Pregenerated sensors for LHFP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048332Ensembl transcript IDs: ENSMUST00000059562.14, ENSMUST00000147139.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTCTGGGTTTACAACCACTATTCCACCTTGTGAAAGTCGCTGGATaGTTCGGGCCCTCTGGTCTCCGGTGGTCTGTCCTCTCCTCAGCT | + |
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Preference number: 1 (lower is better) Translates to: VLGLQPLFHLVKVAG*FGPSGLRWSVLSSA Trigger: AGCTGAGGAGAGGACAGACCACCGGAGACCAGAGGGCCCGAAGCATCCAGCGACTTTCACAAGGTGGAATAGTGGTTGTAAACCCAGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR GCA 90 bp | GTACTCATGTGCTTTCAGGCTCAATCCTCATCTACAGGGAATGTCTaGAGGGTACTCATCCTGCTTCCTAAGATAATACTGTTTCTACTA | + |
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Preference number: 1 (lower is better) Translates to: VLMCFQAQSSSTGNV*RVLILLPKIILFLL Trigger: TAGTAGAAACAGTATTATCTTAGGAAGCAGGATGAGTACCCTGCAGACATTCCCTGTAGATGAGGATTGAGCCTGAAAGCACATGAGTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR CCA 90 bp | GCGGGCATAAAGAGTTTATGCAGGATATCAAAAATACTGATAGAGTaGCATATTGGTCCATGGACTAGGCTTAATGTATGCTTAGTGATG | + |
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Preference number: 1 (lower is better) Translates to: AGIKSLCRISKILIE*HIGPWTRLNVCLVM Trigger: CATCACTAAGCATACATTAAGCCTAGTCCATGGACCAATATGCCACTCTATCAGTATTTTTGATATCCTGCATAAACTCTTTATGCCCGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR GCA 90 bp | ATTTGCATAAACACTAAAAGATATGCTGCGGGCATAAAGAGTTTATaGAGGATATCAAAAATACTGATAGAGTGGCATATTGGTCCATGG | + |
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Preference number: 1 (lower is better) Translates to: ICINTKRYAAGIKSL*RISKILIEWHIGPW Trigger: CCATGGACCAATATGCCACTCTATCAGTATTTTTGATATCCTGCATAAACTCTTTATGCCCGCAGCATATCTTTTAGTGTTTATGCAAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGAGCAACAGTACACAGCTGACCCCCTGTGCAGTGGTGTGATGACATATGCGTATGGCATGTGCGTATaGCCTGTGCATATAACATGT | + |
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Preference number: 2 (lower is better) Translates to: QEQQYTADPLCSGVMTYAYGMCV*PVHITC Trigger: ACATGTTATATGCACAGGTCATACGCACATGCCATA...CGCATATGTCATCACACCACTGCACAGGGGGTCAGCTGTGTACTGTTGCTCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR-3UTR GCA 90 bp | AAACAGGAGCAACAGTACACAGCTGACCCCCTGTGCAGTGGTGTGATGACATATTGTGCGTGTGATGTATaGATATGGCATGTGCGTATG | + |
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Preference number: 2 (lower is better) Translates to: KQEQQYTADPLCSGVMTYCACDV*IWHVRM Trigger: CATACGCACATGCCATATGCATACATCACACGCACA...ATATGTCATCACACCACTGCACAGGGGGTCAGCTGTGTACTGTTGCTCCTGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR-3UTR TCA 90 bp | AAACAGGAGCAACAGTACACAGCTGACCCCCTGTGCAGTGGTGTGATGACATATTATGGCATGTGCGTATaGCCTGTGCATATAACATGT | + |
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Preference number: 2 (lower is better) Translates to: KQEQQYTADPLCSGVMTYYGMCV*PVHITC Trigger: ACATGTTATATGCACAGGTCATACGCACATGCCATA...ATATGTCATCACACCACTGCACAGGGGGTCAGCTGTGTACTGTTGCTCCTGTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR-3UTR GCA 90 bp | GTGCGTATGACCTGTGCATATAACATGTGCATGTGGTATGTGAATATGATGTGTGTGCACGTACTCATGTaGTTTCAGGCTCAATCCTCA | + |
