTGTTCTCTGCCTTCAAGGACTTCAGCCTCCAGACCAGCTGTGGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 72 bp TCTCCGACAGGACTCCCCAGGGGCTATTCCATGTCCTaGTCTGGTCTCATTATCTGCACTGCAGCCAGCATG +
Preference number: 4 (lower is better)
Translates to: SPTGLPRGYSMS*SGLIICTAASM
Trigger: CATGCTGGCTGCAGTGCAGATAATGAGACCAGACAAGGACATGGAATAGCCCCTGGGGAGTCCTGTCGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR TCA 90 bp ACCGCTAGGGAGGGTCTCTGTCTCTGCATGGTTCTTATGATGCCAGACTCAGGTTTTGCACGCACATGGTaGAGACGGACACCAAGGCCA +
Preference number: 4 (lower is better)
Translates to: TAREGLCLCMVLMMPDSGFARTW*RRTPRP
Trigger: TGGCCTTGGTGTCCGTCTTCACCATGTGCGTGCAAA...ACCTGAGTCTGGCATCATAAGAACCATGCAGAGACAGAGACCCTCCCTAGCGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp AGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGCTGGAGACGCTTCCAGGCCTTTCCTCATGATGCTTTaGACGCACATGGTGAAGACG +
Preference number: 4 (lower is better)
Translates to: SVSKLCGPTPEAGDASRPFLMML*THMVKT
Trigger: CGTCTTCACCATGTGCGTGCAAAGCATCATGAGGAA...AGGCCTGGAAGCGTCTCCAGCTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp ACCGCTAGGGAGGGTCTCTGTCTCTGCATGGTTCTTATGATGCCAGACTCAGGTAAAATAGCGGTAGCCTaGCAGAAGCCGCTGGCTATC +
Preference number: 4 (lower is better)
Translates to: TAREGLCLCMVLMMPDSGKIAVA*QKPLAI
Trigger: GATAGCCAGCGGCTTCTGGCAGGCTACCGCTATTTT...ACCTGAGTCTGGCATCATAAGAACCATGCAGAGACAGAGACCCTCCCTAGCGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp TTGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGGGAGGTTGCAATTTCTaGTTGTGCAGAGAAGACAGC +
Preference number: 4 (lower is better)
Translates to: LMQGSEPASASSVDQHQKGGCNF*LCREDS
Trigger: GCTGTCTTCTCTGCACAAGCAGAAATTGCAACCTCC...CTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR TCA 90 bp GTGCTGTATATCAATGAGAAGCTGAGCACAGATGCAGGCAGAATACTTGTCTGGGCCAGTCGGCGCTCATaGAGGCAACGAGCTCAGCAA +
Preference number: 4 (lower is better)
Translates to: VLYINEKLSTDAGRILVWASRRS*RQRAQQ
Trigger: TTGCTGAGCTCGTTGCCTTCATGAGCGCCGACTGGC...CCAGACAAGTATTCTGCCTGCATCTGTGCTCAGCTTCTCATTGATATACAGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp CATGTCCTTGTCTGGTCTCATTATCTGCACTGCAGCCAGCATGTCCAAGAGCGCTTCCTCATGATGCTTTaGACGCACATGGTGAAGACG +
Preference number: 4 (lower is better)
Translates to: HVLVWSHYLHCSQHVQERFLMML*THMVKT
Trigger: CGTCTTCACCATGTGCGTGCAAAGCATCATGAGGAA...GCGCTCTTGGACATGCTGGCTGCAGTGCAGATAATGAGACCAGACAAGGACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp TTGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGTTTGTCACTGGAGGTTaGAATTTCTGCTTGTGCAGA +
Preference number: 4 (lower is better)
Translates to: LMQGSEPASASSVDQHQKFVTGG*NFCLCR
Trigger: TCTGCACAAGCAGAAATTGCAACCTCCAGTGACAAA...CTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CCA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCCCTGCCAGAAGCCGCTaGCTATCTCCCCGAAGCTCT +
