RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LETMD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037353

Ensembl transcript IDs: ENSMUST00000037001.10, ENSMUST00000229012.2, ENSMUST00000229648.2, ENSMUST00000230294.2

Found 183 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAACACCCCAGAGCTTCGTGGGCTCCTTGCCGGTGTTCCAGCGCCTaGGAGCTGGGGGTAGGAAGACCAGATCTCAAGGTCCTCTTCGGC +
Preference number: 1 (lower is better)
Translates to: QHPRASWAPCRCSSA*ELGVGRPDLKVLFG
Trigger: GCCGAAGAGGACCTTGAGATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCACGAAGCTCTGGGGTGTTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR CCA 90 bp CAATCCCCAGCTTTGCCAGAGCCCTGTCCAGCTGGTGGATCACGGTaGTGTGACTCTTTAGCCGCTGCCTCAGCAAGGGCGGGGGCAGGT +
Preference number: 1 (lower is better)
Translates to: QSPALPEPCPAGGSR*CDSLAAASARAGAG
Trigger: ACCTGCCCCCGCCCTTGCTGAGGCAGCGGCTAAAGAGTCACACCACCGTGATCCACCAGCTGGACAGGGCTCTGGCAAAGCTGGGGATTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR TCA 90 bp GGCCAGTGCAGCCGCAGCACCCGAGTCTGGAGAGAGAGGATCCCTTaGGCACAGGGATTGGAGGCCAGCCTGGGCAACAGAGACTCATCT +
Preference number: 1 (lower is better)
Translates to: GQCSRSTRVWRERIP*AQGLEASLGNRDSS
Trigger: AGATGAGTCTCTGTTGCCCAGGCTGGCCTCCAATCCCTGTGCTCAAGGGATCCTCTCTCTCCAGACTCGGGTGCTGCGGCTGCACTGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR TCA 90 bp GACTCTTTAGCCGCTGCCTCAGCAAGGGCGGGGGCAGGTAAGGTGTaGGGAGCATGGCCTGGCTCAAGGCTCTCATCTGCGAGGCTTGGA +
Preference number: 1 (lower is better)
Translates to: DSLAAASARAGAGKV*GAWPGSRLSSARLG
Trigger: TCCAAGCCTCGCAGATGAGAGCCTTGAGCCAGGCCATGCTCCTCACACCTTACCTGCCCCCGCCCTTGCTGAGGCAGCGGCTAAAGAGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 90 bp CTGGCTGCTTGTAACTGGCTTCAGAGCCTGGGACCTCTGGAGCCCTaGGTGGAAAGATACCTTGGTGCACAGGTCTGTCAGCTGCCTCCG +
Preference number: 1 (lower is better)
Translates to: LAACNWLQSLGPLEP*VERYLGAQVCQLPP
Trigger: CGGAGGCAGCTGACAGACCTGTGCACCAAGGTATCTTTCCACCCAGGGCTCCAGAGGTCCCAGGCTCTGAAGCCAGTTACAAGCAGCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR GCA 90 bp TGTTGGCGCAGGGCCAGGCATGGGTGCCCTCACCCCAGAGTAAGCTaGACTGTTCTTGGTACCAGAGATCCGCTAGTGCACAAAGACTCG +
Preference number: 1 (lower is better)
Translates to: CWRRARHGCPHPRVS*TVLGTRDPLVHKDS
Trigger: CGAGTCTTTGTGCACTAGCGGATCTCTGGTACCAAGAACAGTGCAGCTTACTCTGGGGTGAGGGCACCCATGCCTGGCCCTGCGCCAACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR CCA 90 bp GCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTaGTCCCACACCACTACACTAGGTGACTGCAGGACAATGCCGTCC +
Preference number: 1 (lower is better)
Translates to: ASHTSGAHRQLTGAS*SHTTTLGDCRTMPS
Trigger: GGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000229648.2
ENSMUST00000230294.2
3UTR TCA 90 bp CAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACACTAGGTaGCTGCAGGACAATGCCGTCCTTTCCGTGGGGTTCACTCAGCGC +
Preference number: 1 (lower is better)
Translates to: QTADRCFLVPHHYTR*LQDNAVLSVGFTQR
Trigger: GCGCTGAGTGAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR GCA 90 bp TGCAGCAAGAGGGACAGCTCGGGTTCTTTCAGGCTACAGGAGATGTaGAACCATTCCCCCAGCCAGGCTCGACACCTGTCGTCAGCAATG +
Preference number: 1 (lower is better)
Translates to: CSKRDSSGSFRLQEM*NHSPSQARHLSSAM
Trigger: CATTGCTGACGACAGGTGTCGAGCCTGGCTGGGGGAATGGTTGCACATCTCCTGTAGCCTGAAAGAACCCGAGCTGTCCCTCTTGCTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR GCA 90 bp CAGCTGACAGGTGCTTCTTGGTCCCACACCACTACACTAGGTGACTaGAGGACAATGCCGTCCTTTCCGTGGGGTTCACTCAGCGCCTTG +
Preference number: 1 (lower is better)
Translates to: QLTGASWSHTTTLGD*RTMPSFPWGSLSAL
Trigger: CAAGGCGCTGAGTGAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 90 bp TCCTTTCCGTGGGGTTCACTCAGCGCCTTGTCTCAAGGTAGTTGGTaGAGAGCAGGACCACGTTGTGCAGCAAGAGGGACAGCTCGGGTT +
Preference number: 1 (lower is better)
Translates to: SFPWGSLSALSQGSW*RAGPRCAARGTARV
Trigger: AACCCGAGCTGTCCCTCTTGCTGCACAACGTGGTCCTGCTCTCCACCAACTACCTTGAGACAAGGCGCTGAGTGAACCCCACGGAAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR GCA 90 bp GGTAGAGTTCAAGCCACGAAGATAGCAAGCCGATTTCACTTCCTGTaGAGTCAGCTGGCCAATCCCCAGCTTTGCCAGAGCCCTGTCCAG +
Preference number: 1 (lower is better)
Translates to: GRVQATKIASRFHFL*SQLANPQLCQSPVQ
Trigger: CTGGACAGGGCTCTGGCAAAGCTGGGGATTGGCCAGCTGACTGCACAGGAAGTGAAATCGGCTTGCTATCTTCGTGGCTTGAACTCTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 90 bp CACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTaGGGTTCACTCAGCGCCTTGTCTCAAGGTAGTTGGTGGAGAGCA +
Preference number: 1 (lower is better)
Translates to: HTTTLGDCRTMPSFP*GSLSALSQGSWWRA
Trigger: TGCTCTCCACCAACTACCTTGAGACAAGGCGCTGAGTGAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR GCA 90 bp GCAAATCTCCTGGTCTCCCAGGGCTGGGCAGTAATTAGTACCTTGTaGGTTTTTGACCCACAGCCTAGAGAAGGCAGCCACTGCTGGTTA +
Preference number: 1 (lower is better)
Translates to: ANLLVSQGWAVISTL*VFDPQPREGSHCWL
Trigger: TAACCAGCAGTGGCTGCCTTCTCTAGGCTGTGGGTCAAAAACGCACAAGGTACTAATTACTGCCCAGCCCTGGGAGACCAGGAGATTTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR TCA 90 bp GATACCTTGGTGCACAGGTCTGTCAGCTGCCTCCGGAGTTTCTCATaGGAAACAAAAGTGCTGGCCCTTCTTAGATGTGTGATGACTTCC +
Preference number: 1 (lower is better)
Translates to: DTLVHRSVSCLRSFS*ETKVLALLRCVMTS
Trigger: GGAAGTCATCACACATCTAAGAAGGGCCAGCACTTTTGTTTCTCATGAGAAACTCCGGAGGCAGCTGACAGACCTGTGCACCAAGGTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 90 bp AAGCCCAACTCACTATCTATTGCAAATCTCCTGGTCTCCCAGGGCTaGGCAGTAATTAGTACCTTGTGCGTTTTTGACCCACAGCCTAGA +
Preference number: 1 (lower is better)
Translates to: KPNSLSIANLLVSQG*AVISTLCVFDPQPR
Trigger: TCTAGGCTGTGGGTCAAAAACGCACAAGGTACTAATTACTGCCCAGCCCTGGGAGACCAGGAGATTTGCAATAGATAGTGAGTTGGGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CCA 90 bp TGGGCTCCTTGCCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGGAAGACCAGATCCACTGCCGGGGTGTTaGCGCAGGGCCAGGCATGGG +
Preference number: 2 (lower is better)
Translates to: WAPCRCSSAWELGVGRPDPLPGC*RRARHG
Trigger: CCCATGCCTGGCCCTGCGCCAACACCCCGGCAGTGG...ATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR GCA 90 bp TGGGCTCCTTGCCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGGAAGACCAGATAGCAGGACCACGTTGTaGAGCAAGAGGGACAGCTCG +