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Preference number: 2 (lower is better) Translates to: VRMTCAYNMCMWYVNMMCVHVLM*FQAQSS Trigger: TGAGGATTGAGCCTGAAAGCACATGAGTACGTGCAC...ACACATCATATTCACATACCACATGCACATGTTATATGCACAGGTCATACGCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR-3UTR CCA 90 bp | CGTATGATGTGTGCGTGTGATGTATGCATATGGCATGTGCGTATGACCTGTGCAATTAACGGTACTCTGTaGAATAGAAACAACAATGCC | + |
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Preference number: 2 (lower is better) Translates to: RMMCACDVCIWHVRMTCAINGTL*NRNNNA Trigger: GGCATTGTTGTTTCTATTCCACAGAGTACCGTTAAT...TGCACAGGTCATACGCACATGCCATATGCATACATCACACGCACACATCATACG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR-3UTR TCA 90 bp | GTGCGTATGACCTGTGCATATAACATGTGCATGTGGTATGTGAATATGATGTGTGATTTGCTGGGTATATaGTATACATTAACGGTACTC | + |
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Preference number: 2 (lower is better) Translates to: VRMTCAYNMCMWYVNMMCDLLGI*YTLTVL Trigger: GAGTACCGTTAATGTATATCATATACCCAGCAAATC...ACACATCATATTCACATACCACATGCACATGTTATATGCACAGGTCATACGCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR-3UTR TCA 90 bp | GTGCGTATGACCTGTGCATATAACATGTGCATGTGGTATGTGAATATGATGTGTGAAGGAGAACAAAAATaGGATCCTCGTTTGCATATA | + |
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Preference number: 2 (lower is better) Translates to: VRMTCAYNMCMWYVNMMCEGEQK*DPRLHI Trigger: TATATGCAAACGAGGATCTCATTTTTGTTCTCCTTC...ACACATCATATTCACATACCACATGCACATGTTATATGCACAGGTCATACGCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR-3UTR CCA 90 bp | GTGCGTATGACCTGTGCATATAACATGTGCATGTGGTATGTGAATATGATGTGTATTAACGGTACTCTGTaGAATAGAAACAACAATGCC | + |
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Preference number: 2 (lower is better) Translates to: VRMTCAYNMCMWYVNMMCINGTL*NRNNNA Trigger: GGCATTGTTGTTTCTATTCCACAGAGTACCGTTAAT...ACACATCATATTCACATACCACATGCACATGTTATATGCACAGGTCATACGCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR CCA 72 bp | CCACCTTGTGAAAGTCGCTGGATGCTTCGGGCCCTCTaGTCTCCGGTGGTCTGTCCTCTCCTCAGCTCGTTC | + |
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Preference number: 3 (lower is better) Translates to: PPCESRWMLRAL*SPVVCPLLSSF Trigger: GAACGAGCTGAGGAGAGGACAGACCACCGGAGACCAGAGGGCCCGAAGCATCCAGCGACTTTCACAAGGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR GCA 72 bp | TTACAACCACTATTCCACCTTGTGAAAGTCGCTGGATaGTTCGGGCCCTCTGGTCTCCGGTGGTCTGTCCTC | + |
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Preference number: 3 (lower is better) Translates to: LQPLFHLVKVAG*FGPSGLRWSVL Trigger: GAGGACAGACCACCGGAGACCAGAGGGCCCGAAGCATCCAGCGACTTTCACAAGGTGGAATAGTGGTTGTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR TCA 72 bp | ACACTGTTCTGGGTTTACAACCACTATTCCACCTTGTaGAAGTCGCTGGATGCTTCGGGCCCTCTGGTCTCC | + |
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Preference number: 3 (lower is better) Translates to: TLFWVYNHYSTL*KSLDASGPLVS Trigger: GGAGACCAGAGGGCCCGAAGCATCCAGCGACTTTCACAAGGTGGAATAGTGGTTGTAAACCCAGAACAGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR GCA 72 bp | AAGAAACAGGAGCAACAGTACACAGCTGACCCCCTGTaGAGTGGTGTGATGACATATGCGTATGATGTGTGC | + |