Preference number: 4 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFPARSR*LSPRSS
Trigger: AGAGCTTCGGGGAGATAGCCAGCGGCTTCTGGCAGG...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 72 bp ATTTCACACGGAAGACCAGCACTGACTGGGCCTGGCTaGCTGGATCGACCCTCCCATAAACATAGTGATTGT +
Preference number: 4 (lower is better)
Translates to: ISHGRPALTGPG*LDRPSHKHSDC
Trigger: ACAATCACTATGTTTATGGGAGGGTCGATCCAGCAAGCCAGGCCCAGTCAGTGCTGGTCTTCCGTGTGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
CDS-3UTR TCA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCGCCAGTCGGCGCTCATaGAGGCAACGAGCTCAGCAA +
Preference number: 4 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSASRRS*RQRAQQ
Trigger: TTGCTGAGCTCGTTGCCTTCATGAGCGCCGACTGGC...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CCA 90 bp TTGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGTCTTCAATTTCTTCCTaGACTTTGTCACTGGAGGTT +
Preference number: 4 (lower is better)
Translates to: LMQGSEPASASSVDQHQKSSISS*TLSLEV
Trigger: AACCTCCAGTGACAAAGTCCAGGAAGAAATTGAAGA...CTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 72 bp AGAGAGGTCATGTCTTCATTTATGACTGTTACCAGGTaGCTAGGAGTGCACTGCCCCCTTGACCCCCAAAGA +
Preference number: 4 (lower is better)
Translates to: REVMSSFMTVTR*LGVHCPLDPQR
Trigger: TCTTTGGGGGTCAAGGGGGCAGTGCACTCCTAGCAACCTGGTAACAGTCATAAATGAAGACATGACCTCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 72 bp TCTCGTCCCATCAAGTCAGGATGTAGGCAGTTTTCATaGTGCCCTTTGTGGTGGGGCTGTCTTCTCCAACAT +
Preference number: 4 (lower is better)
Translates to: SRPIKSGCRQFS*CPLWWGCLLQH
Trigger: ATGTTGGAGAAGACAGCCCCACCACAAAGGGCACAATGAAAACTGCCTACATCCTGACTTGATGGGACGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR TCA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCTTTGCACGCACATGGTaGAGACGGACACCAAGGCCA +
Preference number: 4 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFFARTW*RRTPRP
Trigger: TGGCCTTGGTGTCCGTCTTCACCATGTGCGTGCAAA...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCTGGCAGGGGTACGGATaGAGAGGATGCCCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSWQGYG*RGCPGS
Trigger: ACTACCTGGGCATCCTCTGCATCCGTACCCCTGCCA...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp CAGTGTGGCAGAGAGGTCATGTCTTCATTTATGACTGTTACCAGGTTGCTAGGAAAAATAGCGGTAGCCTaGCAGAAGCCGCTGGCTATC +
Preference number: 4 (lower is better)
Translates to: QCGREVMSSFMTVTRLLGKIAVA*QKPLAI
Trigger: GATAGCCAGCGGCTTCTGGCAGGCTACCGCTATTTT...TCCTAGCAACCTGGTAACAGTCATAAATGAAGACATGACCTCTCTGCCACACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 72 bp CAGTCTCAGAAGCCCCCATTCATCCCTTCAGAGTCTTaGCTCTCCGAAACACAAATCCAGGCCACATGTTAT +
Preference number: 4 (lower is better)
Translates to: QSQKPPFIPSES*LSETQIQATCY
