Pregenerated sensors for LFNG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029570Ensembl transcript IDs: ENSMUST00000031555.3
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGGAGTGGTGCTCAGAGTGTAGTTAGGGACAGACCTGCCACTCCCTaGAGAACACGACTGCCCAGCAGTCTGCAACACGGGTGGGCACGC | + |
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Preference number: 1 (lower is better) Translates to: RSGAQSVVRDRPATP*RTRLPSSLQHGWAR Trigger: GCGTGCCCACCCGTGTTGCAGACTGCTGGGCAGTCGTGTTCTTCAGGGAGTGGCAGGTCTGTCCCTAACTACACTCTGAGCACCACTCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| 3UTR-3UTR TCA 90 bp | CACAATATGTACAGGCACACCCACTATGGGCGACTTTCTCTCTACTTTGGAGAGGCACCCACGGACCCCTaGGTGGAGCCCCAAGGCCTC | + |
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Preference number: 2 (lower is better) Translates to: HNMYRHTHYGRLSLYFGEAPTDP*VEPQGL Trigger: GAGGCCTTGGGGCTCCACTCAGGGGTCCGTGGGTGC...CTCTCCAAAGTAGAGAGAAAGTCGCCCATAGTGGGTGTGCCTGTACATATTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| 3UTR-3UTR CCA 90 bp | AAGGCACTCATTGTCCAGCTTTCCAAAGACCAAGCCTGTCTGGCTTCCACTTTTGGTCCCTGGGCCCTTTaGATACCAGGGGCGCCCAGG | + |
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Preference number: 2 (lower is better) Translates to: KALIVQLSKDQACLASTFGPWAL*IPGAPR Trigger: CCTGGGCGCCCCTGGTATCCAAAGGGCCCAGGGACC...AAAAGTGGAAGCCAGACAGGCTTGGTCTTTGGAAAGCTGGACAATGAGTGCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| 3UTR-3UTR CCA 90 bp | TGCTGCAAAGAGCACCTTTATTCAGAGGAAGGACGTCACCATAGCAACAACACACCACGGACCCCTGAGTaGAGCCCCAAGGCCTCACCC | + |
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Preference number: 2 (lower is better) Translates to: CCKEHLYSEEGRHHSNNTPRTPE*SPKASP Trigger: GGGTGAGGCCTTGGGGCTCCACTCAGGGGTCCGTGG...TGTGTTGTTGCTATGGTGACGTCCTTCCTCTGAATAAAGGTGCTCTTTGCAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| 3UTR-3UTR CCA 90 bp | AAGGCACTCATTGTCCAGCTTTCCAAAGACCAAGCCTGTCTGGCTTCCACTTTTCTGGAGGGCAGGGGGTaGGGGAGCATTGTTCACCAG | + |
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Preference number: 2 (lower is better) Translates to: KALIVQLSKDQACLASTFLEGRG*GSIVHQ Trigger: CTGGTGAACAATGCTCCCCCACCCCCTGCCCTCCAG...AAAAGTGGAAGCCAGACAGGCTTGGTCTTTGGAAAGCTGGACAATGAGTGCCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| 3UTR CAA 90 bp | GGATTCCAGATACTGGAAGGCATAAATACAGTACTAAGGCACTCATaGTCCAGCTTTCCAAAGACCAAGCCTGTCTGGCTTCCACTTTTT | + |
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Preference number: 2 (lower is better) Translates to: GFQILEGINTVLRHS*SSFPKTKPVWLPLF Trigger: AAAAAGTGGAAGCCAGACAGGCTTGGTCTTTGGAAAGCTGGACAATGAGTGCCTTAGTACTGTATTTATGCCTTCCAGTATCTGGAATCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| 3UTR CCA 72 bp | TCGGACACCAAGGCCAGGGCATACAATAAAGGTCCCTaGGCCCTTTGGATACCAGGGGCGCCCAGGGACAGA | + |
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Preference number: 3 (lower is better) Translates to: SDTKARAYNKGP*ALWIPGAPRDR Trigger: TCTGTCCCTGGGCGCCCCTGGTATCCAAAGGGCCCAGGGACCTTTATTGTATGCCCTGGCCTTGGTGTCCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| 3UTR-3UTR CAA 90 bp | AGTACTAAGGCACTCATTGTCCAGCTTTCCAAAGACCAAGCCTGTCTGGCTTCCAGGTCCCTGGGCCCTTaGGATACCAGGGGCGCCCAG | + |