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Preference number: 3 (lower is better) Translates to: KKQEQQYTADPL*SGVMTYAYDVC Trigger: GCACACATCATACGCATATGTCATCACACCACTGCACAGGGGGTCAGCTGTGTACTGTTGCTCCTGTTTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR TCA 72 bp | AGTGGTGTGATGACATATGCGTATGATGTGTGCGTGTaGTGTATGCATATGGCATGTGCGTATGACCTGTGC | + |
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Preference number: 3 (lower is better) Translates to: SGVMTYAYDVCV*CMHMACAYDLC Trigger: GCACAGGTCATACGCACATGCCATATGCATACATCACACGCACACATCATACGCATATGTCATCACACCACT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR GCA 72 bp | TGCTTTCAGGCTCAATCCTCATCTACAGGGAATGTCTaGAGGGTACTCATCCTGCTTCCTAAGATAATACTG | + |
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Preference number: 3 (lower is better) Translates to: CFQAQSSSTGNV*RVLILLPKIIL Trigger: CAGTATTATCTTAGGAAGCAGGATGAGTACCCTGCAGACATTCCCTGTAGATGAGGATTGAGCCTGAAAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR TCA 72 bp | CTCACCTATAGTAGACAAAAGCTGTCCTGTTCTACGTaGGGTTGTTACAGCAGAAGCTACTCAGTTCACTAC | + |
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Preference number: 3 (lower is better) Translates to: LTYSRQKLSCST*GCYSRSYSVHY Trigger: GTAGTGAACTGAGTAGCTTCTGCTGTAACAACCTCACGTAGAACAGGACAGCTTTTGTCTACTATAGGTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR TCA 72 bp | ACTGGAGAAAGCTCTCCTCACTCTCAAATCTGCAACTaGATTCTCACCTATAGTAGACAAAAGCTGTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: TGESSPHSQICN*ILTYSRQKLSC Trigger: ACAGGACAGCTTTTGTCTACTATAGGTGAGAATTCAGTTGCAGATTTGAGAGTGAGGAGAGCTTTCTCCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGGGTATATGATATACATTAACGGTACTCTGTGGAATAGAAACAACAATGCCTTATTCTCCATGCTTTaGACAATGACAATGTCCCCA | + |
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Preference number: 3 (lower is better) Translates to: AGYMIYINGTLWNRNNNALFSML*TMTMSP Trigger: TGGGGACATTGTCATTGTCAAAAGCATGGAGAATAA...GGCATTGTTGTTTCTATTCCACAGAGTACCGTTAATGTATATCATATACCCAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR CCA 72 bp | ATATCAAAAATACTGATAGAGTGGCATATTGGTCCATaGACTAGGCTTAATGTATGCTTAGTGATGATGCTG | + |
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Preference number: 3 (lower is better) Translates to: ISKILIEWHIGP*TRLNVCLVMML Trigger: CAGCATCATCACTAAGCATACATTAAGCCTAGTCCATGGACCAATATGCCACTCTATCAGTATTTTTGATAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR GCA 72 bp | AACACTAAAAGATATGCTGCGGGCATAAAGAGTTTATaGAGGATATCAAAAATACTGATAGAGTGGCATATT | + |
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Preference number: 3 (lower is better) Translates to: NTKRYAAGIKSL*RISKILIEWHI Trigger: AATATGCCACTCTATCAGTATTTTTGATATCCTGCATAAACTCTTTATGCCCGCAGCATATCTTTTAGTGTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR GCA 90 bp | TCGCTGGATGCTTCGGGCCCTCTGGTCTCCGGTGGTCTGTCCTCTCCTCAGCTCACTCGGTGCTGGGGATaGCCTGGAAGGAGGCATAGC | + |
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Preference number: 4 (lower is better) Translates to: SLDASGPLVSGGLSSPQLTRCWG*PGRRHS Trigger: GCTATGCCTCCTTCCAGGGCATCCCCAGCACCGAGT...GAGCTGAGGAGAGGACAGACCACCGGAGACCAGAGGGCCCGAAGCATCCAGCGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR TCA 90 bp | GTGAAAGTCGCTGGATGCTTCGGGCCCTCTGGTCTCCGGTGGTCTGTCCTCTCCAACCCATCAGGGCAGTaGGAGCCACCAGGAGCAACA | + |