Trigger: ATAACATGTGGCCTGGATTTGTGTTTCGGAGAGCAAAGACTCTGAAGGGATGAATGGGGGCTTCTGAGACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054274.8
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp GCTATCTGCCTTACTGCCAGGGGCCTGTACTTTTATTCTTATGTGATTGTCTGTAAAATAGCGGTAGCCTaGCAGAAGCCGCTGGCTATC +
Preference number: 4 (lower is better)
Translates to: AICLTARGLYFYSYVIVCKIAVA*QKPLAI
Trigger: GATAGCCAGCGGCTTCTGGCAGGCTACCGCTATTTT...ACAGACAATCACATAAGAATAAAAGTACAGGCCCCTGGCAGTAAGGCAGATAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CCA 90 bp ACCGCTAGGGAGGGTCTCTGTCTCTGCATGGTTCTTATGATGCCAGACTCAGGTTCTTCAATTTCTTCCTaGACTTTGTCACTGGAGGTT +
Preference number: 4 (lower is better)
Translates to: TAREGLCLCMVLMMPDSGSSISS*TLSLEV
Trigger: AACCTCCAGTGACAAAGTCCAGGAAGAAATTGAAGA...ACCTGAGTCTGGCATCATAAGAACCATGCAGAGACAGAGACCCTCCCTAGCGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp CAGTGTGGCAGAGAGGTCATGTCTTCATTTATGACTGTTACCAGGTTGCTAGGATTCCTCATGATGCTTTaGACGCACATGGTGAAGACG +
Preference number: 4 (lower is better)
Translates to: QCGREVMSSFMTVTRLLGFLMML*THMVKT
Trigger: CGTCTTCACCATGTGCGTGCAAAGCATCATGAGGAA...TCCTAGCAACCTGGTAACAGTCATAAATGAAGACATGACCTCTCTGCCACACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp CAGTGTGGCAGAGAGGTCATGTCTTCATTTATGACTGTTACCAGGTTGCTAGGAGGAGGTTGCAATTTCTaGTTGTGCAGAGAAGACAGC +
Preference number: 4 (lower is better)
Translates to: QCGREVMSSFMTVTRLLGGGCNF*LCREDS
Trigger: GCTGTCTTCTCTGCACAAGCAGAAATTGCAACCTCC...TCCTAGCAACCTGGTAACAGTCATAAATGAAGACATGACCTCTCTGCCACACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 72 bp GAGCCAGGAGAGAAGTTCCATTCTATGTTAGCACAATaGCAGATGGTCCGTTCATTCCCTGGAAAGGTGTCT +
Preference number: 4 (lower is better)
Translates to: EPGEKFHSMLAQ*QMVRSFPGKVS
Trigger: AGACACCTTTCCAGGGAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCGGAGGTTGCAATTTCTaGTTGTGCAGAGAAGACAGC +
Preference number: 4 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFGGCNF*LCREDS
Trigger: GCTGTCTTCTCTGCACAAGCAGAAATTGCAACCTCC...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
3UTR CAA 72 bp GAAGATAGCTCCAGTAGGTCACGACTGGTTCTTCACTaGGTTCAAATGATGAAGACTGTGTCACTAGGCCAT +
Preference number: 4 (lower is better)
Translates to: EDSSSRSRLVLH*VQMMKTVSLGH
Trigger: ATGGCCTAGTGACACAGTCTTCATCATTTGAACCAAGTGAAGAACCAGTCGTGACCTACTGGAGCTATCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp CAGTGTGGCAGAGAGGTCATGTCTTCATTTATGACTGTTACCAGGTTGCTAGGATGCAATTTCTGCTTGTaGAGAGAAGACAGCACAGAT +
Preference number: 4 (lower is better)
Translates to: QCGREVMSSFMTVTRLLGCNFCL*REDSTD
Trigger: ATCTGTGCTGTCTTCTCTGCACAAGCAGAAATTGCA...TCCTAGCAACCTGGTAACAGTCATAAATGAAGACATGACCTCTCTGCCACACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp GCTATCTGCCTTACTGCCAGGGGCCTGTACTTTTATTCTTATGTGATTGTCTGTTGCAATTTCTGCTTGTaGAGAGAAGACAGCACAGAT +
Preference number: 4 (lower is better)