Preference number: 2 (lower is better)
Translates to: WAPCRCSSAWELGVGRPDSRTTL*SKRDSS
Trigger: CGAGCTGTCCCTCTTGCTGCACAACGTGGTCCTGCT...ATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CCA 90 bp AGAAAAACCACTGCCGGGGTGTTGGCGCAGGGCCAGGCATGGGTGCCCTCACCCGATTGGAGGCCAGCCTaGGCAACAGAGACTCATCTC +
Preference number: 2 (lower is better)
Translates to: RKTTAGVLAQGQAWVPSPDWRPA*ATETHL
Trigger: GAGATGAGTCTCTGTTGCCCAGGCTGGCCTCCAATC...GGGTGAGGGCACCCATGCCTGGCCCTGCGCCAACACCCCGGCAGTGGTTTTTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CCA 90 bp ACAGCCTGGAAAGTAAGACACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCACGGTGTTCCAGCGCCTaGGAGCTGGGGGTAGGAAGA +
Preference number: 2 (lower is better)
Translates to: TAWKVRHWGQTQGGARQPRCSSA*ELGVGR
Trigger: TCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCG...TGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CCA 90 bp GAGGAGCATGGCCTGGCTCAAGGCTCTCATCTGCGAGGCTTGGAGCTGGCTGAAACTGGCTTCAGAGCCTaGGACCTCTGGAGCCCTGGG +
Preference number: 2 (lower is better)
Translates to: EEHGLAQGSHLRGLELAETGFRA*DLWSPG
Trigger: CCCAGGGCTCCAGAGGTCCCAGGCTCTGAAGCCAGT...TTCAGCCAGCTCCAAGCCTCGCAGATGAGAGCCTTGAGCCAGGCCATGCTCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CCA 90 bp TGGGCTCCTTGCCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGGAAGACCAGATCTCTGGAGCCCTGGGTaGAAAGATACCTTGGTGCAC +
Preference number: 2 (lower is better)
Translates to: WAPCRCSSAWELGVGRPDLWSPG*KDTLVH
Trigger: GTGCACCAAGGTATCTTTCCACCCAGGGCTCCAGAG...ATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CCA 90 bp ACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTGGACCTCTGGAGCCCTaGGTGGAAAGATACCTTGGT +
Preference number: 2 (lower is better)
Translates to: TGDKRREGPGSHSFSPPPGPLEP*VERYLG
Trigger: ACCAAGGTATCTTTCCACCCAGGGCTCCAGAGGTCC...AGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CCA 90 bp ACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTCTGGCTGCTTGTAACTaGCTTCAGAGCCTGGGACCT +
Preference number: 2 (lower is better)
Translates to: TGDKRREGPGSHSFSPPPLAACN*LQSLGP
Trigger: AGGTCCCAGGCTCTGAAGCCAGTTACAAGCAGCCAG...AGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR GCA 90 bp CGCAGGGCCAGGCATGGGTGCCCTCACCCCAGAGTAAGCTGCACTGTTCTTGGTGGAAAGATACCTTGGTaGACAGGTCTGTCAGCTGCC +
Preference number: 2 (lower is better)
Translates to: RRARHGCPHPRVSCTVLGGKIPW*TGLSAA
Trigger: GGCAGCTGACAGACCTGTGCACCAAGGTATCTTTCC...ACCAAGAACAGTGCAGCTTACTCTGGGGTGAGGGCACCCATGCCTGGCCCTGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR GCA 90 bp GACAGCCTGGAAAGTAAGACACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCCGATTTCACTTCCTGTaGAGTCAGCTGGCCAATCCC +
Preference number: 2 (lower is better)
Translates to: DSLESKTLGTNAGRGQAARFHFL*SQLANP
Trigger: GGGATTGGCCAGCTGACTGCACAGGAAGTGAAATCG...GGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CCA 90 bp ACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGGGTTCACTCAGCCGGTGTTCCAGCGCCTaGGAGCTGGGGGTAGGAAGA +
Preference number: 2 (lower is better)
Translates to: TTLGDCRTMPSFPWGSLSRCSSA*ELGVGR
Trigger: TCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCG...GCTGAGTGAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CCA 90 bp ACAGCCTGGAAAGTAAGACACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCACGCTCCAGGAGGCTGTaGCAGAATTGTCTGTCAGGA +
Preference number: 2 (lower is better)
Translates to: TAWKVRHWGQTQGGARQPRSRRL*QNCLSG
Trigger: TCCTGACAGACAATTCTGCCACAGCCTCCTGGAGCG...TGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CCA 90 bp CGCAGGGCCAGGCATGGGTGCCCTCACCCCAGAGTAAGCTGCACTGTTCTTGGTCTGACAGGTGCTTCTTaGTCCCACACCACTACACTA +
Preference number: 2 (lower is better)
Translates to: RRARHGCPHPRVSCTVLGLTGAS*SHTTTL
Trigger: TAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAG...ACCAAGAACAGTGCAGCTTACTCTGGGGTGAGGGCACCCATGCCTGGCCCTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CCA 90 bp GGTAAAAAGCACTCAGCCAAGACAACACCCCAGAGCTTCGTGGGCTCCTTGCCGCTTGAGCACAGGGATTaGAGGCCAGCCTGGGCAACA +
Preference number: 2 (lower is better)
Translates to: GKKHSAKTTPQSFVGSLPLEHRD*RPAWAT
Trigger: TGTTGCCCAGGCTGGCCTCCAATCCCTGTGCTCAAG...CGGCAAGGAGCCCACGAAGCTCTGGGGTGTTGTCTTGGCTGAGTGCTTTTTACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CCA 90 bp AGGAAAACAAGGCTCGGCTGTAGAGAACGTGGCAGTGAGGCCAGTGCAGCCGCACGCTCCAGGAGGCTGTaGCAGAATTGTCTGTCAGGA +
Preference number: 2 (lower is better)
Translates to: RKTRLGCRERGSEASAAARSRRL*QNCLSG
Trigger: TCCTGACAGACAATTCTGCCACAGCCTCCTGGAGCG...TGCGGCTGCACTGGCCTCACTGCCACGTTCTCTACAGCCGAGCCTTGTTTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CCA 90 bp GGTAAAAAGCACTCAGCCAAGACAACACCCCAGAGCTTCGTGGGCTCCTTGCCGAGAGCCTGGGACCTCTaGAGCCCTGGGTGGAAAGAT +
Preference number: 2 (lower is better)
Translates to: GKKHSAKTTPQSFVGSLPRAWDL*SPGWKD
Trigger: ATCTTTCCACCCAGGGCTCCAGAGGTCCCAGGCTCT...CGGCAAGGAGCCCACGAAGCTCTGGGGTGTTGTCTTGGCTGAGTGCTTTTTACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR TCA 90 bp GACAGCCTGGAAAGTAAGACACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCGTGTCCATAGAATACTaGGAGGAGGGGTGGAAGTTA +
Preference number: 2 (lower is better)
Translates to: DSLESKTLGTNAGRGQAAVSIEY*EEGWKL
Trigger: TAACTTCCACCCCTCCTCTCAGTATTCTATGGACAC...GGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR TCA 90 bp GCACACATGGGTTTGTTAGGCTCAAGCTGTGAAGGAATGTCTATAGCTCCCAGGGTGCGCACAGACAGCTaGCAGGTGCTTCTTGGTCCC +
Preference number: 2 (lower is better)
Translates to: AHMGLLGSSCEGMSIAPRVRTDS*QVLLGP
Trigger: GGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCAC...CCTGGGAGCTATAGACATTCCTTCACAGCTTGAGCCTAACAAACCCATGTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000229648.2
ENSMUST00000230294.2
3UTR-3UTR GCA 90 bp GCAGCCGCAGCACCCGAGTCTGGAGAGAGAGGATCCCTTGAGCACAGGGATTGGCATGAGAAACAAAAGTaGTGGCCCTTCTTAGATGTG +
Preference number: 2 (lower is better)
Translates to: AAAAPESGERGSLEHRDWHEKQK*WPFLDV
Trigger: CACATCTAAGAAGGGCCAGCACTTTTGTTTCTCATG...CCAATCCCTGTGCTCAAGGGATCCTCTCTCTCCAGACTCGGGTGCTGCGGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CAA 90 bp ATTGCAAATCTCCTGGTCTCCCAGGGCTGGGCAGTAATTAGTACCTaGTGCGTTTTTGACCCACAGCCTAGAGAAGGCAGCCACTGCTGG +