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Preference number: 3 (lower is better) Translates to: STKALIVQLSKDQACLASRSLGP*DTRGAQ Trigger: CTGGGCGCCCCTGGTATCCAAAGGGCCCAGGGACCT...GGAAGCCAGACAGGCTTGGTCTTTGGAAAGCTGGACAATGAGTGCCTTAGTACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| 3UTR-3UTR CAA 90 bp | AATACTGTCACAATATGTACAGGCACACCCACTATGGGCGACTTTCTCTCTACTAGCTCTGAACCCCACTaGGTGTGGGAGACAAAGATA | + |
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Preference number: 3 (lower is better) Translates to: NTVTICTGTPTMGDFLSTSSEPH*VWETKI Trigger: TATCTTTGTCTCCCACACCAAGTGGGGTTCAGAGCT...AGTAGAGAGAAAGTCGCCCATAGTGGGTGTGCCTGTACATATTGTGACAGTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR TCA 90 bp | GAACACGACTGCCCAGCAGTCTGCAACACGGGTGGGCACGCCACACAAACACACAGCCGCCCTGGACCCTaGAGCCGGAGCTCCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: EHDCPAVCNTGGHATQTHSRPGP*SRSSSR Trigger: TCTGGAGGAGCTCCGGCTTCAGGGTCCAGGGCGGCT...GTGTGTTTGTGTGGCGTGCCCACCCGTGTTGCAGACTGCTGGGCAGTCGTGTTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR TCA 90 bp | GAACACGACTGCCCAGCAGTCTGCAACACGGGTGGGCACGCCACACAAACACACGCTCTGCCGTGCTCATaGAGTGTCCTCCACTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: EHDCPAVCNTGGHATQTHALPCS*SVLHWP Trigger: GGGCCAGTGGAGGACACTTCATGAGCACGGCAGAGC...GTGTGTTTGTGTGGCGTGCCCACCCGTGTTGCAGACTGCTGGGCAGTCGTGTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR GCA 90 bp | CCAGGGCATACAATAAAGGTCCCTGGGCCCTTTGGATACCAGGGGCGCCCAGGGTCGGTGGTGGGCACCTaGTGCAGGTTCTCTAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: PGHTIKVPGPFGYQGRPGSVVGT*CRFSRW Trigger: CCACCTAGAGAACCTGCAGCAGGTGCCCACCACCGA...CCCTGGGCGCCCCTGGTATCCAAAGGGCCCAGGGACCTTTATTGTATGCCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | CCAGGGCATACAATAAAGGTCCCTGGGCCCTTTGGATACCAGGGGCGCCCAGGGTGGGCCTGTCCAGGCTaGGCTTGCCGATGTACACGT | + |
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Preference number: 4 (lower is better) Translates to: PGHTIKVPGPFGYQGRPGWACPG*ACRCTR Trigger: ACGTGTACATCGGCAAGCCCAGCCTGGACAGGCCCA...CCCTGGGCGCCCCTGGTATCCAAAGGGCCCAGGGACCTTTATTGTATGCCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR TCA 90 bp | GAACACGACTGCCCAGCAGTCTGCAACACGGGTGGGCACGCCACACAAACACACTCGAGCCGCGCGCGGTaGAACTTTCTGGTGGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: EHDCPAVCNTGGHATQTHSSRAR*NFLVVL Trigger: CAAGACCACCAGAAAGTTTCACCGCGCGCGGCTCGA...GTGTGTTTGTGTGGCGTGCCCACCCGTGTTGCAGACTGCTGGGCAGTCGTGTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR GCA 90 bp | GAACACGACTGCCCAGCAGTCTGCAACACGGGTGGGCACGCCACACAAACACACGTGGTGGGCACCTGCTaGAGGTTCTCTAGGTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: EHDCPAVCNTGGHATQTHVVGTC*RFSRWE Trigger: CTCCCACCTAGAGAACCTGCAGCAGGTGCCCACCAC...GTGTGTTTGTGTGGCGTGCCCACCCGTGTTGCAGACTGCTGGGCAGTCGTGTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | TACAATAAAGGTCCCTGGGCCCTTTGGATACCAGGGGCGCCCAGGGACAGAGTTGATCCACAGCCGCCCTaGACCCTGAAGCCGGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: YNKGPWALWIPGAPRDRVDPQPP*TLKPEL Trigger: GAGCTCCGGCTTCAGGGTCCAGGGCGGCTGTGGATC...AACTCTGTCCCTGGGCGCCCCTGGTATCCAAAGGGCCCAGGGACCTTTATTGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR TCA 90 bp | TCACCCACCCCCACTGCAGAGATCCAAACACAGATCCCACACAACTGCCCTCGGGCAGCGCCCGGAGGTTaGCGTAGTTGTCATCATCCA | + |