Translates to: AICLTARGLYFYSYVIVCCNFCL*REDSTD
Trigger: ATCTGTGCTGTCTTCTCTGCACAAGCAGAAATTGCA...ACAGACAATCACATAAGAATAAAAGTACAGGCCCCTGGCAGTAAGGCAGATAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCTGCAATTTCTGCTTGTaGAGAGAAGACAGCACAGAT +
Preference number: 4 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFCNFCL*REDSTD
Trigger: ATCTGTGCTGTCTTCTCTGCACAAGCAGAAATTGCA...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR GCA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCTTTGTCACTGGAGGTTaGAATTTCTGCTTGTGCAGA +
Preference number: 4 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSFVTGG*NFCLCR
Trigger: TCTGCACAAGCAGAAATTGCAACCTCCAGTGACAAA...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CCA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCTCTTCAATTTCTTCCTaGACTTTGTCACTGGAGGTT +
Preference number: 4 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFSSISS*TLSLEV
Trigger: AACCTCCAGTGACAAAGTCCAGGAAGAAATTGAAGA...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS GCA 90 bp CCAGGTAGTGGGGCTCCGAGTTCATGCCTGCCTGCTCATCGCCACTaGCGCTGCGGGTCTTGGCTTTCCCGATCAGCCAGTCGGCGCTCA +
Preference number: 5 (lower is better)
Translates to: PGSGAPSSCLPAHRH*RCGSWLSRSASRRS
Trigger: TGAGCGCCGACTGGCTGATCGGGAAAGCCAAGACCCGCAGCGGCAGTGGCGATGAGCAGGCAGGCATGAACTCGGAGCCCCACTACCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS GCA 90 bp GGGTACGGATGCAGAGGATGCCCAGGTAGTGGGGCTCCGAGTTCATaGCTGCCTGCTCATCGCCACTGCCGCTGCGGGTCTTGGCTTTCC +
Preference number: 5 (lower is better)
Translates to: GYGCRGCPGSGAPSS*LPAHRHCRCGSWLS
Trigger: GGAAAGCCAAGACCCGCAGCGGCAGTGGCGATGAGCAGGCAGGCATGAACTCGGAGCCCCACTACCTGGGCATCCTCTGCATCCGTACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS GCA 90 bp ACGGATGCAGAGGATGCCCAGGTAGTGGGGCTCCGAGTTCATGCCTaGCTGCTCATCGCCACTGCCGCTGCGGGTCTTGGCTTTCCCGAT +
Preference number: 5 (lower is better)
Translates to: TDAEDAQVVGLRVHA*LLIATAAAGLGFPD
Trigger: ATCGGGAAAGCCAAGACCCGCAGCGGCAGTGGCGATGAGCAGGCAGGCATGAACTCGGAGCCCCACTACCTGGGCATCCTCTGCATCCGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS CCA 90 bp TCTTGGCGTAGGTCCCGCACAGTGTGTCCCGAGAGACTTGCTGCATaGCAGGGGTACGGATGCAGAGGATGCCCAGGTAGTGGGGCTCCG +
Preference number: 5 (lower is better)
Translates to: SWRRSRTVCPERLAA*QGYGCRGCPGSGAP
Trigger: CGGAGCCCCACTACCTGGGCATCCTCTGCATCCGTACCCCTGCCATGCAGCAAGTCTCTCGGGACACACTGTGCGGGACCTACGCCAAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS TCA 90 bp TGCCGCTGCGGGTCTTGGCTTTCCCGATCAGCCAGTCGGCGCTCATaGAGGCAACGAGCTCAGCAAAGGCCACCACGATACTCAGGAGGG +
Preference number: 5 (lower is better)
Translates to: CRCGSWLSRSASRRS*RQRAQQRPPRYSGG
Trigger: CCCTCCTGAGTATCGTGGTGGCCTTTGCTGAGCTCGTTGCCTTCATGAGCGCCGACTGGCTGATCGGGAAAGCCAAGACCCGCAGCGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS GCA 90 bp TGTCCCGAGAGACTTGCTGCATGGCAGGGGTACGGATGCAGAGGATaGCCAGGTAGTGGGGCTCCGAGTTCATGCCTGCCTGCTCATCGC +
