Pregenerated sensors for LGALS9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001123Ensembl transcript IDs: ENSMUST00000073001.5, ENSMUST00000108268.10, ENSMUST00000108269.10
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TGGGGGAAAGTTACTGTGGACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATACAATGGCTCAGACTATaGGCTGACAGCCATGTGCCA | + |
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Preference number: 2 (lower is better) Translates to: WGKVTVDIVGQLEASGMIQWLRL*ADSHVP Trigger: TGGCACATGGCTGTCAGCCCATAGTCTGAGCCATTG...TATCATCCCACTGGCCTCCAACTGACCCACAATGTCCACAGTAACTTTCCCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| 3UTR-3UTR TCA 90 bp | GAAAGTTACTGTGGACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATATCAGGGAACGATCAGAGATCTaGGCAAACCCAGGAGGGTCA | + |
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Preference number: 2 (lower is better) Translates to: ESYCGHCGSVGGQWDDIRERSEI*ANPGGS Trigger: TGACCCTCCTGGGTTTGCTCAGATCTCTGATCGTTC...CCTGATATCATCCCACTGGCCTCCAACTGACCCACAATGTCCACAGTAACTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| 3UTR-3UTR CCA 90 bp | GAAAGTTACTGTGGACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATATCAGGCAATGGCTCAGACTATaGGCTGACAGCCATGTGCCA | + |
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Preference number: 2 (lower is better) Translates to: ESYCGHCGSVGGQWDDIRQWLRL*ADSHVP Trigger: TGGCACATGGCTGTCAGCCCATAGTCTGAGCCATTG...CCTGATATCATCCCACTGGCCTCCAACTGACCCACAATGTCCACAGTAACTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| 3UTR-3UTR CCA 90 bp | TTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATTGTGGTCAGTTGGAGGCCAGTaGGATGATATCAGGGTGGCT | + |
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Preference number: 2 (lower is better) Translates to: FILWILGENGGKLLWTLWSVGGQ*DDIRVA Trigger: AGCCACCCTGATATCATCCCACTGGCCTCCAACTGA...CCACAATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| 3UTR-3UTR CCA 90 bp | ATTTCTTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATTCAGGGTGGCTCTCCTaGAGGGGTGAAAGAAAAGGG | + |
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Preference number: 2 (lower is better) Translates to: ISLFYGYWVRMGESYCGHSGWLS*RGERKG Trigger: CCCTTTTCTTTCACCCCTCCAGGAGAGCCACCCTGA...ATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAAGAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| 3UTR-3UTR CCA 90 bp | TTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATTGTGGGTGGAGGGAGTCAATTaGGAATTTCACCTTCCTGGA | + |
|
Preference number: 2 (lower is better) Translates to: FILWILGENGGKLLWTLWVEGVN*EFHLPG Trigger: TCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCAC...CCACAATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| 3UTR CCA 72 bp | CAGCCATGTGCCACACAGCCTAGAAAACCCCCTTTGTaGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAA | + |
|
Preference number: 3 (lower is better) Translates to: QPCATQPRKPPL*RESIGNFTFLE Trigger: TTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAAGGGGGTTTTCTAGGCTGTGTGGCACATGGCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| 3UTR-3UTR CAA 90 bp | ATTTCTTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATCCTAGAAAACCCCCTTaGTGGAGGGAGTCAATTGGG | + |
|