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Preference number: 4 (lower is better) Translates to: SPTPTAEIQTQIPHNCPRAAPGG*RSCHHP Trigger: TGGATGATGACAACTACGTCAACCTCCGGGCGCTGC...CCGAGGGCAGTTGTGTGGGATCTGTGTTTGGATCTCTGCAGTGGGGGTGGGTGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR GCA 90 bp | TACAATAAAGGTCCCTGGGCCCTTTGGATACCAGGGGCGCCCAGGGACAGAGTTACTCCACAGCCATCTTaGAGGACAGAGCCTGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: YNKGPWALWIPGAPRDRVTPQPS*RTEPGG Trigger: GCCGCCAGGCTCTGTCCTGCAAGATGGCTGTGGAGT...AACTCTGTCCCTGGGCGCCCCTGGTATCCAAAGGGCCCAGGGACCTTTATTGTA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | TACAATAAAGGTCCCTGGGCCCTTTGGATACCAGGGGCGCCCAGGGACAGAGTTATCCGTTCTGTGGCCTaGATGGGCCTGTCCAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: YNKGPWALWIPGAPRDRVIRSVA*MGLSRL Trigger: CAGCCTGGACAGGCCCATCCAGGCCACAGAACGGAT...AACTCTGTCCCTGGGCGCCCCTGGTATCCAAAGGGCCCAGGGACCTTTATTGTA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | GAACACGACTGCCCAGCAGTCTGCAACACGGGTGGGCACGCCACACAAACACACGGGTACAGGTGGCAATaGACAGAGCGGAACCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: EHDCPAVCNTGGHATQTHGYRWQ*TERNLD Trigger: ATCCAGGTTCCGCTCTGTCCATTGCCACCTGTACCC...GTGTGTTTGTGTGGCGTGCCCACCCGTGTTGCAGACTGCTGGGCAGTCGTGTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | AGAGCCTCGGACACCAAGGCCAGGGCATACAATAAAGGTCCCTGGGCCCTTTGGAACGTCATCTCCTTGTaGCGCGAGATCCAGGTCTCG | + |
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Preference number: 4 (lower is better) Translates to: RASDTKARAYNKGPWALWNVISL*REIQVS Trigger: CGAGACCTGGATCTCGCGCCACAAGGAGATGACGTT...CCAAAGGGCCCAGGGACCTTTATTGTATGCCCTGGCCTTGGTGTCCGAGGCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | CAGAGGAAGGACGTCACCATAGCAACAACACATCAATTCCCTGAGAGCTTTTCCGGGTGTGGGGATAGCTaGCCAGGAGCCGCAGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: QRKDVTIATTHQFPESFSGCGDS*PGAAAA Trigger: CGCTGCTGCGGCTCCTGGCCAGCTATCCCCACACCC...GGAAAAGCTCTCAGGGAATTGATGTGTTGTTGCTATGGTGACGTCCTTCCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | CACAATATGTACAGGCACACCCACTATGGGCGACTTTCTCTCTACTTTGGAGAGAGAGCCTGGCGGCTGTaGGCCGAGGAGCAGTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: HNMYRHTHYGRLSLYFGERAWRL*AEEQLV Trigger: CACCAACTGCTCCTCGGCCCACAGCCGCCAGGCTCT...CTCTCCAAAGTAGAGAGAAAGTCGCCCATAGTGGGTGTGCCTGTACATATTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | AAGGCACTCATTGTCCAGCTTTCCAAAGACCAAGCCTGTCTGGCTTCCACTTTTTTGCAGGACAGAGCCTaGCGGCTGTGGGCCGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: KALIVQLSKDQACLASTFLQDRA*RLWAEE Trigger: CTCCTCGGCCCACAGCCGCCAGGCTCTGTCCTGCAA...AAAAGTGGAAGCCAGACAGGCTTGGTCTTTGGAAAGCTGGACAATGAGTGCCTT 56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR TCA 90 bp | GGATTCCAGATACTGGAAGGCATAAATACAGTACTAAGGCACTCATTGTCCAGCAGAGGCCGCTCCGGATaGGGGGTACACCCAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: GFQILEGINTVLRHSLSSRGRSG*GVHPAE Trigger: CTCTGCTGGGTGTACCCCTCATCCGGAGCGGCCTCT...GCTGGACAATGAGTGCCTTAGTACTGTATTTATGCCTTCCAGTATCTGGAATCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | AGTACTAAGGCACTCATTGTCCAGCTTTCCAAAGACCAAGCCTGTCTGGCTTCCTTCTCTAGGTGGGAGTaGAAGAGGCCGCTCCGGATG | + |