Preference number: 5 (lower is better)
Translates to: CPERLAAWQGYGCRG*PGSGAPSSCLPAHR
Trigger: GCGATGAGCAGGCAGGCATGAACTCGGAGCCCCACTACCTGGGCATCCTCTGCATCCGTACCCCTGCCATGCAGCAAGTCTCTCGGGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS-3UTR CAA 90 bp ACCGCTAGGGAGGGTCTCTGTCTCTGCATGGTTCTTATGATGCCAGACTCAGGTCTGCCGCTGCGGGTCTaGGCTTTCCCGATCAGCCAG +
Preference number: 5 (lower is better)
Translates to: TAREGLCLCMVLMMPDSGLPLRV*AFPISQ
Trigger: CTGGCTGATCGGGAAAGCCAAGACCCGCAGCGGCAG...ACCTGAGTCTGGCATCATAAGAACCATGCAGAGACAGAGACCCTCCCTAGCGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp CATGTCCTTGTCTGGTCTCATTATCTGCACTGCAGCCAGCATGTCCAAGAGCGCCTGCCGCTGCGGGTCTaGGCTTTCCCGATCAGCCAG +
Preference number: 5 (lower is better)
Translates to: HVLVWSHYLHCSQHVQERLPLRV*AFPISQ
Trigger: CTGGCTGATCGGGAAAGCCAAGACCCGCAGCGGCAG...GCGCTCTTGGACATGCTGGCTGCAGTGCAGATAATGAGACCAGACAAGGACATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp TTGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGAGGAGCCCGCAGACGTaGAAAATGCTTTTCCTCATG +
Preference number: 5 (lower is better)
Translates to: LMQGSEPASASSVDQHQKRSPQT*KMLFLM
Trigger: CATGAGGAAAAGCATTTTCAACGTCTGCGGGCTCCT...CTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp TTGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGTTTCCTCATGATGCTTaGCACGCACATGGTGAAGAC +
Preference number: 5 (lower is better)
Translates to: LMQGSEPASASSVDQHQKFPHDA*HAHGED
Trigger: GTCTTCACCATGTGCGTGCAAAGCATCATGAGGAAA...CTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS GCA 90 bp TGTAGGAGCCCGCAGACGTTGAAAATGCTTTTCCTCATGATGCTTTaGACGCACATGGTGAAGACGGACACCAAGGCCACTACGCAGAGA +
Preference number: 5 (lower is better)
Translates to: CRSPQTLKMLFLMML*THMVKTDTKATTQR
Trigger: TCTCTGCGTAGTGGCCTTGGTGTCCGTCTTCACCATGTGCGTGCAAAGCATCATGAGGAAAAGCATTTTCAACGTCTGCGGGCTCCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS-3UTR CAA 90 bp TTTCTGGCTGCTTTGGTCAAATGGGTAACTTATGGAAACGGGATTAAAAGCCCTCTGCCGCTGCGGGTCTaGGCTTTCCCGATCAGCCAG +
Preference number: 5 (lower is better)
Translates to: FLAALVKWVTYGNGIKSPLPLRV*AFPISQ
Trigger: CTGGCTGATCGGGAAAGCCAAGACCCGCAGCGGCAG...AGGGCTTTTAATCCCGTTTCCATAAGTTACCCATTTGACCAAAGCAGCCAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp ACCGCTAGGGAGGGTCTCTGTCTCTGCATGGTTCTTATGATGCCAGACTCAGGTAGGAGCCCGCAGACGTaGAAAATGCTTTTCCTCATG +
Preference number: 5 (lower is better)
Translates to: TAREGLCLCMVLMMPDSGRSPQT*KMLFLM
Trigger: CATGAGGAAAAGCATTTTCAACGTCTGCGGGCTCCT...ACCTGAGTCTGGCATCATAAGAACCATGCAGAGACAGAGACCCTCCCTAGCGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp AGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGCTGGAGACGCTTCCAGGCCTATTTCTTCCTGGACTTaGTCACTGGAGGTTGCAATT +