Preference number: 3 (lower is better) Translates to: ISLFYGYWVRMGESYCGHPRKPP*WRESIG Trigger: CCCAATTGACTCCCTCCACAAAGGGGGTTTTCTAGG...ATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAAGAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| 3UTR-3UTR CAA 90 bp | ATTTCTTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATTGTGGAGGGAGTCAATaGGGAATTTCACCTTCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: ISLFYGYWVRMGESYCGHCGGSQ*GISPSW Trigger: CCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACA...ATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAAGAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| 3UTR-3UTR CAA 90 bp | TATTTCTTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATGTGGAGGGAGTCAATaGGGAATTTCACCTTCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: YFFILWILGENGGKLLWTCGGSQ*GISPSW Trigger: CCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACA...TGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAAGAAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR GCA 90 bp | GGGCAATGGCTCAGACTATGGGCTGACAGCCATGTGCCACACAGCCTAGAAAACACTGTGGAGAAGACATaGTGGACAGGGGCTGCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: GQWLRLWADSHVPHSLENTVEKT*WTGAAE Trigger: CTCTGCAGCCCCTGTCCAGCATGTCTTCTCCACAGT...GTTTTCTAGGCTGTGTGGCACATGGCTGTCAGCCCATAGTCTGAGCCATTGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108269.10 |
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| CDS-3UTR CCA 90 bp | GACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATATCAGGGTGGCTCTCCTGGAAACGGGGGTTCAGGTaGAAAGCAATGTCACCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: DIVGQLEASGMISGWLSWKRGFR*KAMSPP Trigger: TGGAGGTGACATTGCTTTCCACCTGAACCCCCGTTT...CCAGGAGAGCCACCCTGATATCATCCCACTGGCCTCCAACTGACCCACAATGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| 3UTR CAA 72 bp | GAATGGGGGAAAGTTACTGTGGACATTGTGGGTCAGTaGGAGGCCAGTGGGATGATATCAGGGTGGCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: EWGKVTVDIVGQ*EASGMISGWLS Trigger: GGAGAGCCACCCTGATATCATCCCACTGGCCTCCAACTGACCCACAATGTCCACAGTAACTTTCCCCCATTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | AAGATAAGACACAGGCAGAGTGCTCCAGCCCTTATCCCTAGGCCAGAGACCTTGTGTTCACCATCACCTTaGACTCTGACCTCTGCACCA | + |
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Preference number: 4 (lower is better) Translates to: KIRHRQSAPALIPRPETLCSPSP*TLTSAP Trigger: TGGTGCAGAGGTCAGAGTTCAAGGTGATGGTGAACA...CAAGGTCTCTGGCCTAGGGATAAGGGCTGGAGCACTCTGCCTGTGTCTTATCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR GCA 90 bp | GACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATATCAGGGTGGCTCTCCTGGCACCACAAACCTTTGTaGAAAACTCTTGGTAGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: DIVGQLEASGMISGWLSWHHKPL*KTLGSP Trigger: GGGACTACCAAGAGTTTTGCACAAAGGTTTGTGGTG...CCAGGAGAGCCACCCTGATATCATCCCACTGGCCTCCAACTGACCCACAATGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CCA 90 bp | AAGATAAGACACAGGCAGAGTGCTCCAGCCCTTATCCCTAGGCCAGAGACCTTGGAGAGAACTGCACTGTaGAGAAGACATGCTGGACAG | + |
|
Preference number: 4 (lower is better) Translates to: KIRHRQSAPALIPRPETLERTAL*RRHAGQ Trigger: CTGTCCAGCATGTCTTCTCCACAGTGCAGTTCTCTC...CAAGGTCTCTGGCCTAGGGATAAGGGCTGGAGCACTCTGCCTGTGTCTTATCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | AAGATAAGACACAGGCAGAGTGCTCCAGCCCTTATCCCTAGGCCAGAGACCTTGGCTACCTTGAAGCAGTaGCCTTCACATATGATCCAC | + |
|
Preference number: 4 (lower is better) Translates to: KIRHRQSAPALIPRPETLATLKQ*PSHMIH Trigger: GTGGATCATATGTGAAGGTCACTGCTTCAAGGTAGC...CAAGGTCTCTGGCCTAGGGATAAGGGCTGGAGCACTCTGCCTGTGTCTTATCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | GGGCAATGGCTCAGACTATGGGCTGACAGCCATGTGCCACACAGCCTAGAAAACCATTCACAGCTACCTTaGAGCAGTGACCTTCACATA | + |
|
