Pregenerated sensors for LHFPL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041700Ensembl transcript IDs: ENSMUST00000040084.10
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTGTGACTTGGGTGACCAGTAGAAACTTCATTCCCGTGAATGTTTaGATCATTGTGCTGAAAAATTATCTAAAGAGCCATGGACTTGGA | + |
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Preference number: 1 (lower is better) Translates to: SVTWVTSRNFIPVNV*IIVLKNYLKSHGLG Trigger: TCCAAGTCCATGGCTCTTTAGATAATTTTTCAGCACAATGATTCAAACATTCACGGGAATGAAGTTTCTACTGGTCACCCAAGTCACACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| 3UTR-3UTR TCA 90 bp | AAGGAACACTTGCCACTATATTTTGATACCAGTCACCCAGCAAGAGTAGAAAATGAAACTTCATTCCCGTaGATGTTTGAATCATTGTGC | + |
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Preference number: 2 (lower is better) Translates to: KEHLPLYFDTSHPARVENETSFP*MFESLC Trigger: GCACAATGATTCAAACATTCACGGGAATGAAGTTTC...ATTTTCTACTCTTGCTGGGTGACTGGTATCAAAATATAGTGGCAAGTGTTCCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| 3UTR-3UTR CCA 90 bp | CATCACTGGGAGTTCATGTTTATTGAACACCTGACAAATGTTAGACTCAATGAATTATCTAAAGAGCCATaGACTTGGAGTTTTGGGGGA | + |
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Preference number: 2 (lower is better) Translates to: HHWEFMFIEHLTNVRLNELSKEP*TWSFGG Trigger: TCCCCCAAAACTCCAAGTCCATGGCTCTTTAGATAA...TTCATTGAGTCTAACATTTGTCAGGTGTTCAATAAACATGAACTCCCAGTGATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| 3UTR-3UTR TCA 90 bp | ACTTTTCAAGTAAGAATCTTACTTTGCATAAAGGTACTCAGTGTGACTTGGGTGGAACATGGAAATGAGTaGCACATGTTTAAGGAGCAT | + |
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Preference number: 2 (lower is better) Translates to: TFQVRILLCIKVLSVTWVEHGNE*HMFKEH Trigger: ATGCTCCTTAAACATGTGTCACTCATTTCCATGTTC...CACCCAAGTCACACTGAGTACCTTTATGCAAAGTAAGATTCTTACTTGAAAAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| 3UTR-3UTR GCA 90 bp | AAGGAACACTTGCCACTATATTTTGATACCAGTCACCCAGCAAGAGTAGAAAATCCTGAACAGAATCTATaGTTTAAAGTAAGTGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: KEHLPLYFDTSHPARVENPEQNL*FKVSGK Trigger: CTTCCCACTTACTTTAAAGCATAGATTCTGTTCAGG...ATTTTCTACTCTTGCTGGGTGACTGGTATCAAAATATAGTGGCAAGTGTTCCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| 3UTR TCA 72 bp | CATGGACTTGGAGTTTTGGGGGAACATGGAAATGAGTaGCACATGTTTAAGGAGCATGCAAGCATTAGGGTA | + |
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Preference number: 3 (lower is better) Translates to: HGLGVLGEHGNE*HMFKEHASIRV Trigger: TACCCTAATGCTTGCATGCTCCTTAAACATGTGTCACTCATTTCCATGTTCCCCCAAAACTCCAAGTCCATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| 3UTR-3UTR CAA 90 bp | CATCACTGGGAGTTCATGTTTATTGAACACCTGACAAATGTTAGACTCAATGAACATGGACTTGGAGTTTaGGGGGAACATGGAAATGAG | + |
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Preference number: 3 (lower is better) Translates to: HHWEFMFIEHLTNVRLNEHGLGV*GEHGNE Trigger: CTCATTTCCATGTTCCCCCAAAACTCCAAGTCCATG...TTCATTGAGTCTAACATTTGTCAGGTGTTCAATAAACATGAACTCCCAGTGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| 3UTR-3UTR CAA 90 bp | TTTTCAAGTAAGAATCTTACTTTGCATAAAGGTACTCAGTGTGACTTGGGTGACCATTCCCGTGAATGTTaGAATCATTGTGCTGAAAAA | + |