Preference number: 2 (lower is better)
Translates to: IANLLVSQGWAVIST*CVFDPQPREGSHCW
Trigger: CCAGCAGTGGCTGCCTTCTCTAGGCTGTGGGTCAAAAACGCACAAGGTACTAATTACTGCCCAGCCCTGGGAGACCAGGAGATTTGCAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CCA 90 bp GGTCTCAGGAAAACAAGGCTCGGCTGTAGAGAACGTGGCAGTGAGGCCAGTGCAACTGCTGGTTACAGATaGCTTAGTGCAACACAGTGG +
Preference number: 2 (lower is better)
Translates to: GLRKTRLGCRERGSEASATAGYR*LSATQW
Trigger: CCACTGTGTTGCACTAAGCCATCTGTAACCAGCAGT...TGCACTGGCCTCACTGCCACGTTCTCTACAGCCGAGCCTTGTTTTCCTGAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CCA 90 bp GAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTTTAGAATGTTCCCATAAATCTCAAGGTAGTTGGTaGAGAGCAGGACCACGTTGT +
Preference number: 2 (lower is better)
Translates to: EGPGSHSFSPPPLECSHKSQGSW*RAGPRC
Trigger: ACAACGTGGTCCTGCTCTCCACCAACTACCTTGAGA...TTTATGGGAACATTCTAAAGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CCA 90 bp AGATCTCAAGGTCCTCTTCGGCTACATGAGACACGGGGTCTCAGGAAAACAAGGCACATGATTCCCACCTaGGCAAAGGCTGACTTTATA +
Preference number: 2 (lower is better)
Translates to: RSQGPLRLHETRGLRKTRHMIPT*AKADFI
Trigger: TATAAAGTCAGCCTTTGCCCAGGTGGGAATCATGTG...CCTTGTTTTCCTGAGACCCCGTGTCTCATGTAGCCGAAGAGGACCTTGAGATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR TCA 90 bp GACTTTATAGGACCTAAGTATTACATCACAATAAAAGTTCAGTACCAGAGATGCGTGCGCACAGACAGCTaGCAGGTGCTTCTTGGTCCC +
Preference number: 2 (lower is better)
Translates to: DFIGPKYYITIKVQYQRCVRTDS*QVLLGP
Trigger: GGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCAC...GCATCTCTGGTACTGAACTTTTATTGTGATGTAATACTTAGGTCCTATAAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR TCA 90 bp AAGTATTACATCACAATAAAAGTTCAGTACCAGAGATGCTTGCCAGTTCCAGGTCTCCGGAGTTTCTCATaGGAAACAAAAGTGCTGGCC +
Preference number: 2 (lower is better)
Translates to: KYYITIKVQYQRCLPVPGLRSFS*ETKVLA
Trigger: GGCCAGCACTTTTGTTTCTCATGAGAAACTCCGGAG...ACCTGGAACTGGCAAGCATCTCTGGTACTGAACTTTTATTGTGATGTAATACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CCA 90 bp GACTTTATAGGACCTAAGTATTACATCACAATAAAAGTTCAGTACCAGAGATGCCTGACAGGTGCTTCTTaGTCCCACACCACTACACTA +
Preference number: 2 (lower is better)
Translates to: DFIGPKYYITIKVQYQRCLTGAS*SHTTTL
Trigger: TAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAG...GCATCTCTGGTACTGAACTTTTATTGTGATGTAATACTTAGGTCCTATAAAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CAA 90 bp ACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTACCACTGCCGGGGTGTaGGCGCAGGGCCAGGCATGG +
Preference number: 3 (lower is better)
Translates to: TGDKRREGPGSHSFSPPPTTAGV*AQGQAW
Trigger: CCATGCCTGGCCCTGCGCCAACACCCCGGCAGTGGT...AGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR GCA 72 bp CAGCCAAGACAACACCCCAGAGCTTCGTGGGCTCCTTaGCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGGA +
Preference number: 3 (lower is better)
Translates to: QPRQHPRASWAP*RCSSAWELGVG
Trigger: TCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCACGAAGCTCTGGGGTGTTGTCTTGGCTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR GCA 72 bp CCACTGCCGGGGTGTTGGCGCAGGGCCAGGCATGGGTaGCCTCACCCCAGAGTAAGCTGCACTGTTCTTGGT +
Preference number: 3 (lower is better)
Translates to: PLPGCWRRARHG*PHPRVSCTVLG
Trigger: ACCAAGAACAGTGCAGCTTACTCTGGGGTGAGGGCACCCATGCCTGGCCCTGCGCCAACACCCCGGCAGTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CAA 90 bp AGAAAAACCACTGCCGGGGTGTTGGCGCAGGGCCAGGCATGGGTGCCCTCACCCTCTCATCTGCGAGGCTaGGAGCTGGCTGAAGCCCAA +
Preference number: 3 (lower is better)
Translates to: RKTTAGVLAQGQAWVPSPSHLRG*ELAEAQ
Trigger: TTGGGCTTCAGCCAGCTCCAAGCCTCGCAGATGAGA...GGGTGAGGGCACCCATGCCTGGCCCTGCGCCAACACCCCGGCAGTGGTTTTTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CAA 90 bp TGGGCTCCTTGCCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGGAAGACCAGATGAGAGCAGGACCACGTaGTGCAGCAAGAGGGACAGC +
Preference number: 3 (lower is better)
Translates to: WAPCRCSSAWELGVGRPDESRTT*CSKRDS
Trigger: GCTGTCCCTCTTGCTGCACAACGTGGTCCTGCTCTC...ATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 72 bp AGAGCTTCGTGGGCTCCTTGCCGGTGTTCCAGCGCCTaGGAGCTGGGGGTAGGAAGACCAGATCTCAAGGTC +
Preference number: 3 (lower is better)
Translates to: RASWAPCRCSSA*ELGVGRPDLKV
Trigger: GACCTTGAGATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCACGAAGCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR CCA 72 bp GCTTTGCCAGAGCCCTGTCCAGCTGGTGGATCACGGTaGTGTGACTCTTTAGCCGCTGCCTCAGCAAGGGCG +
Preference number: 3 (lower is better)
Translates to: ALPEPCPAGGSR*CDSLAAASARA
Trigger: CGCCCTTGCTGAGGCAGCGGCTAAAGAGTCACACCACCGTGATCCACCAGCTGGACAGGGCTCTGGCAAAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 72 bp AAAAGCACTCAGCCAAGACAACACCCCAGAGCTTCGTaGGCTCCTTGCCGGTGTTCCAGCGCCTGGGAGCTG +
Preference number: 3 (lower is better)
Translates to: KSTQPRQHPRAS*APCRCSSAWEL
Trigger: CAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCACGAAGCTCTGGGGTGTTGTCTTGGCTGAGTGCTTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR CCA 72 bp CCTAGGGGCTGTGTGACAGCCTGGAAAGTAAGACACTaGGGACAAACGCAGGGAGGGGCCAGGCAGCCATTC +
Preference number: 3 (lower is better)
Translates to: PRGCVTAWKVRH*GQTQGGARQPF
Trigger: GAATGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGTCACACAGCCCCTAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CAA 90 bp ACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTGCTGACAGGTGCTTCTaGGTCCCACACCACTACACT +
Preference number: 3 (lower is better)
Translates to: TGDKRREGPGSHSFSPPPADRCF*VPHHYT
Trigger: AGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGC...AGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR GCA 72 bp AGGGCCAGGCATGGGTGCCCTCACCCCAGAGTAAGCTaGACTGTTCTTGGTACCAGAGATCCGCTAGTGCAC +
Preference number: 3 (lower is better)
Translates to: RARHGCPHPRVS*TVLGTRDPLVH
Trigger: GTGCACTAGCGGATCTCTGGTACCAAGAACAGTGCAGCTTACTCTGGGGTGAGGGCACCCATGCCTGGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR GCA 72 bp AGGGACAGCTCGGGTTCTTTCAGGCTACAGGAGATGTaGAACCATTCCCCCAGCCAGGCTCGACACCTGTCG +
Preference number: 3 (lower is better)
Translates to: RDSSGSFRLQEM*NHSPSQARHLS