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Preference number: 4 (lower is better) Translates to: STKALIVQLSKDQACLASFSRWE*KRPLRM Trigger: CATCCGGAGCGGCCTCTTCCACTCCCACCTAGAGAA...GGAAGCCAGACAGGCTTGGTCTTTGGAAAGCTGGACAATGAGTGCCTTAGTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR TCA 90 bp | AAGGCACTCATTGTCCAGCTTTCCAAAGACCAAGCCTGTCTGGCTTCCACTTTTGCACCACATTGCCTGTaGGCTTGGCCAGAGCTTCGT | + |
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Preference number: 4 (lower is better) Translates to: KALIVQLSKDQACLASTFAPHCL*AWPELR Trigger: ACGAAGCTCTGGCCAAGCTCACAGGCAATGTGGTGC...AAAAGTGGAAGCCAGACAGGCTTGGTCTTTGGAAAGCTGGACAATGAGTGCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR GCA 90 bp | GCTGCAAAGAGCACCTTTATTCAGAGGAAGGACGTCACCATAGCAACAACACATTGTCCAGGCTGGGCTTaGCGATGTACACGTCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: AAKSTFIQRKDVTIATTHCPGWA*RCTRLG Trigger: CCCAAGACGTGTACATCGGCAAGCCCAGCCTGGACA...ATGTGTTGTTGCTATGGTGACGTCCTTCCTCTGAATAAAGGTGCTCTTTGCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | TGCTGCAAAGAGCACCTTTATTCAGAGGAAGGACGTCACCATAGCAACAACACACATGAAGCTCGGTGGTaGGCACCTGCTGCAGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: CCKEHLYSEEGRHHSNNTHEARW*APAAGS Trigger: AGAACCTGCAGCAGGTGCCCACCACCGAGCTTCATG...TGTGTTGTTGCTATGGTGACGTCCTTCCTCTGAATAAAGGTGCTCTTTGCAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | GGATTCCAGATACTGGAAGGCATAAATACAGTACTAAGGCACTCATTGTCCAGCGCTCATGAAGCTCGGTaGTGGGCACCTGCTGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: GFQILEGINTVLRHSLSSAHEAR*WAPAAG Trigger: ACCTGCAGCAGGTGCCCACCACCGAGCTTCATGAGC...GCTGGACAATGAGTGCCTTAGTACTGTATTTATGCCTTCCAGTATCTGGAATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR GCA 90 bp | AGTACTAAGGCACTCATTGTCCAGCTTTCCAAAGACCAAGCCTGTCTGGCTTCCAATGGTCCCTTGATGTaGACTGCGTTCCGCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: STKALIVQLSKDQACLASNGPLM*TAFRLF Trigger: GAACAAGCGGAACGCAGTGCACATCAAGGGACCATT...GGAAGCCAGACAGGCTTGGTCTTTGGAAAGCTGGACAATGAGTGCCTTAGTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | CAGAGGAAGGACGTCACCATAGCAACAACACATCAATTCCCTGAGAGCTTTTCCAGAGCGGAACCTGGATaGGTCAGCTTCCACAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: QRKDVTIATTHQFPESFSRAEPG*VSFHRE Trigger: TTCTCTGTGGAAGCTGACCCATCCAGGTTCCGCTCT...GGAAAAGCTCTCAGGGAATTGATGTGTTGTTGCTATGGTGACGTCCTTCCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | GGATTCCAGATACTGGAAGGCATAAATACAGTACTAAGGCACTCATTGTCCAGCACACCAGGGTGTGTCTaGGTACAGGTGGCAATGGAC | + |