Preference number: 4 (lower is better) Translates to: GQWLRLWADSHVPHSLENHSQLP*SSDLHI Trigger: TATGTGAAGGTCACTGCTTCAAGGTAGCTGTGAATG...GTTTTCTAGGCTGTGTGGCACATGGCTGTCAGCCCATAGTCTGAGCCATTGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR GCA 90 bp | GACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATATCAGGGTGGCTCTCCTGGACGCGGTGTTGGTACTaGACAAAGAATTTCTTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: DIVGQLEASGMISGWLSWTRCWY*TKNFLF Trigger: GAACAAGAAATTCTTTGTGCAGTACCAACACCGCGT...CCAGGAGAGCCACCCTGATATCATCCCACTGGCCTCCAACTGACCCACAATGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CCA 90 bp | GAAAGTTACTGTGGACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATATCAGGGGGTGTAGAAAGGTATaGTATAGGCTGGGGTGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: ESYCGHCGSVGGQWDDIRGCRKV*YRLGWG Trigger: ACCCCACCCCAGCCTATACCATACCTTTCTACACCC...CCTGATATCATCCCACTGGCCTCCAACTGACCCACAATGTCCACAGTAACTTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CCA 90 bp | TGGGGGAAAGTTACTGTGGACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATAAAACGGGGGTTCAGGTaGAAAGCAATGTCACCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: WGKVTVDIVGQLEASGMIKRGFR*KAMSPP Trigger: TGGAGGTGACATTGCTTTCCACCTGAACCCCCGTTT...TATCATCCCACTGGCCTCCAACTGACCCACAATGTCCACAGTAACTTTCCCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | AAGATAAGACACAGGCAGAGTGCTCCAGCCCTTATCCCTAGGCCAGAGACCTTGCATTCACAGCTACCTTaGAGCAGTGACCTTCACATA | + |
|
Preference number: 4 (lower is better) Translates to: KIRHRQSAPALIPRPETLHSQLP*SSDLHI Trigger: TATGTGAAGGTCACTGCTTCAAGGTAGCTGTGAATG...CAAGGTCTCTGGCCTAGGGATAAGGGCTGGAGCACTCTGCCTGTGTCTTATCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR GCA 90 bp | CCTAGAAAACCCCCTTTGTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAAATGCTGGACAGGGGCTaGAGAGTTCTGGAAGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: PRKPPLWRESIGNFTFLEMLDRG*RVLEGD Trigger: ATCACCTTCCAGAACTCTGCAGCCCCTGTCCAGCAT...TTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAAGGGGGTTTTCTAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | AAACCCCCTTTGTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAATTCCTAATATGGATGGTAGTTTaGGCCATGGGTGCCTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: KPPLWRESIGNFTFLEFLIWMVV*AMGAWW Trigger: CCACCAGGCACCCATGGCTCAAACTACCATCCATAT...TAGGAATTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAAGGGGGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | AGAAAACCCCCTTTGTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAATTCGCCCCCAGGAGTTGTTaGTCTGAGTGTTTCGGACAA | + |
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Preference number: 4 (lower is better) Translates to: RKPPLWRESIGNFTFLEFAPRSC*SECFGQ Trigger: TTGTCCGAAACACTCAGATCAACAACTCCTGGGGGC...GAATTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAAGGGGGTTTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CCA 90 bp | AAACCCCCTTTGTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAATTCCTAGGGGCTGCAGAGTTCTaGAAGGTGATAAAGGACAGC | + |
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Preference number: 4 (lower is better) Translates to: KPPLWRESIGNFTFLEFLGAAEF*KVIKDS Trigger: GCTGTCCTTTATCACCTTCCAGAACTCTGCAGCCCC...TAGGAATTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAAGGGGGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | AGAAAACCCCCTTTGTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAATTCTGTTCACCATCACCTTaGACTCTGACCTCTGCACCA | + |