Trigger: CGACAGGTGTCGAGCCTGGCTGGGGGAATGGTTGCACATCTCCTGTAGCCTGAAAGAACCCGAGCTGTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 72 bp CCTGGGACCTCTGGAGCCCTGGGTGGAAAGATACCTTaGTGCACAGGTCTGTCAGCTGCCTCCGGAGTTTCT +
Preference number: 3 (lower is better)
Translates to: PGTSGALGGKIP*CTGLSAASGVS
Trigger: AGAAACTCCGGAGGCAGCTGACAGACCTGTGCACCAAGGTATCTTTCCACCCAGGGCTCCAGAGGTCCCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 72 bp ACTGGCTTCAGAGCCTGGGACCTCTGGAGCCCTGGGTaGAAAGATACCTTGGTGCACAGGTCTGTCAGCTGC +
Preference number: 3 (lower is better)
Translates to: TGFRAWDLWSPG*KDTLVHRSVSC
Trigger: GCAGCTGACAGACCTGTGCACCAAGGTATCTTTCCACCCAGGGCTCCAGAGGTCCCAGGCTCTGAAGCCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 72 bp CCGTGGGGTTCACTCAGCGCCTTGTCTCAAGGTAGTTaGTGGAGAGCAGGACCACGTTGTGCAGCAAGAGGG +
Preference number: 3 (lower is better)
Translates to: PWGSLSALSQGS*WRAGPRCAARG
Trigger: CCCTCTTGCTGCACAACGTGGTCCTGCTCTCCACCAACTACCTTGAGACAAGGCGCTGAGTGAACCCCACGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CAA 90 bp GGTAAAAAGCACTCAGCCAAGACAACACCCCAGAGCTTCGTGGGCTCCTTGCCGGAGAGAGAGGATCCCTaGAGCACAGGGATTGGAGGC +
Preference number: 3 (lower is better)
Translates to: GKKHSAKTTPQSFVGSLPEREDP*STGIGG
Trigger: GCCTCCAATCCCTGTGCTCAAGGGATCCTCTCTCTC...CGGCAAGGAGCCCACGAAGCTCTGGGGTGTTGTCTTGGCTGAGTGCTTTTTACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR CCA 72 bp GACCCAGACTGGCTGCTTGTAACTGGCTTCAGAGCCTaGGACCTCTGGAGCCCTGGGTGGAAAGATACCTTG +
Preference number: 3 (lower is better)
Translates to: DPDWLLVTGFRA*DLWSPGWKDTL
Trigger: CAAGGTATCTTTCCACCCAGGGCTCCAGAGGTCCCAGGCTCTGAAGCCAGTTACAAGCAGCCAGTCTGGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CAA 90 bp GACAGCCTGGAAAGTAAGACACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCGAAACAGCCCTACTTTaGGTCTCACCAGAAAGGATG +
Preference number: 3 (lower is better)
Translates to: DSLESKTLGTNAGRGQAAETALL*VSPERM
Trigger: CATCCTTTCTGGTGAGACCAAAAGTAGGGCTGTTTC...GGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR TCA 72 bp GACAGGTGCTTCTTGGTCCCACACCACTACACTAGGTaGCTGCAGGACAATGCCGTCCTTTCCGTGGGGTTC +
Preference number: 3 (lower is better)
Translates to: DRCFLVPHHYTR*LQDNAVLSVGF
Trigger: GAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000229648.2
ENSMUST00000230294.2
3UTR CCA 72 bp TGTAACTGGCTTCAGAGCCTGGGACCTCTGGAGCCCTaGGTGGAAAGATACCTTGGTGCACAGGTCTGTCAG +
Preference number: 3 (lower is better)
Translates to: CNWLQSLGPLEP*VERYLGAQVCQ
Trigger: CTGACAGACCTGTGCACCAAGGTATCTTTCCACCCAGGGCTCCAGAGGTCCCAGGCTCTGAAGCCAGTTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 72 bp GAAGCAATCTCTGAGAGCCAGGACGTCCTGTGCTGCTaGGTGGGTGCCACTCTGCACCTTGCAAGAAATGAG +
Preference number: 3 (lower is better)
Translates to: EAISESQDVLCC*VGATLHLARNE
Trigger: CTCATTTCTTGCAAGGTGCAGAGTGGCACCCACCCAGCAGCACAGGACGTCCTGGCTCTCAGAGATTGCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 72 bp TGGGGTTCACTCAGCGCCTTGTCTCAAGGTAGTTGGTaGAGAGCAGGACCACGTTGTGCAGCAAGAGGGACA +
Preference number: 3 (lower is better)
Translates to: WGSLSALSQGSW*RAGPRCAARGT
Trigger: TGTCCCTCTTGCTGCACAACGTGGTCCTGCTCTCCACCAACTACCTTGAGACAAGGCGCTGAGTGAACCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CAA 90 bp ACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTTTAGCACACATGGGTTaGTTAGGCTCAAGCTGTGAA +
Preference number: 3 (lower is better)
Translates to: TGDKRREGPGSHSFSPPPLAHMG*LGSSCE
Trigger: TTCACAGCTTGAGCCTAACAAACCCATGTGTGCTAA...AGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR GCA 72 bp CTGGTCTCCCAGGGCTGGGCAGTAATTAGTACCTTGTaGGTTTTTGACCCACAGCCTAGAGAAGGCAGCCAC +
Preference number: 3 (lower is better)
Translates to: LVSQGWAVISTL*VFDPQPREGSH
Trigger: GTGGCTGCCTTCTCTAGGCTGTGGGTCAAAAACGCACAAGGTACTAATTACTGCCCAGCCCTGGGAGACCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR GCA 72 bp CAAGCCACGAAGATAGCAAGCCGATTTCACTTCCTGTaGAGTCAGCTGGCCAATCCCCAGCTTTGCCAGAGC +
Preference number: 3 (lower is better)
Translates to: QATKIASRFHFL*SQLANPQLCQS
Trigger: GCTCTGGCAAAGCTGGGGATTGGCCAGCTGACTGCACAGGAAGTGAAATCGGCTTGCTATCTTCGTGGCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 72 bp ACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTaGTCCCACACCACTACACTAGGTGACTGCAGGACA +
Preference number: 3 (lower is better)
Translates to: TSGAHRQLTGAS*SHTTTLGDCRT
Trigger: TGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000229648.2
ENSMUST00000230294.2
3UTR CCA 72 bp TGGGTGCCCTCACCCCAGAGTAAGCTGCACTGTTCTTaGTACCAGAGATCCGCTAGTGCACAAAGACTCGGT +
Preference number: 3 (lower is better)
Translates to: WVPSPQSKLHCS*YQRSASAQRLG
Trigger: ACCGAGTCTTTGTGCACTAGCGGATCTCTGGTACCAAGAACAGTGCAGCTTACTCTGGGGTGAGGGCACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR CCA 72 bp CAATCTCTGAGAGCCAGGACGTCCTGTGCTGCTGGGTaGGTGCCACTCTGCACCTTGCAAGAAATGAGTAGA +
Preference number: 3 (lower is better)
Translates to: QSLRARTSCAAG*VPLCTLQEMSR
Trigger: TCTACTCATTTCTTGCAAGGTGCAGAGTGGCACCCACCCAGCAGCACAGGACGTCCTGGCTCTCAGAGATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 72 bp ACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTaGGGTTCACTCAGCGCCTTGTCTCAAGGTAGTTGG +
Preference number: 3 (lower is better)
Translates to: TLGDCRTMPSFP*GSLSALSQGSW
Trigger: CCAACTACCTTGAGACAAGGCGCTGAGTGAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CAA 90 bp ACATGTAAGGTCCCTAGGGGCTGTGTGACAGCCTGGAAAGTAAGACACTGGGGAGCTGACAGGTGCTTCTaGGTCCCACACCACTACACT +
Preference number: 3 (lower is better)
Translates to: TCKVPRGCVTAWKVRHWGADRCF*VPHHYT
Trigger: AGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGC...TCCCCAGTGTCTTACTTTCCAGGCTGTCACACAGCCCCTAGGGACCTTACATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CAA 90 bp TGGGCTCCTTGCCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGGAAGACCAGATAATTGTCTGTCAGGATaGCCAGGTTATACAGTAAGA +
Preference number: 3 (lower is better)
Translates to: WAPCRCSSAWELGVGRPDNCLSG*PGYTVR
Trigger: TCTTACTGTATAACCTGGCAATCCTGACAGACAATT...ATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CAA 90 bp TGGGCTCCTTGCCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGGAAGACCAGATCAAGAAATCAATTTGTaGTTTGGGGGTCCAGAAATG +
Preference number: 3 (lower is better)
Translates to: WAPCRCSSAWELGVGRPDQEINL*FGGPEM