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Preference number: 4 (lower is better) Translates to: VKVAGCFGPSGLRWSVLSNPSGQ*EPPGAT Trigger: TGTTGCTCCTGGTGGCTCTCACTGCCCTGATGGGTT...GGAGAGGACAGACCACCGGAGACCAGAGGGCCCGAAGCATCCAGCGACTTTCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR GCA 90 bp | CAGGAGCAACAGTACACAGCTGACCCCCTGTGCAGTGGTGTGATGACATATGCGCAGCCCCTGCCCCGGTaGAGTAGTAGGCCCAGCCGA | + |
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Preference number: 4 (lower is better) Translates to: QEQQYTADPLCSGVMTYAQPLPR*SSRPSR Trigger: TCGGCTGGGCCTACTACTGCACCGGGGCAGGGGCTG...CGCATATGTCATCACACCACTGCACAGGGGGTCAGCTGTGTACTGTTGCTCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR CCA 90 bp | GTCGCTGGATGCTTCGGGCCCTCTGGTCTCCGGTGGTCTGTCCTCTCCTCAGCTACCCCACACAGGAGGTaGCAGCGGAAAGGAAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: VAGCFGPSGLRWSVLSSATPHRR*QRKGRK Trigger: TTTCCTTCCTTTCCGCTGCCACCTCCTGTGTGGGGT...AGCTGAGGAGAGGACAGACCACCGGAGACCAGAGGGCCCGAAGCATCCAGCGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR CCA 90 bp | TGTGAAAGTCGCTGGATGCTTCGGGCCCTCTGGTCTCCGGTGGTCTGTCCTCTCCCCCCAGAGCCAGTATaGCATGAAGAACCCCACACA | + |
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Preference number: 4 (lower is better) Translates to: CESRWMLRALWSPVVCPLPPEPV*HEEPHT Trigger: TGTGTGGGGTTCTTCATGCCATACTGGCTCTGGGGG...GAGAGGACAGACCACCGGAGACCAGAGGGCCCGAAGCATCCAGCGACTTTCACA 59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR CCA 90 bp | GTGAAAGTCGCTGGATGCTTCGGGCCCTCTGGTCTCCGGTGGTCTGTCCTCTCCCAAGGCCTGTCACTATaGTACAGATCCTCCACTCGG | + |
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Preference number: 4 (lower is better) Translates to: VKVAGCFGPSGLRWSVLSQGLSL*YRSSTR Trigger: CCGAGTGGAGGATCTGTACCATAGTGACAGGCCTTG...GGAGAGGACAGACCACCGGAGACCAGAGGGCCCGAAGCATCCAGCGACTTTCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR GCA 90 bp | CAGGAGCAACAGTACACAGCTGACCCCCTGTGCAGTGGTGTGATGACATATGCGAGATCCTCCACTCGGTaGTGGGGATGCCCTGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: QEQQYTADPLCSGVMTYARSSTR*WGCPGR Trigger: CCTTCCAGGGCATCCCCAGCACCGAGTGGAGGATCT...CGCATATGTCATCACACCACTGCACAGGGGGTCAGCTGTGTACTGTTGCTCCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR GCA 90 bp | CGTATGATGTGTGCGTGTGATGTATGCATATGGCATGTGCGTATGACCTGTGCACAGCCCCTGCCCCGGTaGAGTAGTAGGCCCAGCCGA | + |
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Preference number: 4 (lower is better) Translates to: RMMCACDVCIWHVRMTCAQPLPR*SSRPSR Trigger: TCGGCTGGGCCTACTACTGCACCGGGGCAGGGGCTG...TGCACAGGTCATACGCACATGCCATATGCATACATCACACGCACACATCATACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR TCA 90 bp | CAGGAGCAACAGTACACAGCTGACCCCCTGTGCAGTGGTGTGATGACATATGCGAGAGCCAGTATGGCATaGAGAACCCCACACAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: QEQQYTADPLCSGVMTYARASMA*RTPHRR Trigger: CCTCCTGTGTGGGGTTCTTCATGCCATACTGGCTCT...CGCATATGTCATCACACCACTGCACAGGGGGTCAGCTGTGTACTGTTGCTCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR TCA 90 bp | TGTGAAAGTCGCTGGATGCTTCGGGCCCTCTGGTCTCCGGTGGTCTGTCCTCTCCTTTTGCTTCTTGCCTaGGAAGCAAGCCATCCATGT | + |
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Preference number: 4 (lower is better) Translates to: CESRWMLRALWSPVVCPLLLLLA*EASHPC Trigger: ACATGGATGGCTTGCTTCTCAGGCAAGAAGCAAAAG...GAGAGGACAGACCACCGGAGACCAGAGGGCCCGAAGCATCCAGCGACTTTCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR TCA 90 bp | AAACAGGAGCAACAGTACACAGCTGACCCCCTGTGCAGTGGTGTGATGACATATAACCCATCAGGGCAGTaGGAGCCACCAGGAGCAACA | + |