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Preference number: 4 (lower is better) Translates to: RKPPLWRESIGNFTFLEFCSPSP*TLTSAP Trigger: TGGTGCAGAGGTCAGAGTTCAAGGTGATGGTGAACA...GAATTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAAGGGGGTTTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | TTTGTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAATTCCTATAAGTGATGGGAACTGGACTGGCTaGGAGAACTGCACTGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: FVEGVNWEFHLPGIPISDGNWTG*ENCTVE Trigger: CTCCACAGTGCAGTTCTCTCAGCCAGTCCAGTTCCC...ATCACTTATAGGAATTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | CCTAGAAAACCCCCTTTGTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAAGCTACCTTGAAGCAGTaGCCTTCACATATGATCCAC | + |
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Preference number: 4 (lower is better) Translates to: PRKPPLWRESIGNFTFLEATLKQ*PSHMIH Trigger: GTGGATCATATGTGAAGGTCACTGCTTCAAGGTAGC...TTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAAGGGGGTTTTCTAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR GCA 90 bp | GAAAGTTACTGTGGACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATATCAGGCACCACAAACCTTTGTaGAAAACTCTTGGTAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: ESYCGHCGSVGGQWDDIRHHKPL*KTLGSP Trigger: GGGACTACCAAGAGTTTTGCACAAAGGTTTGTGGTG...CCTGATATCATCCCACTGGCCTCCAACTGACCCACAATGTCCACAGTAACTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | GTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAATTCCTATAAGTGATGATGCCCCCAGGAGTTGTTaGTCTGAGTGTTTCGGACAA | + |
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Preference number: 4 (lower is better) Translates to: VEGVNWEFHLPGIPISDDAPRSC*SECFGQ Trigger: TTGTCCGAAACACTCAGATCAACAACTCCTGGGGGC...ATCATCACTTATAGGAATTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR GCA 90 bp | TGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATTGTGGGTCAGTTGGACGCGGTGTTGGTACTaGACAAAGAATTTCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: WILGENGGKLLWTLWVSWTRCWY*TKNFLF Trigger: GAACAAGAAATTCTTTGTGCAGTACCAACACCGCGT...CCAACTGACCCACAATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | TTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATTGTGGATATGGATGGTAGTTTaGGCCATGGGTGCCTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: FILWILGENGGKLLWTLWIWMVV*AMGAWW Trigger: CCACCAGGCACCCATGGCTCAAACTACCATCCATAT...CCACAATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CCA 90 bp | TTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATTGTGGGGGTGTAGAAAGGTATaGTATAGGCTGGGGTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: FILWILGENGGKLLWTLWGCRKV*YRLGWG Trigger: ACCCCACCCCAGCCTATACCATACCTTTCTACACCC...CCACAATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR GCA 90 bp | ATTTCTTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATAGTTTGAGCCATGGGTaGCTGGTGGGCAGGACGAAA | + |
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Preference number: 4 (lower is better) Translates to: ISLFYGYWVRMGESYCGHSLSHG*LVGRTK Trigger: TTTCGTCCTGCCCACCAGGCACCCATGGCTCAAACT...ATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAAGAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | TTTGTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAATTCCTATAAGTGATCAATGTCATTTCCATTaGAGCTGTTCTGAAAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: FVEGVNWEFHLPGIPISDQCHFH*SCSESS Trigger: TGAACTTTCAGAACAGCTTCAATGGAAATGACATTG...ATCACTTATAGGAATTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR TCA 90 bp | TATTTCTTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACACAATGTCATTTCCATTaGAGCTGTTCTGAAAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: YFFILWILGENGGKLLWTQCHFH*SCSESS Trigger: TGAACTTTCAGAACAGCTTCAATGGAAATGACATTG...TGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAAGAAATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS CCA 90 bp | GAGAACTGCACTGTGGAGAAGACATGCTGGACAGGGGCTGCAGACTaGAAGGTGATAAAGGACAGCTTCAAGCAGCCGGAGACAGCGATG | + |