Trigger: CATTTCTGGACCCCCAAACAACAAATTGATTTCTTG...ATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR-3UTR CAA 90 bp AGATCTCAAGGTCCTCTTCGGCTACATGAGACACGGGGTCTCAGGAAAACAAGGGCTGACAGGTGCTTCTaGGTCCCACACCACTACACT +
Preference number: 3 (lower is better)
Translates to: RSQGPLRLHETRGLRKTRADRCF*VPHHYT
Trigger: AGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGC...CCTTGTTTTCCTGAGACCCCGTGTCTCATGTAGCCGAAGAGGACCTTGAGATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CAA 90 bp ACAGCCTGGAAAGTAAGACACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCAAATTGTCTGTCAGGATaGCCAGGTTATACAGTAAGA +
Preference number: 3 (lower is better)
Translates to: TAWKVRHWGQTQGGARQPNCLSG*PGYTVR
Trigger: TCTTACTGTATAACCTGGCAATCCTGACAGACAATT...TGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CAA 90 bp GGTCTCAGGAAAACAAGGCTCGGCTGTAGAGAACGTGGCAGTGAGGCCAGTGCAGTCCAAGAAATCAATTaGTTGTTTGGGGGTCCAGAA +
Preference number: 3 (lower is better)
Translates to: GLRKTRLGCRERGSEASAVQEIN*LFGGPE
Trigger: TTCTGGACCCCCAAACAACAAATTGATTTCTTGGAC...TGCACTGGCCTCACTGCCACGTTCTCTACAGCCGAGCCTTGTTTTCCTGAGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR TCA 72 bp GTGCACAGGTCTGTCAGCTGCCTCCGGAGTTTCTCATaGGAAACAAAAGTGCTGGCCCTTCTTAGATGTGTG +
Preference number: 3 (lower is better)
Translates to: VHRSVSCLRSFS*ETKVLALLRCV
Trigger: CACACATCTAAGAAGGGCCAGCACTTTTGTTTCTCATGAGAAACTCCGGAGGCAGCTGACAGACCTGTGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 72 bp GCCCATGATAGTGACGAGGAGAAACAGCCCTACTTTTaGTCTCACCAGAAAGGATGGGTGTGGCTCATGCTT +
Preference number: 3 (lower is better)
Translates to: AHDSDEEKQPYF*SHQKGWVWLML
Trigger: AAGCATGAGCCACACCCATCCTTTCTGGTGAGACCAAAAGTAGGGCTGTTTCTCCTCGTCACTATCATGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CAA 90 bp ACATGTAAGGTCCCTAGGGGCTGTGTGACAGCCTGGAAAGTAAGACACTGGGGATTAGCACACATGGGTTaGTTAGGCTCAAGCTGTGAA +
Preference number: 3 (lower is better)
Translates to: TCKVPRGCVTAWKVRHWGLAHMG*LGSSCE
Trigger: TTCACAGCTTGAGCCTAACAAACCCATGTGTGCTAA...TCCCCAGTGTCTTACTTTCCAGGCTGTCACACAGCCCCTAGGGACCTTACATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
3UTR-3UTR CAA 90 bp GAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTTTAGAATGTTCCCATAAAGTGCCACTCTGCACCTaGCAAGAAATGAGTAGATTT +
Preference number: 3 (lower is better)
Translates to: EGPGSHSFSPPPLECSHKVPLCT*QEMSRF
Trigger: AAATCTACTCATTTCTTGCAAGGTGCAGAGTGGCAC...TTTATGGGAACATTCTAAAGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
3UTR CCA 72 bp TCACTATCTATTGCAAATCTCCTGGTCTCCCAGGGCTaGGCAGTAATTAGTACCTTGTGCGTTTTTGACCCA +
Preference number: 3 (lower is better)
Translates to: SLSIANLLVSQG*AVISTLCVFDP
Trigger: TGGGTCAAAAACGCACAAGGTACTAATTACTGCCCAGCCCTGGGAGACCAGGAGATTTGCAATAGATAGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp TGGGCTCCTTGCCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGGAAGACCAGATCCAGAGCGGCCCAGCTaGAGCCTCCGGGTGACAAAG +
Preference number: 4 (lower is better)
Translates to: WAPCRCSSAWELGVGRPDPERPS*SLRVTK
Trigger: CTTTGTCACCCGGAGGCTGCAGCTGGGCCGCTCTGG...ATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
3UTR CAA 72 bp TCAGCCAAGACAACACCCCAGAGCTTCGTGGGCTCCTaGCCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGG +
Preference number: 4 (lower is better)
Translates to: SAKTTPQSFVGS*PVFQRLGAGGR
Trigger: CCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCACGAAGCTCTGGGGTGTTGTCTTGGCTGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp ACCCACTCCGCTGCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTGTGCTGCTGGGTGGGTaGCACTCTGCACCTTGGTGC +
Preference number: 4 (lower is better)
Translates to: THSAASHTSGAHRQLTGAVLLGG*HSAPWC
Trigger: GCACCAAGGTGCAGAGTGGCACCCACCCAGCAGCAC...AGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGCAGCGGAGTGGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GCAGCCGCAGCACCCGAGTCTGGAGAGAGAGGATCCCTTGAGCACAGGGATTGGAGCCAGGACGTCCTGTaGTGCTGGGTGGGTGCCACT +
Preference number: 4 (lower is better)
Translates to: AAAAPESGERGSLEHRDWSQDVL*CWVGAT
Trigger: AGTGGCACCCACCCAGCAGCACAGGACGTCCTGGCT...CCAATCCCTGTGCTCAAGGGATCCTCTCTCTCCAGACTCGGGTGCTGCGGCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GCAGCCGCAGCACCCGAGTCTGGAGAGAGAGGATCCCTTGAGCACAGGGATTGGGGGTGGGTGCCACTCTaGACCTTGGTGCACAGGTCT +
Preference number: 4 (lower is better)
Translates to: AAAAPESGERGSLEHRDWGWVPL*TLVHRS
Trigger: AGACCTGTGCACCAAGGTGCAGAGTGGCACCCACCC...CCAATCCCTGTGCTCAAGGGATCCTCTCTCTCCAGACTCGGGTGCTGCGGCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GGTCTCAGGAAAACAAGGCTCGGCTGTAGAGAACGTGGCAGTGAGGCCAGTGCACCAGAGCGGCCCAGCTaGAGCCTCCGGGTGACAAAG +
Preference number: 4 (lower is better)
Translates to: GLRKTRLGCRERGSEASAPERPS*SLRVTK
Trigger: CTTTGTCACCCGGAGGCTGCAGCTGGGCCGCTCTGG...TGCACTGGCCTCACTGCCACGTTCTCTACAGCCGAGCCTTGTTTTCCTGAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS-3UTR GCA 90 bp AGGAAAACAAGGCTCGGCTGTAGAGAACGTGGCAGTGAGGCCAGTGCAGCCGCAGTGCTGCTGGGTGGGTaGCACTCTGCACCTTGGTGC +
Preference number: 4 (lower is better)
Translates to: RKTRLGCRERGSEASAAAVLLGG*HSAPWC
Trigger: GCACCAAGGTGCAGAGTGGCACCCACCCAGCAGCAC...TGCGGCTGCACTGGCCTCACTGCCACGTTCTCTACAGCCGAGCCTTGTTTTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR TCA 90 bp ACATGTAAGGTCCCTAGGGGCTGTGTGACAGCCTGGAAAGTAAGACACTGGGGAGCTGCAGCCTCCGGGTaGCAAAGGGTCCAGGGGCGA +
Preference number: 4 (lower is better)
Translates to: TCKVPRGCVTAWKVRHWGAAASG*QRVQGR
Trigger: TCGCCCCTGGACCCTTTGTCACCCGGAGGCTGCAGC...TCCCCAGTGTCTTACTTTCCAGGCTGTCACACAGCCCCTAGGGACCTTACATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS-3UTR TCA 90 bp GCTTCTTGGTCCCACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTGCTGCAGCCTCCGGGTaGCAAAGGGTCCAGGGGCGA +
Preference number: 4 (lower is better)
Translates to: ASWSHTTTLGDCRTMPSFAAASG*QRVQGR
Trigger: TCGCCCCTGGACCCTTTGTCACCCGGAGGCTGCAGC...AAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCAAGAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS-3UTR TCA 90 bp GCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACACTAGGTGACGGGGCAGGTAAGGTGTaGGGAGCATGGCCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: AHRQLTGASWSHTTTLGDGAGKV*GAWPGS