Preference number: 5 (lower is better)
Translates to: SVSKLCGPTPEAGDASRPISSWT*SLEVAI
Trigger: AATTGCAACCTCCAGTGACAAAGTCCAGGAAGAAAT...AGGCCTGGAAGCGTCTCCAGCTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp CATGTCCTTGTCTGGTCTCATTATCTGCACTGCAGCCAGCATGTCCAAGAGCGCTTTCCTCATGATGCTTaGCACGCACATGGTGAAGAC +
Preference number: 5 (lower is better)
Translates to: HVLVWSHYLHCSQHVQERFPHDA*HAHGED
Trigger: GTCTTCACCATGTGCGTGCAAAGCATCATGAGGAAA...GCGCTCTTGGACATGCTGGCTGCAGTGCAGATAATGAGACCAGACAAGGACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp CATGTCCTTGTCTGGTCTCATTATCTGCACTGCAGCCAGCATGTCCAAGAGCGCGGTTGCAATTTCTGCTaGTGCAGAGAAGACAGCACA +
Preference number: 5 (lower is better)
Translates to: HVLVWSHYLHCSQHVQERGCNFC*CREDST
Trigger: TGTGCTGTCTTCTCTGCACAAGCAGAAATTGCAACC...GCGCTCTTGGACATGCTGGCTGCAGTGCAGATAATGAGACCAGACAAGGACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp GAACCACAGCTGGTCTGGAGGCTGAAGTCCTTGAAGGCAGAGAACACTGGTTTCGGTTGCAATTTCTGCTaGTGCAGAGAAGACAGCACA +
Preference number: 5 (lower is better)
Translates to: EPQLVWRLKSLKAENTGFGCNFC*CREDST
Trigger: TGTGCTGTCTTCTCTGCACAAGCAGAAATTGCAACC...GAAACCAGTGTTCTCTGCCTTCAAGGACTTCAGCCTCCAGACCAGCTGTGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp TTGATGCAGGGCAGTGAGCCAGCGTCAGCAAGCTCTGTGGACCAACACCAGAAGATTTCTTCCTGGACTTaGTCACTGGAGGTTGCAATT +
Preference number: 5 (lower is better)
Translates to: LMQGSEPASASSVDQHQKISSWT*SLEVAI
Trigger: AATTGCAACCTCCAGTGACAAAGTCCAGGAAGAAAT...CTTCTGGTGTTGGTCCACAGAGCTTGCTGACGCTGGCTCACTGCCCTGCATCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS GCA 90 bp CTCTTCAATTTCTTCCTGGACTTTGTCACTGGAGGTTGCAATTTCTaGTTGTGCAGAGAAGACAGCACAGATAAAGGTGAGGACCGTGCC +
Preference number: 5 (lower is better)
Translates to: LFNFFLDFVTGGCNF*LCREDSTDKGEDRA
Trigger: GGCACGGTCCTCACCTTTATCTGTGCTGTCTTCTCTGCACAAGCAGAAATTGCAACCTCCAGTGACAAAGTCCAGGAAGAAATTGAAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp CAGTGTGGCAGAGAGGTCATGTCTTCATTTATGACTGTTACCAGGTTGCTAGGAAGGAGCCCGCAGACGTaGAAAATGCTTTTCCTCATG +
Preference number: 5 (lower is better)
Translates to: QCGREVMSSFMTVTRLLGRSPQT*KMLFLM
Trigger: CATGAGGAAAAGCATTTTCAACGTCTGCGGGCTCCT...TCCTAGCAACCTGGTAACAGTCATAAATGAAGACATGACCTCTCTGCCACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp CAGTGTGGCAGAGAGGTCATGTCTTCATTTATGACTGTTACCAGGTTGCTAGGACTTTGTCACTGGAGGTaGCAATTTCTGCTTGTGCAG +
Preference number: 5 (lower is better)
Translates to: QCGREVMSSFMTVTRLLGLCHWR*QFLLVQ
Trigger: CTGCACAAGCAGAAATTGCAACCTCCAGTGACAAAG...TCCTAGCAACCTGGTAACAGTCATAAATGAAGACATGACCTCTCTGCCACACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp CCAGGAGAGAAGTTCCATTCTATGTTAGCACAATTGCAGATGGTCCGTTCATTCCTTTGTCACTGGAGGTaGCAATTTCTGCTTGTGCAG +
Preference number: 5 (lower is better)
Translates to: PGEKFHSMLAQLQMVRSFLCHWR*QFLLVQ