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Preference number: 5 (lower is better) Translates to: ENCTVEKTCWTGAAD*KVIKDSFKQPETAM Trigger: CATCGCTGTCTCCGGCTGCTTGAAGCTGTCCTTTATCACCTTCCAGTCTGCAGCCCCTGTCCAGCATGTCTTCTCCACAGTGCAGTTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073001.5 |
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| CDS-3UTR CAA 90 bp | GACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATATCAGGGTGGCTCTCCTGGCTTTGTGCAAAACTCTaGGTAGTCCCCTGGAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: DIVGQLEASGMISGWLSWLCAKL*VVPWRV Trigger: GACCCTCCAGGGGACTACCAAGAGTTTTGCACAAAG...CCAGGAGAGCCACCCTGATATCATCCCACTGGCCTCCAACTGACCCACAATGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | CTATGGGCTGACAGCCATGTGCCACACAGCCTAGAAAACCCCCTTTGTGGAGGGCATATGGATGGTAGTTaGAGCCATGGGTGCCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: LWADSHVPHSLENPLCGGHMDGS*SHGCLV Trigger: CACCAGGCACCCATGGCTCAAACTACCATCCATATG...CCCTCCACAAAGGGGGTTTTCTAGGCTGTGTGGCACATGGCTGTCAGCCCATAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS GCA 90 bp | TCCAGGGGTGCTGTGAACCATATGGATGGTAGTTTGAGCCATGGGTaGCTGGTGGGCAGGACGAAAGTTCTGAGTTTTCTGTTTGCGCCC | + |
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Preference number: 5 (lower is better) Translates to: SRGAVNHMDGSLSHG*LVGRTKVLSFLFAP Trigger: GGGCGCAAACAGAAAACTCAGAACTTTCGTCCTGCCCACCAGGCACCCATGGCTCAAACTACCATCCATATGGTTCACAGCACCCCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073001.5 ENSMUST00000108269.10 |
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| CDS CCA 90 bp | AACTGCACTGTGGAGAAGACATGCTGGACAGGGGCTGCAGAGTTCTaGAAGGTGATAAAGGACAGCTTCAAGCAGCCGGAGACAGCGATG | + |
|
Preference number: 5 (lower is better) Translates to: NCTVEKTCWTGAAEF*KVIKDSFKQPETAM Trigger: CATCGCTGTCTCCGGCTGCTTGAAGCTGTCCTTTATCACCTTCCAGAACTCTGCAGCCCCTGTCCAGCATGTCTTCTCCACAGTGCAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | GGGCAATGGCTCAGACTATGGGCTGACAGCCATGTGCCACACAGCCTAGAAAACACGGGTAAAGCCCATTaGGAATGGGGGTGTAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: GQWLRLWADSHVPHSLENTGKAH*EWGCRK Trigger: CTTTCTACACCCCCATTCCAAATGGGCTTTACCCGT...GTTTTCTAGGCTGTGTGGCACATGGCTGTCAGCCCATAGTCTGAGCCATTGCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS GCA 90 bp | TCCAGGGGTGCTGTGAACCATATGGATGGTAGTTTGAGCCATGGGTaGCTGGTGGGCAGGACGAAAGTTCTGAGTCTGGAAGGTGATAAA | + |
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Preference number: 5 (lower is better) Translates to: SRGAVNHMDGSLSHG*LVGRTKVLSLEGDK Trigger: TTTATCACCTTCCAGACTCAGAACTTTCGTCCTGCCCACCAGGCACCCATGGCTCAAACTACCATCCATATGGTTCACAGCACCCCTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108268.10 |