Trigger: TGAGCCAGGCCATGCTCCTCACACCTTACCTGCCCC...GTCACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR TCA 90 bp GGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACACTAGGTGGGGCAGGTAAGGTGTaGGGAGCATGGCCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: GAHRQLTGASWSHTTTLGGAGKV*GAWPGS
Trigger: TGAGCCAGGCCATGCTCCTCACACCTTACCTGCCCC...ACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACCACTCTGCACCTTGGTaGACAGGTCTGTCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: ASHTSGAHRQLTGASWSHHSAPW*TGLSAA
Trigger: GGCAGCTGACAGACCTGTGCACCAAGGTGCAGAGTG...GTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp TGGTCCCACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGGTGCTGCTGGGTGGGTaGCACTCTGCACCTTGGTGC +
Preference number: 4 (lower is better)
Translates to: WSHTTTLGDCRTMPSFPWVLLGG*HSAPWC
Trigger: GCACCAAGGTGCAGAGTGGCACCCACCCAGCAGCAC...CCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GGTCTCAGGAAAACAAGGCTCGGCTGTAGAGAACGTGGCAGTGAGGCCAGTGCACAGGACGTCCTGTGCTaGTGGGTGGGTGCCACTCTG +
Preference number: 4 (lower is better)
Translates to: GLRKTRLGCRERGSEASAQDVLC*WVGATL
Trigger: CAGAGTGGCACCCACCCAGCAGCACAGGACGTCCTG...TGCACTGGCCTCACTGCCACGTTCTCTACAGCCGAGCCTTGTTTTCCTGAGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp TGGTCCCACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGAGCCAGGACGTCCTGTaGTGCTGGGTGGGTGCCACT +
Preference number: 4 (lower is better)
Translates to: WSHTTTLGDCRTMPSFPWSQDVL*CWVGAT
Trigger: AGTGGCACCCACCCAGCAGCACAGGACGTCCTGGCT...CCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACCTCAAGGCTCTCATCTaGGAGGCTTGGAGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: ASHTSGAHRQLTGASWSHLKALI*EAWSWL
Trigger: CAGCCAGCTCCAAGCCTCGCAGATGAGAGCCTTGAG...GTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp ACAGCCTGGAAAGTAAGACACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCAAGCAGGACCACGTTGTaGAGCAAGAGGGACAGCTCG +
Preference number: 4 (lower is better)
Translates to: TAWKVRHWGQTQGGARQPSRTTL*SKRDSS
Trigger: CGAGCTGTCCCTCTTGCTGCACAACGTGGTCCTGCT...TGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp ACAGCCTGGAAAGTAAGACACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCATCCTGTGCAGTCAGCTaGCCAATCCCCAGCTTTGCC +
Preference number: 4 (lower is better)
Translates to: TAWKVRHWGQTQGGARQPSCAVS*PIPSFA
Trigger: GGCAAAGCTGGGGATTGGCCAGCTGACTGCACAGGA...TGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR TCA 90 bp ACAGCCTGGAAAGTAAGACACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCAGCCTTCGGAGAAAGGTaGAGCTTTGAAGACCGAGGG +
Preference number: 4 (lower is better)
Translates to: TAWKVRHWGQTQGGARQPAFGER*SFEDRG
Trigger: CCCTCGGTCTTCAAAGCTTCACCTTTCTCCGAAGGC...TGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS-3UTR GCA 90 bp GGTAAAAAGCACTCAGCCAAGACAACACCCCAGAGCTTCGTGGGCTCCTTGCCGGGGTGGGTGCCACTCTaGACCTTGGTGCACAGGTCT +
Preference number: 4 (lower is better)
Translates to: GKKHSAKTTPQSFVGSLPGWVPL*TLVHRS
Trigger: AGACCTGTGCACCAAGGTGCAGAGTGGCACCCACCC...CGGCAAGGAGCCCACGAAGCTCTGGGGTGTTGTCTTGGCTGAGTGCTTTTTACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACACTAGGTGCCAATCCCCAGCTTTaGCAGAGCCCTGTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: GAHRQLTGASWSHTTTLGANPQL*QSPVQL
Trigger: CAGCTGGACAGGGCTCTGGCAAAGCTGGGGATTGGC...ACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp TGGTCCCACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGGCCAATCCCCAGCTTTaGCAGAGCCCTGTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: WSHTTTLGDCRTMPSFPWANPQL*QSPVQL
Trigger: CAGCTGGACAGGGCTCTGGCAAAGCTGGGGATTGGC...CCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp GGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACACTAGGTGTGATGACTTCCGAGTaGGACCGCCTCCGGAGACCA +
Preference number: 4 (lower is better)
Translates to: GAHRQLTGASWSHTTTLGVMTSE*DRLRRP
Trigger: TGGTCTCCGGAGGCGGTCCCACTCGGAAGTCATCAC...ACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp GCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACACTAGGTGACGTGATGACTTCCGAGTaGGACCGCCTCCGGAGACCA +
Preference number: 4 (lower is better)
Translates to: AHRQLTGASWSHTTTLGDVMTSE*DRLRRP
Trigger: TGGTCTCCGGAGGCGGTCCCACTCGGAAGTCATCAC...GTCACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR TCA 90 bp ACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTCTCCGGAGTTTCTCATaGGAAACAAAAGTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: TGDKRREGPGSHSFSPPPLRSFS*ETKVLA
Trigger: GGCCAGCACTTTTGTTTCTCATGAGAAACTCCGGAG...AGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR TCA 90 bp ACATGTAAGGTCCCTAGGGGCTGTGTGACAGCCTGGAAAGTAAGACACTGGGGAGGGGCAGGTAAGGTGTaGGGAGCATGGCCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: TCKVPRGCVTAWKVRHWGGAGKV*GAWPGS
Trigger: TGAGCCAGGCCATGCTCCTCACACCTTACCTGCCCC...TCCCCAGTGTCTTACTTTCCAGGCTGTCACACAGCCCCTAGGGACCTTACATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GCTTCTTGGTCCCACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCAGGACGTCCTGTGCTaGTGGGTGGGTGCCACTCTG +
Preference number: 4 (lower is better)
Translates to: ASWSHTTTLGDCRTMPSFQDVLC*WVGATL
Trigger: CAGAGTGGCACCCACCCAGCAGCACAGGACGTCCTG...AAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCAAGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACCGATTTCACTTCCTGTaGAGTCAGCTGGCCAATCCC +
Preference number: 4 (lower is better)
Translates to: ASHTSGAHRQLTGASWSHRFHFL*SQLANP
Trigger: GGGATTGGCCAGCTGACTGCACAGGAAGTGAAATCG...GTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GGTAAAAAGCACTCAGCCAAGACAACACCCCAGAGCTTCGTGGGCTCCTTGCCGAGCAGGACCACGTTGTaGAGCAAGAGGGACAGCTCG +
Preference number: 4 (lower is better)
Translates to: GKKHSAKTTPQSFVGSLPSRTTL*SKRDSS
Trigger: CGAGCTGTCCCTCTTGCTGCACAACGTGGTCCTGCT...CGGCAAGGAGCCCACGAAGCTCTGGGGTGTTGTCTTGGCTGAGTGCTTTTTACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp TGGTCCCACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGCTCATCTGCGAGGCTTaGAGCTGGCTGAAGCCCAAG +
Preference number: 4 (lower is better)
Translates to: WSHTTTLGDCRTMPSFPWLICEA*SWLKPK