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Preference number: 4 (lower is better) Translates to: GFQILEGINTVLRHSLSSTPGCV*VQVAMD Trigger: GTCCATTGCCACCTGTACCCAGACACACCCTGGTGT...GCTGGACAATGAGTGCCTTAGTACTGTATTTATGCCTTCCAGTATCTGGAATCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| 3UTR CAA 72 bp | TGGAGAGGAGATAAAATTCATAGCTCTGAACCCCACTaGGTGTGGGAGACAAAGATAGGGCATCAGAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: WRGDKIHSSEPH*VWETKIGHQRV Trigger: CACCCTCTGATGCCCTATCTTTGTCTCCCACACCAAGTGGGGTTCAGAGCTATGAATTTTATCTCCTCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | TGCTGCAAAGAGCACCTTTATTCAGAGGAAGGACGTCACCATAGCAACAACACAAGCTTCCACAGAGAATaGTCCCTTGATGTGCACTGC | + |
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Preference number: 4 (lower is better) Translates to: CCKEHLYSEEGRHHSNNTSFHRE*SLDVHC Trigger: GCAGTGCACATCAAGGGACCATTCTCTGTGGAAGCT...TGTGTTGTTGCTATGGTGACGTCCTTCCTCTGAATAAAGGTGCTCTTTGCAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR GCA 90 bp | GGATTCCAGATACTGGAAGGCATAAATACAGTACTAAGGCACTCATTGTCCAGCTCCCTTGATGTGCACTaGGTTCCGCTTGTTCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: GFQILEGINTVLRHSLSSSLDVH*VPLVLK Trigger: TTTGAGAACAAGCGGAACGCAGTGCACATCAAGGGA...GCTGGACAATGAGTGCCTTAGTACTGTATTTATGCCTTCCAGTATCTGGAATCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | GGATTCCAGATACTGGAAGGCATAAATACAGTACTAAGGCACTCATTGTCCAGCGTGGCAAACCAAAAGTaGACAGGTCTCACTTTGTGC | + |
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Preference number: 4 (lower is better) Translates to: GFQILEGINTVLRHSLSSVANQK*TGLTLC Trigger: GCACAAAGTGAGACCTGTCCACTTTTGGTTTGCCAC...GCTGGACAATGAGTGCCTTAGTACTGTATTTATGCCTTCCAGTATCTGGAATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CCA 90 bp | AGGATTCCAGATACTGGAAGGCATAAATACAGTACTAAGGCACTCATTGTCCAGTTGTCATCATCCACGTaGCAGAACCACTTCTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: RIPDTGRHKYSTKALIVQLSSST*QNHFFP Trigger: TGGGAAGAAGTGGTTCTGCCACGTGGATGATGACAA...CTGGACAATGAGTGCCTTAGTACTGTATTTATGCCTTCCAGTATCTGGAATCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| 3UTR CAA 72 bp | ATACTGGAAGGCATAAATACAGTACTAAGGCACTCATaGTCCAGCTTTCCAAAGACCAAGCCTGTCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: ILEGINTVLRHS*SSFPKTKPVWL Trigger: AAGCCAGACAGGCTTGGTCTTTGGAAAGCTGGACAATGAGTGCCTTAGTACTGTATTTATGCCTTCCAGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS CCA 90 bp | GCTACGCAGCGCGCGCCGTCCGCGCTCAGCGGGCATCGGAGTCGGTaGCGGGTCGGCCGTGAGCACCAGGAGACAAGCCAACAGCGCGCC | + |
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Preference number: 5 (lower is better) Translates to: ATQRAPSALSGHRSR*RVGREHQETSQQRA Trigger: GGCGCGCTGTTGGCTTGTCTCCTGGTGCTCACGGCCGACCCGCCACCGACTCCGATGCCCGCTGAGCGCGGACGGCGCGCGCTGCGTAGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS TCA 90 bp | GCCGTCCGCGCTCAGCGGGCATCGGAGTCGGTGGCGGGTCGGCCGTaGGCACCAGGAGACAAGCCAACAGCGCGCCCACCAGCGCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: AVRAQRASESVAGRP*APGDKPTARPPAPA Trigger: TGCTGGCGCTGGTGGGCGCGCTGTTGGCTTGTCTCCTGGTGCTCACGGCCGACCCGCCACCGACTCCGATGCCCGCTGAGCGCGGACGGC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS TCA 90 bp | CACCTCGCGGGTGAGGACTCCGGGATCCACAGCCGCCCTGGACCCTaGAGCCGGAGCTCCTCCAGAGGAGCCCGCCAGGCTACGCAGCGC | + |