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| CDS-3UTR CAA 90 bp | GAAAGTTACTGTGGACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATATCAGGCATATGGATGGTAGTTaGAGCCATGGGTGCCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: ESYCGHCGSVGGQWDDIRHMDGS*SHGCLV Trigger: CACCAGGCACCCATGGCTCAAACTACCATCCATATG...CCTGATATCATCCCACTGGCCTCCAACTGACCCACAATGTCCACAGTAACTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | TGGGGGAAAGTTACTGTGGACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATAACGGGTAAAGCCCATTaGGAATGGGGGTGTAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: WGKVTVDIVGQLEASGMITGKAH*EWGCRK Trigger: CTTTCTACACCCCCATTCCAAATGGGCTTTACCCGT...TATCATCCCACTGGCCTCCAACTGACCCACAATGTCCACAGTAACTTTCCCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | TGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATTGTGGGTCAGTTGGCCTCCACAGCGAAGGTaGATATGGAACCTCGTAGCA | + |
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Preference number: 5 (lower is better) Translates to: WILGENGGKLLWTLWVSWPPQRR*IWNLVA Trigger: TGCTACGAGGTTCCATATCAACCTTCGCTGTGGAGG...CCAACTGACCCACAATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | CCTAGAAAACCCCCTTTGTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAACCTCCACAGCGAAGGTaGATATGGAACCTCGTAGCA | + |
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Preference number: 5 (lower is better) Translates to: PRKPPLWRESIGNFTFLEPPQRR*IWNLVA Trigger: TGCTACGAGGTTCCATATCAACCTTCGCTGTGGAGG...TTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAAGGGGGTTTTCTAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | GGGCAATGGCTCAGACTATGGGCTGACAGCCATGTGCCACACAGCCTAGAAAACTGCACAAAGAATTTCTaGTTCACCATCACCTTGAAC | + |
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Preference number: 5 (lower is better) Translates to: GQWLRLWADSHVPHSLENCTKNF*FTITLN Trigger: GTTCAAGGTGATGGTGAACAAGAAATTCTTTGTGCA...GTTTTCTAGGCTGTGTGGCACATGGCTGTCAGCCCATAGTCTGAGCCATTGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | AAGATAAGACACAGGCAGAGTGCTCCAGCCCTTATCCCTAGGCCAGAGACCTTGTGCACAAAGAATTTCTaGTTCACCATCACCTTGAAC | + |
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Preference number: 5 (lower is better) Translates to: KIRHRQSAPALIPRPETLCTKNF*FTITLN Trigger: GTTCAAGGTGATGGTGAACAAGAAATTCTTTGTGCA...CAAGGTCTCTGGCCTAGGGATAAGGGCTGGAGCACTCTGCCTGTGTCTTATCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | TTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATTGTGGCTTTGTGCAAAACTCTaGGTAGTCCCCTGGAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: FILWILGENGGKLLWTLWLCAKL*VVPWRV Trigger: GACCCTCCAGGGGACTACCAAGAGTTTTGCACAAAG...CCACAATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | TGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACATTGTGGGTCAGTTGGATATTCACACATGTGTaGACCATTCACAGCTACCTT | + |
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Preference number: 5 (lower is better) Translates to: WILGENGGKLLWTLWVSWIFTHV*TIHSYL Trigger: AAGGTAGCTGTGAATGGTCAACACATGTGTGAATAT...CCAACTGACCCACAATGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | GAAAGTTACTGTGGACATTGTGGGTCAGTTGGAGGCCAGTGGGATGATATCAGGATATTCACACATGTGTaGACCATTCACAGCTACCTT | + |
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Preference number: 5 (lower is better) Translates to: ESYCGHCGSVGGQWDDIRIFTHV*TIHSYL Trigger: AAGGTAGCTGTGAATGGTCAACACATGTGTGAATAT...CCTGATATCATCCCACTGGCCTCCAACTGACCCACAATGTCCACAGTAACTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | AAACCCCCTTTGTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAATTCCTAGTTCACCACAAACCTTaGTGCAAAACTCTTGGTAGT | + |