Trigger: CTTGGGCTTCAGCCAGCTCCAAGCCTCGCAGATGAG...CCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp GACAGCCTGGAAAGTAAGACACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCTCTCAAGGTAGTTGGTaGAGAGCAGGACCACGTTGT +
Preference number: 4 (lower is better)
Translates to: DSLESKTLGTNAGRGQAASQGSW*RAGPRC
Trigger: ACAACGTGGTCCTGCTCTCCACCAACTACCTTGAGA...GGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp GACAGCCTGGAAAGTAAGACACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCTTGTCTCAAGGTAGTTaGTGGAGAGCAGGACCACGT +
Preference number: 4 (lower is better)
Translates to: DSLESKTLGTNAGRGQAALSQGS*WRAGPR
Trigger: ACGTGGTCCTGCTCTCCACCAACTACCTTGAGACAA...GGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGTGTCTTACTTTCCAGGCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR TCA 90 bp AGGACGTCCTGTGCTGCTGGGTGGGTGCCACTCTGCACCTTGCAAGAAATGAGTGCCTTCGGAGAAAGGTaGAGCTTTGAAGACCGAGGG +
Preference number: 4 (lower is better)
Translates to: RTSCAAGWVPLCTLQEMSAFGER*SFEDRG
Trigger: CCCTCGGTCTTCAAAGCTTCACCTTTCTCCGAAGGC...ACTCATTTCTTGCAAGGTGCAGAGTGGCACCCACCCAGCAGCACAGGACGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
CDS-3UTR GCA 90 bp CACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGGGTTCACACTCTGCACCTTGGTaGACAGGTCTGTCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: HTTTLGDCRTMPSFPWGSHSAPW*TGLSAA
Trigger: GGCAGCTGACAGACCTGTGCACCAAGGTGCAGAGTG...TGAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp AGATCTCAAGGTCCTCTTCGGCTACATGAGACACGGGGTCTCAGGAAAACAAGGCAGGACGTCCTGTGCTaGTGGGTGGGTGCCACTCTG +
Preference number: 4 (lower is better)
Translates to: RSQGPLRLHETRGLRKTRQDVLC*WVGATL
Trigger: CAGAGTGGCACCCACCCAGCAGCACAGGACGTCCTG...CCTTGTTTTCCTGAGACCCCGTGTCTCATGTAGCCGAAGAGGACCTTGAGATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp TGGGCTCCTTGCCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGGAAGACCAGATAAAAGACCAGGTAGTTaGCAAAGGGTGGAATGGAGA +
Preference number: 4 (lower is better)
Translates to: WAPCRCSSAWELGVGRPDKRPGS*QRVEWR
Trigger: TCTCCATTCCACCCTTTGCCAACTACCTGGTCTTTT...ATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS-3UTR CCA 90 bp ACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACACTCATCTGCGAGGCTTaGAGCTGGCTGAAGCCCAAG +
Preference number: 4 (lower is better)
Translates to: TSGAHRQLTGASWSHTTTLICEA*SWLKPK
Trigger: CTTGGGCTTCAGCCAGCTCCAAGCCTCGCAGATGAG...TGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp CACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGGGTTCATCCTGTGCAGTCAGCTaGCCAATCCCCAGCTTTGCC +
Preference number: 4 (lower is better)
Translates to: HTTTLGDCRTMPSFPWGSSCAVS*PIPSFA
Trigger: GGCAAAGCTGGGGATTGGCCAGCTGACTGCACAGGA...TGAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp TCCGCTGCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTTGTCTCAAGGTAGTTaGTGGAGAGCAGGACCACGT +
Preference number: 4 (lower is better)
Translates to: SAASHTSGAHRQLTGASWLSQGS*WRAGPR
Trigger: ACGTGGTCCTGCTCTCCACCAACTACCTTGAGACAA...CCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGCAGCGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp TGGGCTCCTTGCCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGGAAGACCAGATCATGAGAAACAAAAGTaGTGGCCCTTCTTAGATGTG +
Preference number: 4 (lower is better)
Translates to: WAPCRCSSAWELGVGRPDHEKQK*WPFLDV
Trigger: CACATCTAAGAAGGGCCAGCACTTTTGTTTCTCATG...ATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GCACACATGGGTTTGTTAGGCTCAAGCTGTGAAGGAATGTCTATAGCTCCCAGGAGCCAGGACGTCCTGTaGTGCTGGGTGGGTGCCACT +
Preference number: 4 (lower is better)
Translates to: AHMGLLGSSCEGMSIAPRSQDVL*CWVGAT
Trigger: AGTGGCACCCACCCAGCAGCACAGGACGTCCTGGCT...CCTGGGAGCTATAGACATTCCTTCACAGCTTGAGCCTAACAAACCCATGTGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp AGATCTCAAGGTCCTCTTCGGCTACATGAGACACGGGGTCTCAGGAAAACAAGGGCCAATCCCCAGCTTTaGCAGAGCCCTGTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: RSQGPLRLHETRGLRKTRANPQL*QSPVQL
Trigger: CAGCTGGACAGGGCTCTGGCAAAGCTGGGGATTGGC...CCTTGTTTTCCTGAGACCCCGTGTCTCATGTAGCCGAAGAGGACCTTGAGATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
3UTR CAA 72 bp CTCCTGGTCTCCCAGGGCTGGGCAGTAATTAGTACCTaGTGCGTTTTTGACCCACAGCCTAGAGAAGGCAGC +
Preference number: 4 (lower is better)
Translates to: LLVSQGWAVIST*CVFDPQPREGS
Trigger: GCTGCCTTCTCTAGGCTGTGGGTCAAAAACGCACAAGGTACTAATTACTGCCCAGCCCTGGGAGACCAGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000230294.2
CDS-3UTR TCA 90 bp GCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACACTAGGTGACCTCCGGAGTTTCTCATaGGAAACAAAAGTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: AHRQLTGASWSHTTTLGDLRSFS*ETKVLA
Trigger: GGCCAGCACTTTTGTTTCTCATGAGAAACTCCGGAG...GTCACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTTTAGAATGTTCCCATAAACACTCTGCACCTTGGTaGACAGGTCTGTCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: EGPGSHSFSPPPLECSHKHSAPW*TGLSAA
Trigger: GGCAGCTGACAGACCTGTGCACCAAGGTGCAGAGTG...TTTATGGGAACATTCTAAAGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GCACACATGGGTTTGTTAGGCTCAAGCTGTGAAGGAATGTCTATAGCTCCCAGGGGGTGGGTGCCACTCTaGACCTTGGTGCACAGGTCT +
Preference number: 4 (lower is better)
Translates to: AHMGLLGSSCEGMSIAPRGWVPL*TLVHRS
Trigger: AGACCTGTGCACCAAGGTGCAGAGTGGCACCCACCC...CCTGGGAGCTATAGACATTCCTTCACAGCTTGAGCCTAACAAACCCATGTGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTTTAGAATGTTCCCATAAACTCAAGGCTCTCATCTaGGAGGCTTGGAGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: EGPGSHSFSPPPLECSHKLKALI*EAWSWL
Trigger: CAGCCAGCTCCAAGCCTCGCAGATGAGAGCCTTGAG...TTTATGGGAACATTCTAAAGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp ACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACACGATTTCACTTCCTGTaGAGTCAGCTGGCCAATCCC +
Preference number: 4 (lower is better)
Translates to: TSGAHRQLTGASWSHTTTRFHFL*SQLANP
Trigger: GGGATTGGCCAGCTGACTGCACAGGAAGTGAAATCG...TGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp GCACAAAGACTCGGTAAAAAGCACTCAGCCAAGACAACACCCCAGAGCTTCGTGTCCTGTGCAGTCAGCTaGCCAATCCCCAGCTTTGCC +
Preference number: 4 (lower is better)
Translates to: AQRLGKKHSAKTTPQSFVSCAVS*PIPSFA
Trigger: GGCAAAGCTGGGGATTGGCCAGCTGACTGCACAGGA...CACGAAGCTCTGGGGTGTTGTCTTGGCTGAGTGCTTTTTACCGAGTCTTTGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp GGTAAAAAGCACTCAGCCAAGACAACACCCCAGAGCTTCGTGGGCTCCTTGCCGTCTCAAGGTAGTTGGTaGAGAGCAGGACCACGTTGT +