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Preference number: 3 (lower is better) Translates to: FSSKNLTLHKGTQCDLGDHSREC*NHCAEK Trigger: TTTTTCAGCACAATGATTCAAACATTCACGGGAATG...GTCACCCAAGTCACACTGAGTACCTTTATGCAAAGTAAGATTCTTACTTGAAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR GCA 90 bp | AAGGAACACTTGCCACTATATTTTGATACCAGTCACCCAGCAAGAGTAGAAAATCACCTGTCACCACCGTaGACATCTGCCAGGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: KEHLPLYFDTSHPARVENHLSPP*TSARPG Trigger: GCCTGGCCTGGCAGATGTGCACGGTGGTGACAGGTG...ATTTTCTACTCTTGCTGGGTGACTGGTATCAAAATATAGTGGCAAGTGTTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR CCA 90 bp | CCTCATCACTGGGAGTTCATGTTTATTGAACACCTGACAAATGTTAGACTCAATCTGCCAGGCCAGGCTTaGTATGGCGGTGAAGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: PHHWEFMFIEHLTNVRLNLPGQA*YGGEAG Trigger: GCCAGCTTCACCGCCATACCAAGCCTGGCCTGGCAG...ATTGAGTCTAACATTTGTCAGGTGTTCAATAAACATGAACTCCCAGTGATGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR TCA 90 bp | ACTTTTCAAGTAAGAATCTTACTTTGCATAAAGGTACTCAGTGTGACTTGGGTGGGCTTGGTATGGCGGTaGAGCTGGCATAGCGCCCAC | + |
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Preference number: 4 (lower is better) Translates to: TFQVRILLCIKVLSVTWVGLVWR*SWHSAH Trigger: GTGGGCGCTATGCCAGCTTCACCGCCATACCAAGCC...CACCCAAGTCACACTGAGTACCTTTATGCAAAGTAAGATTCTTACTTGAAAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR GCA 90 bp | GAAATGAGTGACACATGTTTAAGGAGCATGCAAGCATTAGGGTATTCGACTAGTCCCTCCTACAAACTGTaGAGCTCCCATGCAACGCCC | + |
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Preference number: 4 (lower is better) Translates to: EMSDTCLRSMQALGYSTSPSYKL*SSHATP Trigger: GGGCGTTGCATGGGAGCTGCACAGTTTGTAGGAGGG...ACTAGTCGAATACCCTAATGCTTGCATGCTCCTTAAACATGTGTCACTCATTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR TCA 90 bp | GGGAACATGGAAATGAGTGACACATGTTTAAGGAGCATGCAAGCATTAGGGTATTGGCTTTCCAAGCTGTaGTCCAAACAGCCAGTAAGG | + |
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Preference number: 4 (lower is better) Translates to: GNMEMSDTCLRSMQALGYWLSKL*SKQPVR Trigger: CCTTACTGGCTGTTTGGATCACAGCTTGGAAAGCCA...ATACCCTAATGCTTGCATGCTCCTTAAACATGTGTCACTCATTTCCATGTTCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR GCA 90 bp | CCTCATCACTGGGAGTTCATGTTTATTGAACACCTGACAAATGTTAGACTCAATACCATGATCAGATTGTaGCCATCTCCCCGCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: PHHWEFMFIEHLTNVRLNTMIRL*PSPRTG Trigger: CCCTGTGCGGGGAGATGGGCACAATCTGATCATGGT...ATTGAGTCTAACATTTGTCAGGTGTTCAATAAACATGAACTCCCAGTGATGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR GCA 90 bp | TTTTCAAGTAAGAATCTTACTTTGCATAAAGGTACTCAGTGTGACTTGGGTGACACCACCGTGCACATCTaGCAGGCCAGGCTTGGTATG | + |
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Preference number: 4 (lower is better) Translates to: FSSKNLTLHKGTQCDLGDTTVHI*QARLGM Trigger: CATACCAAGCCTGGCCTGGCAGATGTGCACGGTGGT...GTCACCCAAGTCACACTGAGTACCTTTATGCAAAGTAAGATTCTTACTTGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR GCA 90 bp | CATCACTGGGAGTTCATGTTTATTGAACACCTGACAAATGTTAGACTCAATGAAAGCAAGAGAGCCAGGTaGAGATCAACATGGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: HHWEFMFIEHLTNVRLNESKRAR*RSTWLQ Trigger: CTGCAGCCATGTTGATCTGCACCTGGCTCTCTTGCT...TTCATTGAGTCTAACATTTGTCAGGTGTTCAATAAACATGAACTCCCAGTGATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR CCA 90 bp | CCTCATCACTGGGAGTTCATGTTTATTGAACACCTGACAAATGTTAGACTCAATCTCCACCAACATAACTaGCTTGGGGTTTCTTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PHHWEFMFIEHLTNVRLNLHQHN*LGVSSS Trigger: GCTGGAAGAAACCCCAAGCCAGTTATGTTGGTGGAG...ATTGAGTCTAACATTTGTCAGGTGTTCAATAAACATGAACTCCCAGTGATGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR TCA 90 bp | CATCACTGGGAGTTCATGTTTATTGAACACCTGACAAATGTTAGACTCAATGAACACATTCTTCCACCATaGTCAGATTGTGCCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: HHWEFMFIEHLTNVRLNEHILPP*SDCAHL Trigger: GAGATGGGCACAATCTGATCATGGTGGAAGAATGTG...TTCATTGAGTCTAACATTTGTCAGGTGTTCAATAAACATGAACTCCCAGTGATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR CCA 90 bp | AAGGAACACTTGCCACTATATTTTGATACCAGTCACCCAGCAAGAGTAGAAAATCTAACTGAAATTGATTaGAGACATTCCCGCATGTTT | + |