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Preference number: 5 (lower is better) Translates to: KPPLWRESIGNFTFLEFLVHHKP*CKTLGS Trigger: ACTACCAAGAGTTTTGCACAAAGGTTTGTGGTGAAC...TAGGAATTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAAGGGGGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | TTTGTGGAGGGAGTCAATTGGGAATTTCACCTTCCTGGAATTCCTATAAGTGATTTGTTCACCATCACCTaGAACTCTGACCTCTGCACC | + |
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Preference number: 5 (lower is better) Translates to: FVEGVNWEFHLPGIPISDLFTIT*NSDLCT Trigger: GGTGCAGAGGTCAGAGTTCAAGGTGATGGTGAACAA...ATCACTTATAGGAATTCCAGGAAGGTGAAATTCCCAATTGACTCCCTCCACAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS-3UTR CAA 90 bp | TATTTCTTTATTTTATGGATACTGGGTGAGAATGGGGGAAAGTTACTGTGGACAGTTCACCACAAACCTTaGTGCAAAACTCTTGGTAGT | + |
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Preference number: 5 (lower is better) Translates to: YFFILWILGENGGKLLWTVHHKP*CKTLGS Trigger: ACTACCAAGAGTTTTGCACAAAGGTTTGTGGTGAAC...TGTCCACAGTAACTTTCCCCCATTCTCACCCAGTATCCATAAAATAAAGAAATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS TCA 72 bp | TTGCGCCCCTTAGGGGTCCGTGGGAACTGGACTGGCTaGGAGAACTGCACTGTGGAGAAGACATGCTGGACA | + |
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Preference number: 6 (lower is better) Translates to: LRPLGVRGNWTG*ENCTVEKTCWT Trigger: TGTCCAGCATGTCTTCTCCACAGTGCAGTTCTCTCAGCCAGTCCAGTTCCCACGGACCCCTAAGGGGCGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073001.5 ENSMUST00000108269.10 |
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| CDS CCA 72 bp | CTGTTTGCGCCCCTTAGGGGTCCGTGGGAACTGGACTaGCTGAGAGAACTGCACTGTGGAGAAGACATGCTG | + |
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Preference number: 6 (lower is better) Translates to: LFAPLRGPWELD*LRELHCGEDML Trigger: CAGCATGTCTTCTCCACAGTGCAGTTCTCTCAGCCAGTCCAGTTCCCACGGACCCCTAAGGGGCGCAAACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073001.5 ENSMUST00000108269.10 |
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| CDS CCA 72 bp | ACTGTGGAGAAGACATGCTGGACAGGGGCTGCAGACTaGAAGGTGATAAAGGACAGCTTCAAGCAGCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: TVEKTCWTGAAD*KVIKDSFKQPE Trigger: CTCCGGCTGCTTGAAGCTGTCCTTTATCACCTTCCAGTCTGCAGCCCCTGTCCAGCATGTCTTCTCCACAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073001.5 |
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| CDS CCA 72 bp | GTGGAGAAGACATGCTGGACAGGGGCTGCAGAGTTCTaGAAGGTGATAAAGGACAGCTTCAAGCAGCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: VEKTCWTGAAEF*KVIKDSFKQPE Trigger: CTCCGGCTGCTTGAAGCTGTCCTTTATCACCTTCCAGAACTCTGCAGCCCCTGTCCAGCATGTCTTCTCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108269.10 |
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| CDS CAA 72 bp | CTGTCCAGGGGTGCTGTGAACCATATGGATGGTAGTTaGAGCCATGGGTGCCTGGTGGGCAGGACGAAAGTT | + |
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Preference number: 6 (lower is better) Translates to: LSRGAVNHMDGS*SHGCLVGRTKV Trigger: AACTTTCGTCCTGCCCACCAGGCACCCATGGCTCAAACTACCATCCATATGGTTCACAGCACCCCTGGACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000073001.5 ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS CCA 72 bp | GGTCACCTGAAGTCCCTCCTGCAGCCCTCCTTGGATTaGTCCAGTAAAGGGGATGATCGGGTTAATGTATGG | + |
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Preference number: 6 (lower is better) Translates to: GHLKSLLQPSLD*SSKGDDRVNVW Trigger: CCATACATTAACCCGATCATCCCCTTTACTGGACCAATCCAAGGAGGGCTGCAGGAGGGACTTCAGGTGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000073001.5 ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS GCA 72 bp | GAACTGCACTGTGGAGAAGACATGCTGGACAGGGGCTaGAGACTGGAAGGTGATAAAGGACAGCTTCAAGCA | + |