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Preference number: 4 (lower is better) Translates to: KQEQQYTADPLCSGVMTYNPSGQ*EPPGAT Trigger: TGTTGCTCCTGGTGGCTCTCACTGCCCTGATGGGTT...ATATGTCATCACACCACTGCACAGGGGGTCAGCTGTGTACTGTTGCTCCTGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR CCA 90 bp | AAACAGGAGCAACAGTACACAGCTGACCCCCTGTGCAGTGGTGTGATGACATATCCCCCAGAGCCAGTATaGCATGAAGAACCCCACACA | + |
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Preference number: 4 (lower is better) Translates to: KQEQQYTADPLCSGVMTYPPEPV*HEEPHT Trigger: TGTGTGGGGTTCTTCATGCCATACTGGCTCTGGGGG...ATATGTCATCACACCACTGCACAGGGGGTCAGCTGTGTACTGTTGCTCCTGTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR CCA 90 bp | ATATGTGTGCACGTACTCATGTGCTTTCAGGCTCAATCCTCATCTACAGGGAATTCCTCCACTCGGTGCTaGGGATGCCCTGGAAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: ICVHVLMCFQAQSSSTGNSSTRC*GCPGRR Trigger: CCTCCTTCCAGGGCATCCCCAGCACCGAGTGGAGGA...ATTCCCTGTAGATGAGGATTGAGCCTGAAAGCACATGAGTACGTGCACACATAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR GCA 90 bp | GATGTATGCATATGGCATGTGCGTATGACCTGTGCATATAACATGTGCATGTGGACTCGGTGCTGGGGATaGCCTGGAAGGAGGCATAGC | + |
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Preference number: 4 (lower is better) Translates to: DVCIWHVRMTCAYNMCMWTRCWG*PGRRHS Trigger: GCTATGCCTCCTTCCAGGGCATCCCCAGCACCGAGT...CCACATGCACATGTTATATGCACAGGTCATACGCACATGCCATATGCATACATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR CCA 90 bp | CGTATGATGTGTGCGTGTGATGTATGCATATGGCATGTGCGTATGACCTGTGCACAAGGCCTGTCACTATaGTACAGATCCTCCACTCGG | + |
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Preference number: 4 (lower is better) Translates to: RMMCACDVCIWHVRMTCAQGLSL*YRSSTR Trigger: CCGAGTGGAGGATCTGTACCATAGTGACAGGCCTTG...TGCACAGGTCATACGCACATGCCATATGCATACATCACACGCACACATCATACG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR GCA 90 bp | GATGTATGCATATGGCATGTGCGTATGACCTGTGCATATAACATGTGCATGTGGAGCACCTCCGGAAAGTaGCAAAGGATACAGGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: DVCIWHVRMTCAYNMCMWSTSGK*QRIQAC Trigger: GCAAGCCTGTATCCTTTGGCACTTTCCGGAGGTGCT...CCACATGCACATGTTATATGCACAGGTCATACGCACATGCCATATGCATACATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR TCA 90 bp | GTGCGTATGACCTGTGCATATAACATGTGCATGTGGTATGTGAATATGATGTGTAGAGCCAGTATGGCATaGAGAACCCCACACAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: VRMTCAYNMCMWYVNMMCRASMA*RTPHRR Trigger: CCTCCTGTGTGGGGTTCTTCATGCCATACTGGCTCT...ACACATCATATTCACATACCACATGCACATGTTATATGCACAGGTCATACGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR GCA 90 bp | GTGCGTATGACCTGTGCATATAACATGTGCATGTGGTATGTGAATATGATGTGTAGCACCTCCGGAAAGTaGCAAAGGATACAGGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: VRMTCAYNMCMWYVNMMCSTSGK*QRIQAC Trigger: GCAAGCCTGTATCCTTTGGCACTTTCCGGAGGTGCT...ACACATCATATTCACATACCACATGCACATGTTATATGCACAGGTCATACGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR CCA 90 bp | GCTGGGTATATGATATACATTAACGGTACTCTGTGGAATAGAAACAACAATGCCACCCCACACAGGAGGTaGCAGCGGAAAGGAAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: AGYMIYINGTLWNRNNNATPHRR*QRKGRK Trigger: TTTCCTTCCTTTCCGCTGCCACCTCCTGTGTGGGGT...GGCATTGTTGTTTCTATTCCACAGAGTACCGTTAATGTATATCATATACCCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| 3UTR CAA 72 bp | CTGCTTCCTAAGATAATACTGTTTCTACTAGCCCTTTaGACTCCCCTAGTCCTCATCTTTTTGAAGGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: LLPKIILFLLAL*TPLVLIFLKEN Trigger: GTTCTCCTTCAAAAAGATGAGGACTAGGGGAGTCAAAAGGGCTAGTAGAAACAGTATTATCTTAGGAAGCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS GCA 90 bp | CCATCCATGTACACAGCAGCATGGCAGCCGCAGCCCCTGCCCCGGTaGAGTAGTAGGCCCAGCCGATCTCACACTTGCCCAAGTCAAACT | + |
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Preference number: 5 (lower is better) Translates to: PSMYTAAWQPQPLPR*SSRPSRSHTCPSQT Trigger: AGTTTGACTTGGGCAAGTGTGAGATCGGCTGGGCCTACTACTGCACCGGGGCAGGGGCTGCGGCTGCCATGCTGCTGTGTACATGGATGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR CAA 90 bp | GTGAAAGTCGCTGGATGCTTCGGGCCCTCTGGTCTCCGGTGGTCTGTCCTCTCCCAGCCGATCTCACACTaGCCCAAGTCAAACTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: VKVAGCFGPSGLRWSVLSQPISH*PKSNWP Trigger: TGGCCAGTTTGACTTGGGCAAGTGTGAGATCGGCTG...GGAGAGGACAGACCACCGGAGACCAGAGGGCCCGAAGCATCCAGCGACTTTCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS TCA 90 bp | AGGATACAGGCTTGCCTAGCTGAGACCCCCAGAGCCAGTATGGCATaGAGAACCCCACACAGGAGGTGGCAGCGGAAAGGAAGGAAAGCA | + |
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Preference number: 5 (lower is better) Translates to: RIQACLAETPRASMA*RTPHRRWQRKGRKA Trigger: TGCTTTCCTTCCTTTCCGCTGCCACCTCCTGTGTGGGGTTCTTCATGCCATACTGGCTCTGGGGGTCTCAGCTAGGCAAGCCTGTATCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS-3UTR CAA 90 bp | CTTCCTAAGATAATACTGTTTCTACTAGCCCTTTTGACTCCCCTAGTCCTCATCCAGCCGATCTCACACTaGCCCAAGTCAAACTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: LPKIILFLLALLTPLVLIQPISH*PKSNWP Trigger: TGGCCAGTTTGACTTGGGCAAGTGTGAGATCGGCTG...GATGAGGACTAGGGGAGTCAAAAGGGCTAGTAGAAACAGTATTATCTTAGGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS GCA 72 bp | CATCCATGTACACAGCAGCATGGCAGCCGCAGCCCCTaGCCCGGTGCAGTAGTAGGCCCAGCCGATCTCACA | + |
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Preference number: 6 (lower is better) Translates to: HPCTQQHGSRSP*PGAVVGPADLT Trigger: TGTGAGATCGGCTGGGCCTACTACTGCACCGGGGCAGGGGCTGCGGCTGCCATGCTGCTGTGTACATGGATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS CCA 72 bp | CCAGGAGCAACAGGCCGCAGCCAAGGCCTGTCACTATaGTACAGATCCTCCACTCGGTGCTGGGGATGCCCT | + |
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Preference number: 6 (lower is better) Translates to: PGATGRSQGLSL*YRSSTRCWGCP Trigger: AGGGCATCCCCAGCACCGAGTGGAGGATCTGTACCATAGTGACAGGCCTTGGCTGCGGCCTGTTGCTCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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| CDS CCA 72 bp | TGCCTGAGAAGCAAGCCATCCATGTACACAGCAGCATaGCAGCCGCAGCCCCTGCCCCGGTGCAGTAGTAGG | + |
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Preference number: 6 (lower is better) Translates to: CLRSKPSMYTAA*QPQPLPRCSSR Trigger: CCTACTACTGCACCGGGGCAGGGGCTGCGGCTGCCATGCTGCTGTGTACATGGATGGCTTGCTTCTCAGGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059562.14 ENSMUST00000147139.2 |
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