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Preference number: 5 (lower is better) Translates to: HLAGEDSGIHSRPGP*SRSSSRGARQATQR Trigger: GCGCTGCGTAGCCTGGCGGGCTCCTCTGGAGGAGCTCCGGCTTCAGGGTCCAGGGCGGCTGTGGATCCCGGAGTCCTCACCCGCGAGGTG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS GCA 90 bp | TCTCTGCGCGCGCGGGTGAGTAGACTGAAGTACTCGGAGAGGCTATaGACCTCGCGGGTGAGGACTCCGGGATCCACAGCCGCCCTGGAC | + |
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Preference number: 5 (lower is better) Translates to: SLRARVSRLKYSERL*TSRVRTPGSTAALD Trigger: GTCCAGGGCGGCTGTGGATCCCGGAGTCCTCACCCGCGAGGTGCATAGCCTCTCCGAGTACTTCAGTCTACTCACCCGCGCGCGCAGAGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS TCA 90 bp | CTCCGGTGGCAAACCAAAAGTGGACAGGTCTCACTTTGTGCTCGCTaGTCCGTTCTGTGGCCTGGATGGGCCTGTCCAGGCTGGGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: LRWQTKSGQVSLCAR*SVLWPGWACPGWAC Trigger: GCAAGCCCAGCCTGGACAGGCCCATCCAGGCCACAGAACGGATCAGCGAGCACAAAGTGAGACCTGTCCACTTTTGGTTTGCCACCGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CAA 90 bp | TCACCCACCCCCACTGCAGAGATCCAAACACAGATCCCACACAACTGCCCTCGGATGAACGTCATCTCCTaGTGGCGCGAGATCCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: SPTPTAEIQTQIPHNCPRMNVIS*WREIQV Trigger: GACCTGGATCTCGCGCCACAAGGAGATGACGTTCAT...CCGAGGGCAGTTGTGTGGGATCTGTGTTTGGATCTCTGCAGTGGGGGTGGGTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS CCA 90 bp | GGGTGTGTCTGGGTACAGGTGGCAATGGACAGAGCGGAACCTGGATaGGTCAGCTTCCACAGAGAATGGTCCCTTGATGTGCACTGCGTT | + |
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Preference number: 5 (lower is better) Translates to: GCVWVQVAMDRAEPG*VSFHREWSLDVHCV Trigger: AACGCAGTGCACATCAAGGGACCATTCTCTGTGGAAGCTGACCCATCCAGGTTCCGCTCTGTCCATTGCCACCTGTACCCAGACACACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS GCA 90 bp | CCTGGATGGGTCAGCTTCCACAGAGAATGGTCCCTTGATGTGCACTaGGTTCCGCTTGTTCTCAAACATGCCATAGCTCAGGGTCACCTG | + |
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Preference number: 5 (lower is better) Translates to: PGWVSFHREWSLDVH*VPLVLKHAIAQGHL Trigger: CAGGTGACCCTGAGCTATGGCATGTTTGAGAACAAGCGGAACGCAGTGCACATCAAGGGACCATTCTCTGTGGAAGCTGACCCATCCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS CCA 90 bp | GCAATGGACAGAGCGGAACCTGGATGGGTCAGCTTCCACAGAGAATaGTCCCTTGATGTGCACTGCGTTCCGCTTGTTCTCAAACATGCC | + |
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Preference number: 5 (lower is better) Translates to: AMDRAEPGWVSFHRE*SLDVHCVPLVLKHA Trigger: GGCATGTTTGAGAACAAGCGGAACGCAGTGCACATCAAGGGACCATTCTCTGTGGAAGCTGACCCATCCAGGTTCCGCTCTGTCCATTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CAA 90 bp | AGTACTAAGGCACTCATTGTCCAGCTTTCCAAAGACCAAGCCTGTCTGGCTTCCGCCGATGTACACGTCTaGGGTGTGGGGATAGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: STKALIVQLSKDQACLASADVHV*GVGIAG Trigger: GCCAGCTATCCCCACACCCAAGACGTGTACATCGGC...GGAAGCCAGACAGGCTTGGTCTTTGGAAAGCTGGACAATGAGTGCCTTAGTACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS TCA 90 bp | CAGAGCGGAACCTGGATGGGTCAGCTTCCACAGAGAATGGTCCCTTaGTGTGCACTGCGTTCCGCTTGTTCTCAAACATGCCATAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: QSGTWMGQLPQRMVP*CALRSACSQTCHSS Trigger: TGAGCTATGGCATGTTTGAGAACAAGCGGAACGCAGTGCACATCAAGGGACCATTCTCTGTGGAAGCTGACCCATCCAGGTTCCGCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CAA 90 bp | AATACTGTCACAATATGTACAGGCACACCCACTATGGGCGACTTTCTCTCTACTCTGTCCAGGCTGGGCTaGCCGATGTACACGTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: NTVTICTGTPTMGDFLSTLSRLG*PMYTSW Trigger: CCAAGACGTGTACATCGGCAAGCCCAGCCTGGACAG...AGTAGAGAGAAAGTCGCCCATAGTGGGTGTGCCTGTACATATTGTGACAGTATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CAA 90 bp | GCTGCAAAGAGCACCTTTATTCAGAGGAAGGACGTCACCATAGCAACAACACATTTGGTGAGCACCACATaGCCTGTGAGCTTGGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: AAKSTFIQRKDVTIATTHLVSTT*PVSLAR Trigger: TCTGGCCAAGCTCACAGGCAATGTGGTGCTCACCAA...ATGTGTTGTTGCTATGGTGACGTCCTTCCTCTGAATAAAGGTGCTCTTTGCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CAA 90 bp | AGGATTCCAGATACTGGAAGGCATAAATACAGTACTAAGGCACTCATTGTCCAGTACTCCACAGCCATCTaGCAGGACAGAGCCTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: RIPDTGRHKYSTKALIVQYSTAI*QDRAWR Trigger: CCGCCAGGCTCTGTCCTGCAAGATGGCTGTGGAGTA...CTGGACAATGAGTGCCTTAGTACTGTATTTATGCCTTCCAGTATCTGGAATCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS-3UTR CAA 90 bp | AGGATTCCAGATACTGGAAGGCATAAATACAGTACTAAGGCACTCATTGTCCAGACATTGCCTGTGAGCTaGGCCAGAGCTTCGTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: RIPDTGRHKYSTKALIVQTLPVS*ARASSS Trigger: GGAGGACGAAGCTCTGGCCAAGCTCACAGGCAATGT...CTGGACAATGAGTGCCTTAGTACTGTATTTATGCCTTCCAGTATCTGGAATCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS CCA 72 bp | CGCGCGCCGTCCGCGCTCAGCGGGCATCGGAGTCGGTaGCGGGTCGGCCGTGAGCACCAGGAGACAAGCCAA | + |
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Preference number: 6 (lower is better) Translates to: RAPSALSGHRSR*RVGREHQETSQ Trigger: TTGGCTTGTCTCCTGGTGCTCACGGCCGACCCGCCACCGACTCCGATGCCCGCTGAGCGCGGACGGCGCGCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS TCA 72 bp | GCTCAGCGGGCATCGGAGTCGGTGGCGGGTCGGCCGTaGGCACCAGGAGACAAGCCAACAGCGCGCCCACCA | + |
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Preference number: 6 (lower is better) Translates to: AQRASESVAGRP*APGDKPTARPP Trigger: TGGTGGGCGCGCTGTTGGCTTGTCTCCTGGTGCTCACGGCCGACCCGCCACCGACTCCGATGCCCGCTGAGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS TCA 72 bp | GGTGAGGACTCCGGGATCCACAGCCGCCCTGGACCCTaGAGCCGGAGCTCCTCCAGAGGAGCCCGCCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: GEDSGIHSRPGP*SRSSSRGARQA Trigger: AGCCTGGCGGGCTCCTCTGGAGGAGCTCCGGCTTCAGGGTCCAGGGCGGCTGTGGATCCCGGAGTCCTCACC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS CAA 72 bp | GGGCCTGTCCAGGCTGGGCTTGCCGATGTACACGTCTaGGGTGTGGGGATAGCTGGCCAGGAGCCGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: GPVQAGLADVHV*GVGIAGQEPQQ Trigger: CTGCTGCGGCTCCTGGCCAGCTATCCCCACACCCAAGACGTGTACATCGGCAAGCCCAGCCTGGACAGGCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS CCA 72 bp | TGCCATAGCTCAGGGTCACCTGCTCATGAAGCTCGGTaGTGGGCACCTGCTGCAGGTTCTCTAGGTGGGAGT | + |