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Preference number: 6 (lower is better) Translates to: ELHCGEDMLDRG*RLEGDKGQLQA Trigger: TGCTTGAAGCTGTCCTTTATCACCTTCCAGTCTGCAGCCCCTGTCCAGCATGTCTTCTCCACAGTGCAGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073001.5 |
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| CDS GCA 72 bp | GCTGTGAACCATATGGATGGTAGTTTGAGCCATGGGTaGCTGGTGGGCAGGACGAAAGTTCTGAGTCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: AVNHMDGSLSHG*LVGRTKVLSLE Trigger: TTCCAGACTCAGAACTTTCGTCCTGCCCACCAGGCACCCATGGCTCAAACTACCATCCATATGGTTCACAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108268.10 |
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| CDS GCA 72 bp | GCTGTGAACCATATGGATGGTAGTTTGAGCCATGGGTaGCTGGTGGGCAGGACGAAAGTTCTGAGTTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: AVNHMDGSLSHG*LVGRTKVLSFL Trigger: CAGAAAACTCAGAACTTTCGTCCTGCCCACCAGGCACCCATGGCTCAAACTACCATCCATATGGTTCACAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073001.5 ENSMUST00000108269.10 |
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| CDS CAA 72 bp | TTCAGGTGGAAAGCAATGTCACCTCCACAGCGAAGGTaGATATGGAACCTCGTAGCATCTGGCAAGACATTG | + |
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Preference number: 6 (lower is better) Translates to: FRWKAMSPPQRR*IWNLVASGKTL Trigger: CAATGTCTTGCCAGATGCTACGAGGTTCCATATCAACCTTCGCTGTGGAGGTGACATTGCTTTCCACCTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000073001.5 ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS GCA 72 bp | ATTGAAGCTGTTCTGAAAGTTCACCACAAACCTTTGTaGAAAACTCTTGGTAGTCCCCTGGAGGGTCACCTG | + |
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Preference number: 6 (lower is better) Translates to: IEAVLKVHHKPL*KTLGSPLEGHL Trigger: CAGGTGACCCTCCAGGGGACTACCAAGAGTTTTGCACAAAGGTTTGTGGTGAACTTTCAGAACAGCTTCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000073001.5 ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS CAA 90 bp | AATGTCATTTCCATTGAAGCTGTTCTGAAAGTTCACCACAAACCTTaGTGCAAAACTCTTGGTAGTCCCCTGGAGGGTCACCTGAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: NVISIEAVLKVHHKP*CKTLGSPLEGHLKS Trigger: GGACTTCAGGTGACCCTCCAGGGGACTACCAAGAGTTTTGCACAAAGGTTTGTGGTGAACTTTCAGAACAGCTTCAATGGAAATGACATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000073001.5 ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS CAA 72 bp | CAAGTTCTTCAGGCGGTGGTAATATTCACACATGTGTaGACCATTCACAGCTACCTTGAAGCAGTGACCTTC | + |
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Preference number: 6 (lower is better) Translates to: QVLQAVVIFTHV*TIHSYLEAVTF Trigger: GAAGGTCACTGCTTCAAGGTAGCTGTGAATGGTCAACACATGTGTGAATATTACCACCGCCTGAAGAACTTG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000073001.5 ENSMUST00000108268.10 ENSMUST00000108269.10 |
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| CDS CAA 90 bp | GATATCCTGCAAGTTCTTCAGGCGGTGGTAATATTCACACATGTGTaGACCATTCACAGCTACCTTGAAGCAGTGACCTTCACATATGAT | + |
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Preference number: 6 (lower is better) Translates to: DILQVLQAVVIFTHV*TIHSYLEAVTFTYD Trigger: ATCATATGTGAAGGTCACTGCTTCAAGGTAGCTGTGAATGGTCAACACATGTGTGAATATTACCACCGCCTGAAGAACTTGCAGGATATC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000073001.5 ENSMUST00000108268.10 ENSMUST00000108269.10 |
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