Trigger: CTGCACAAGCAGAAATTGCAACCTCCAGTGACAAAG...GAATGAACGGACCATCTGCAATTGTGCTAACATAGAATGGAACTTCTCTCCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCGGTTGCAATTTCTGCTaGTGCAGAGAAGACAGCACA +
Preference number: 5 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSGCNFC*CREDST
Trigger: TGTGCTGTCTTCTCTGCACAAGCAGAAATTGCAACC...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS-3UTR CAA 90 bp TCTATATATCAGGGAGTTGTTCTGAACCAAGGCTTGGCTCTAAACCAACATAGCATTTCTTCCTGGACTTaGTCACTGGAGGTTGCAATT +
Preference number: 5 (lower is better)
Translates to: SIYQGVVLNQGLALNQHSISSWT*SLEVAI
Trigger: AATTGCAACCTCCAGTGACAAAGTCCAGGAAGAAAT...GCTATGTTGGTTTAGAGCCAAGCCTTGGTTCAGAACAACTCCCTGATATATAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS GCA 72 bp CCGAGTTCATGCCTGCCTGCTCATCGCCACTGCCGCTaGGGGTCTTGGCTTTCCCGATCAGCCAGTCGGCGC +
Preference number: 6 (lower is better)
Translates to: PSSCLPAHRHCR*GSWLSRSASRR
Trigger: GCGCCGACTGGCTGATCGGGAAAGCCAAGACCCGCAGCGGCAGTGGCGATGAGCAGGCAGGCATGAACTCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS GCA 72 bp GGGGCTCCGAGTTCATGCCTGCCTGCTCATCGCCACTaGCGCTGCGGGTCTTGGCTTTCCCGATCAGCCAGT +
Preference number: 6 (lower is better)
Translates to: GAPSSCLPAHRH*RCGSWLSRSAS
Trigger: ACTGGCTGATCGGGAAAGCCAAGACCCGCAGCGGCAGTGGCGATGAGCAGGCAGGCATGAACTCGGAGCCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS CAA 72 bp ATGCCTGCCTGCTCATCGCCACTGCCGCTGCGGGTCTaGGCTTTCCCGATCAGCCAGTCGGCGCTCATGAAG +
Preference number: 6 (lower is better)
Translates to: MPACSSPLPLRV*AFPISQSALMK
Trigger: CTTCATGAGCGCCGACTGGCTGATCGGGAAAGCCAAGACCCGCAGCGGCAGTGGCGATGAGCAGGCAGGCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS CAA 90 bp TCCGAGTTCATGCCTGCCTGCTCATCGCCACTGCCGCTGCGGGTCTaGGCTTTCCCGATCAGCCAGTCGGCGCTCATGAAGGCAACGAGC +
Preference number: 6 (lower is better)
Translates to: SEFMPACSSPLPLRV*AFPISQSALMKATS
Trigger: GCTCGTTGCCTTCATGAGCGCCGACTGGCTGATCGGGAAAGCCAAGACCCGCAGCGGCAGTGGCGATGAGCAGGCAGGCATGAACTCGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS CAA 90 bp CCCGAAGCTCTTGGCGTAGGTCCCGCACAGTGTGTCCCGAGAGACTaGCTGCATGGCAGGGGTACGGATGCAGAGGATGCCCAGGTAGTG +
Preference number: 6 (lower is better)
Translates to: PEALGVGPAQCVPRD*LHGRGTDAEDAQVV
Trigger: CACTACCTGGGCATCCTCTGCATCCGTACCCCTGCCATGCAGCAAGTCTCTCGGGACACACTGTGCGGGACCTACGCCAAGAGCTTCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS CCA 72 bp CCTGCCAGAAGCCGCTGGCTATCTCCCCGAAGCTCTTaGCGTAGGTCCCGCACAGTGTGTCCCGAGAGACTT +
Preference number: 6 (lower is better)
Translates to: PARSRWLSPRSS*RRSRTVCPERL
Trigger: AAGTCTCTCGGGACACACTGTGCGGGACCTACGCCAAGAGCTTCGGGGAGATAGCCAGCGGCTTCTGGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS GCA 72 bp AGACTTGCTGCATGGCAGGGGTACGGATGCAGAGGATaGCCAGGTAGTGGGGCTCCGAGTTCATGCCTGCCT +