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Preference number: 6 (lower is better) Translates to: CHSSGSPAHEAR*WAPAAGSLGGS Trigger: ACTCCCACCTAGAGAACCTGCAGCAGGTGCCCACCACCGAGCTTCATGAGCAGGTGACCCTGAGCTATGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS CAA 90 bp | CTGTGGGCCGAGGAGCAGTTGGTGAGCACCACATTGCCTGTGAGCTaGGCCAGAGCTTCGTCCTCCCCATCAGTGAAGATGAACGTCATC | + |
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Preference number: 6 (lower is better) Translates to: LWAEEQLVSTTLPVS*ARASSSPSVKMNVI Trigger: GATGACGTTCATCTTCACTGATGGGGAGGACGAAGCTCTGGCCAAGCTCACAGGCAATGTGGTGCTCACCAACTGCTCCTCGGCCCACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS GCA 72 bp | CCGGTGGCAAACCAAAAGTGGACAGGTCTCACTTTGTaGTCGCTGATCCGTTCTGTGGCCTGGATGGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: PVANQKWTGLTL*SLIRSVAWMGL Trigger: CAGGCCCATCCAGGCCACAGAACGGATCAGCGAGCACAAAGTGAGACCTGTCCACTTTTGGTTTGCCACCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS TCA 72 bp | CAAACCAAAAGTGGACAGGTCTCACTTTGTGCTCGCTaGTCCGTTCTGTGGCCTGGATGGGCCTGTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: QTKSGQVSLCAR*SVLWPGWACPG Trigger: GCCTGGACAGGCCCATCCAGGCCACAGAACGGATCAGCGAGCACAAAGTGAGACCTGTCCACTTTTGGTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS CAA 72 bp | GAGGAGCAGTTGGTGAGCACCACATTGCCTGTGAGCTaGGCCAGAGCTTCGTCCTCCCCATCAGTGAAGATG | + |
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Preference number: 6 (lower is better) Translates to: EEQLVSTTLPVS*ARASSSPSVKM Trigger: CATCTTCACTGATGGGGAGGACGAAGCTCTGGCCAAGCTCACAGGCAATGTGGTGCTCACCAACTGCTCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS CCA 72 bp | AGAGCGGAACCTGGATGGGTCAGCTTCCACAGAGAATaGTCCCTTGATGTGCACTGCGTTCCGCTTGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: RAEPGWVSFHRE*SLDVHCVPLVL Trigger: GAGAACAAGCGGAACGCAGTGCACATCAAGGGACCATTCTCTGTGGAAGCTGACCCATCCAGGTTCCGCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS TCA 72 bp | ACCTGGATGGGTCAGCTTCCACAGAGAATGGTCCCTTaGTGTGCACTGCGTTCCGCTTGTTCTCAAACATGC | + |
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Preference number: 6 (lower is better) Translates to: TWMGQLPQRMVP*CALRSACSQTC Trigger: GCATGTTTGAGAACAAGCGGAACGCAGTGCACATCAAGGGACCATTCTCTGTGGAAGCTGACCCATCCAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS GCA 72 bp | GTCAGCTTCCACAGAGAATGGTCCCTTGATGTGCACTaGGTTCCGCTTGTTCTCAAACATGCCATAGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: VSFHREWSLDVH*VPLVLKHAIAQ Trigger: CTGAGCTATGGCATGTTTGAGAACAAGCGGAACGCAGTGCACATCAAGGGACCATTCTCTGTGGAAGCTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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| CDS CAA 72 bp | AACCTGGATGGGTCAGCTTCCACAGAGAATGGTCCCTaGATGTGCACTGCGTTCCGCTTGTTCTCAAACATG | + |
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Preference number: 6 (lower is better) Translates to: NLDGSASTENGP*MCTAFRLFSNM Trigger: CATGTTTGAGAACAAGCGGAACGCAGTGCACATCAAGGGACCATTCTCTGTGGAAGCTGACCCATCCAGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031555.3 |
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