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Preference number: 4 (lower is better) Translates to: KEHLPLYFDTSHPARVENLTEID*RHSRMF Trigger: AAACATGCGGGAATGTCTCCAATCAATTTCAGTTAG...ATTTTCTACTCTTGCTGGGTGACTGGTATCAAAATATAGTGGCAAGTGTTCCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| 3UTR CAA 72 bp | TGGTTATTTGGTAACTTTTCAAGTAAGAATCTTACTTaGCATAAAGGTACTCAGTGTGACTTGGGTGACCAG | + |
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Preference number: 4 (lower is better) Translates to: WLFGNFSSKNLT*HKGTQCDLGDQ Trigger: CTGGTCACCCAAGTCACACTGAGTACCTTTATGCAAAGTAAGATTCTTACTTGAAAAGTTACCAAATAACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS CCA 90 bp | GGCATAAGAATTGGTATTTCTCATGATGTTCTCCACCAACATAACTaGCTTGGGGTTTCTTCCAGCAAAGCAAGAGAGCCAGGTGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: GIRIGISHDVLHQHN*LGVSSSKAREPGAD Trigger: ATCTGCACCTGGCTCTCTTGCTTTGCTGGAAGAAACCCCAAGCCAGTTATGTTGGTGGAGAACATCATGAGAAATACCAATTCTTATGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR CAA 90 bp | AAGGAACACTTGCCACTATATTTTGATACCAGTCACCCAGCAAGAGTAGAAAATTCCACCATGATCAGATaGTGCCCATCTCCCCGCACA | + |
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Preference number: 5 (lower is better) Translates to: KEHLPLYFDTSHPARVENSTMIR*CPSPRT Trigger: TGTGCGGGGAGATGGGCACAATCTGATCATGGTGGA...ATTTTCTACTCTTGCTGGGTGACTGGTATCAAAATATAGTGGCAAGTGTTCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS-3UTR CAA 90 bp | TTTTCAAGTAAGAATCTTACTTTGCATAAAGGTACTCAGTGTGACTTGGGTGACACCAACATAACTGGCTaGGGGTTTCTTCCAGCAAAG | + |
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Preference number: 5 (lower is better) Translates to: FSSKNLTLHKGTQCDLGDTNITG*GFLPAK Trigger: CTTTGCTGGAAGAAACCCCAAGCCAGTTATGTTGGT...GTCACCCAAGTCACACTGAGTACCTTTATGCAAAGTAAGATTCTTACTTGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS CCA 72 bp | ACCTGTCACCACCGTGCACATCTGCCAGGCCAGGCTTaGTATGGCGGTGAAGCTGGCATAGCGCCCACATTC | + |
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Preference number: 6 (lower is better) Translates to: TCHHRAHLPGQA*YGGEAGIAPTF Trigger: GAATGTGGGCGCTATGCCAGCTTCACCGCCATACCAAGCCTGGCCTGGCAGATGTGCACGGTGGTGACAGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS GCA 72 bp | ACAGCCTGCGCTTATCAGCAGCCCTCCTACAAACTGTaGAGCTCCCATGCAACGCCCCATCATTCTAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: TACAYQQPSYKL*SSHATPHHSRD Trigger: ATCTCTAGAATGATGGGGCGTTGCATGGGAGCTGCACAGTTTGTAGGAGGGCTGCTGATAAGCGCAGGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS CAA 72 bp | GTATTTCTCATGATGTTCTCCACCAACATAACTGGCTaGGGGTTTCTTCCAGCAAAGCAAGAGAGCCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: VFLMMFSTNITG*GFLPAKQESQV Trigger: CACCTGGCTCTCTTGCTTTGCTGGAAGAAACCCCAAGCCAGTTATGTTGGTGGAGAACATCATGAGAAATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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| CDS CCA 72 bp | ATTGGTATTTCTCATGATGTTCTCCACCAACATAACTaGCTTGGGGTTTCTTCCAGCAAAGCAAGAGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: IGISHDVLHQHN*LGVSSSKAREP Trigger: TGGCTCTCTTGCTTTGCTGGAAGAAACCCCAAGCCAGTTATGTTGGTGGAGAACATCATGAGAAATACCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040084.10 |
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