Preference number: 6 (lower is better)
Translates to: RLAAWQGYGCRG*PGSGAPSSCLP
Trigger: AGGCAGGCATGAACTCGGAGCCCCACTACCTGGGCATCCTCTGCATCCGTACCCCTGCCATGCAGCAAGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS GCA 72 bp TGTCCCGAGAGACTTGCTGCATGGCAGGGGTACGGATaGAGAGGATGCCCAGGTAGTGGGGCTCCGAGTTCA +
Preference number: 6 (lower is better)
Translates to: CPERLAAWQGYG*RGCPGSGAPSS
Trigger: TGAACTCGGAGCCCCACTACCTGGGCATCCTCTGCATCCGTACCCCTGCCATGCAGCAAGTCTCTCGGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS CCA 72 bp AGGTCCCGCACAGTGTGTCCCGAGAGACTTGCTGCATaGCAGGGGTACGGATGCAGAGGATGCCCAGGTAGT +
Preference number: 6 (lower is better)
Translates to: RSRTVCPERLAA*QGYGCRGCPGS
Trigger: ACTACCTGGGCATCCTCTGCATCCGTACCCCTGCCATGCAGCAAGTCTCTCGGGACACACTGTGCGGGACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS TCA 72 bp GGGTCTTGGCTTTCCCGATCAGCCAGTCGGCGCTCATaGAGGCAACGAGCTCAGCAAAGGCCACCACGATAC +
Preference number: 6 (lower is better)
Translates to: GSWLSRSASRRS*RQRAQQRPPRY
Trigger: GTATCGTGGTGGCCTTTGCTGAGCTCGTTGCCTTCATGAGCGCCGACTGGCTGATCGGGAAAGCCAAGACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS CAA 72 bp CCCGCAGACGTTGAAAATGCTTTTCCTCATGATGCTTaGCACGCACATGGTGAAGACGGACACCAAGGCCAC +
Preference number: 6 (lower is better)
Translates to: PADVENAFPHDA*HAHGEDGHQGH
Trigger: GTGGCCTTGGTGTCCGTCTTCACCATGTGCGTGCAAAGCATCATGAGGAAAAGCATTTTCAACGTCTGCGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
ENSMUST00000156071.2
ENSMUST00000223423.2
CDS CAA 90 bp AGGATAAGGAACAGACCTGCGATTCCCTGTAGGAGCCCGCAGACGTaGAAAATGCTTTTCCTCATGATGCTTTGCACGCACATGGTGAAG +
Preference number: 6 (lower is better)
Translates to: RIRNRPAIPCRSPQT*KMLFLMMLCTHMVK
Trigger: CTTCACCATGTGCGTGCAAAGCATCATGAGGAAAAGCATTTTCAACGTCTGCGGGCTCCTACAGGGAATCGCAGGTCTGTTCCTTATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS GCA 72 bp TTCTTCCTGGACTTTGTCACTGGAGGTTGCAATTTCTaGTTGTGCAGAGAAGACAGCACAGATAAAGGTGAG +
Preference number: 6 (lower is better)
Translates to: FFLDFVTGGCNF*LCREDSTDKGE
Trigger: CTCACCTTTATCTGTGCTGTCTTCTCTGCACAAGCAGAAATTGCAACCTCCAGTGACAAAGTCCAGGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS CCA 72 bp AGGCAGACGAGGTTTTTCCCCTCTTCAATTTCTTCCTaGACTTTGTCACTGGAGGTTGCAATTTCTGCTTGT +
Preference number: 6 (lower is better)
Translates to: RQTRFFPSSISS*TLSLEVAISAC
Trigger: ACAAGCAGAAATTGCAACCTCCAGTGACAAAGTCCAGGAAGAAATTGAAGAGGGGAAAAACCTCGTCTGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2
CDS GCA 72 bp CTCTTCAATTTCTTCCTGGACTTTGTCACTGGAGGTTaGAATTTCTGCTTGTGCAGAGAAGACAGCACAGAT +
Preference number: 6 (lower is better)
Translates to: LFNFFLDFVTGG*NFCLCREDSTD
Trigger: ATCTGTGCTGTCTTCTCTGCACAAGCAGAAATTGCAACCTCCAGTGACAAAGTCCAGGAAGAAATTGAAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054274.8
ENSMUST00000118195.2
ENSMUST00000121618.2