Preference number: 4 (lower is better)
Translates to: GKKHSAKTTPQSFVGSLPSQGSW*RAGPRC
Trigger: ACAACGTGGTCCTGCTCTCCACCAACTACCTTGAGA...CGGCAAGGAGCCCACGAAGCTCTGGGGTGTTGTCTTGGCTGAGTGCTTTTTACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp GGTAAAAAGCACTCAGCCAAGACAACACCCCAGAGCTTCGTGGGCTCCTTGCCGTTGTCTCAAGGTAGTTaGTGGAGAGCAGGACCACGT +
Preference number: 4 (lower is better)
Translates to: GKKHSAKTTPQSFVGSLPLSQGS*WRAGPR
Trigger: ACGTGGTCCTGCTCTCCACCAACTACCTTGAGACAA...CGGCAAGGAGCCCACGAAGCTCTGGGGTGTTGTCTTGGCTGAGTGCTTTTTACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GCACACATGGGTTTGTTAGGCTCAAGCTGTGAAGGAATGTCTATAGCTCCCAGGAGCAGGACCACGTTGTaGAGCAAGAGGGACAGCTCG +
Preference number: 4 (lower is better)
Translates to: AHMGLLGSSCEGMSIAPRSRTTL*SKRDSS
Trigger: CGAGCTGTCCCTCTTGCTGCACAACGTGGTCCTGCT...CCTGGGAGCTATAGACATTCCTTCACAGCTTGAGCCTAACAAACCCATGTGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp CACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGGGTTCAGTAGTTGGCAAAGGGTaGAATGGAGATGAGGCCAAC +
Preference number: 4 (lower is better)
Translates to: HTTTLGDCRTMPSFPWGSVVGKG*NGDEAN
Trigger: GTTGGCCTCATCTCCATTCCACCCTTTGCCAACTAC...TGAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000229648.2
CDS-3UTR CCA 90 bp ACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGGGTTCACTCAGCGTAGTTGGCAAAGGGTaGAATGGAGATGAGGCCAAC +
Preference number: 4 (lower is better)
Translates to: TTLGDCRTMPSFPWGSLSVVGKG*NGDEAN
Trigger: GTTGGCCTCATCTCCATTCCACCCTTTGCCAACTAC...GCTGAGTGAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
CDS-3UTR CCA 90 bp ACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACAGTAGTTGGCAAAGGGTaGAATGGAGATGAGGCCAAC +
Preference number: 4 (lower is better)
Translates to: TSGAHRQLTGASWSHTTTVVGKG*NGDEAN
Trigger: GTTGGCCTCATCTCCATTCCACCCTTTGCCAACTAC...TGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
ENSMUST00000229648.2
CDS-3UTR GCA 90 bp ACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACATTGGGGGTCCAGAAATaGTTGACTAGCAGTTGCCTA +
Preference number: 4 (lower is better)
Translates to: TSGAHRQLTGASWSHTTTLGVQK*LTSSCL
Trigger: TAGGCAACTGCTAGTCAAGCATTTCTGGACCCCCAA...TGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp TCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCCATGAGAAACAAAAGTaGTGGCCCTTCTTAGATGTG +
Preference number: 4 (lower is better)
Translates to: SHTSGAHRQLTGASWSHTHEKQK*WPFLDV
Trigger: CACATCTAAGAAGGGCCAGCACTTTTGTTTCTCATG...GGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp GAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTTTAGAATGTTCCCATAAACGATTTCACTTCCTGTaGAGTCAGCTGGCCAATCCC +
Preference number: 4 (lower is better)
Translates to: EGPGSHSFSPPPLECSHKRFHFL*SQLANP
Trigger: GGGATTGGCCAGCTGACTGCACAGGAAGTGAAATCG...TTTATGGGAACATTCTAAAGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp AGGACGTCCTGTGCTGCTGGGTGGGTGCCACTCTGCACCTTGCAAGAAATGAGTAAAAGACCAGGTAGTTaGCAAAGGGTGGAATGGAGA +
Preference number: 4 (lower is better)
Translates to: RTSCAAGWVPLCTLQEMSKRPGS*QRVEWR
Trigger: TCTCCATTCCACCCTTTGCCAACTACCTGGTCTTTT...ACTCATTTCTTGCAAGGTGCAGAGTGGCACCCACCCAGCAGCACAGGACGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
CDS-3UTR GCA 90 bp GCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACACTAGGTGACTGCTTGACTAGCAGTTaGCTAGGAAACAGGTACATT +
Preference number: 4 (lower is better)
Translates to: AHRQLTGASWSHTTTLGDCLTSS*LGNRYI
Trigger: AATGTACCTGTTTCCTAGGCAACTGCTAGTCAAGCA...GTCACCTAGTGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
CDS-3UTR CCA 90 bp GCACACATGGGTTTGTTAGGCTCAAGCTGTGAAGGAATGTCTATAGCTCCCAGGTCTCAAGGTAGTTGGTaGAGAGCAGGACCACGTTGT +
Preference number: 4 (lower is better)
Translates to: AHMGLLGSSCEGMSIAPRSQGSW*RAGPRC
Trigger: ACAACGTGGTCCTGCTCTCCACCAACTACCTTGAGA...CCTGGGAGCTATAGACATTCCTTCACAGCTTGAGCCTAACAAACCCATGTGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp ACATGTAAGGTCCCTAGGGGCTGTGTGACAGCCTGGAAAGTAAGACACTGGGGACATGAGAAACAAAAGTaGTGGCCCTTCTTAGATGTG +
Preference number: 4 (lower is better)
Translates to: TCKVPRGCVTAWKVRHWGHEKQK*WPFLDV
Trigger: CACATCTAAGAAGGGCCAGCACTTTTGTTTCTCATG...TCCCCAGTGTCTTACTTTCCAGGCTGTCACACAGCCCCTAGGGACCTTACATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR GCA 90 bp TCCCAGGGCTGGGCAGTAATTAGTACCTTGTGCGTTTTTGACCCACAGCCTAGATGCTTGACTAGCAGTTaGCTAGGAAACAGGTACATT +
Preference number: 4 (lower is better)
Translates to: SQGWAVISTLCVFDPQPRCLTSS*LGNRYI
Trigger: AATGTACCTGTTTCCTAGGCAACTGCTAGTCAAGCA...TCTAGGCTGTGGGTCAAAAACGCACAAGGTACTAATTACTGCCCAGCCCTGGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037001.10
CDS-3UTR TCA 90 bp TCCCAGGGCTGGGCAGTAATTAGTACCTTGTGCGTTTTTGACCCACAGCCTAGATCTGTATTCCTTTCATaGAGGTTGTGTATAAGGCAT +
Preference number: 4 (lower is better)
Translates to: SQGWAVISTLCVFDPQPRSVFLS*RLCIRH
Trigger: ATGCCTTATACACAACCTTCATGAAAGGAATACAGA...TCTAGGCTGTGGGTCAAAAACGCACAAGGTACTAATTACTGCCCAGCCCTGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037001.10
CDS-3UTR CCA 90 bp GACTTTATAGGACCTAAGTATTACATCACAATAAAAGTTCAGTACCAGAGATGCGTGATGACTTCCGAGTaGGACCGCCTCCGGAGACCA +
Preference number: 4 (lower is better)
Translates to: DFIGPKYYITIKVQYQRCVMTSE*DRLRRP
Trigger: TGGTCTCCGGAGGCGGTCCCACTCGGAAGTCATCAC...GCATCTCTGGTACTGAACTTTTATTGTGATGTAATACTTAGGTCCTATAAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR CCA 90 bp GACTTTATAGGACCTAAGTATTACATCACAATAAAAGTTCAGTACCAGAGATGCCTCATCTGCGAGGCTTaGAGCTGGCTGAAGCCCAAG +
Preference number: 4 (lower is better)
Translates to: DFIGPKYYITIKVQYQRCLICEA*SWLKPK
Trigger: CTTGGGCTTCAGCCAGCTCCAAGCCTCGCAGATGAG...GCATCTCTGGTACTGAACTTTTATTGTGATGTAATACTTAGGTCCTATAAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR TCA 90 bp GACTTTATAGGACCTAAGTATTACATCACAATAAAAGTTCAGTACCAGAGATGCCTCCGGAGTTTCTCATaGGAAACAAAAGTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: DFIGPKYYITIKVQYQRCLRSFS*ETKVLA
Trigger: GGCCAGCACTTTTGTTTCTCATGAGAAACTCCGGAG...GCATCTCTGGTACTGAACTTTTATTGTGATGTAATACTTAGGTCCTATAAAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS TCA 90 bp GGGCTCGCCACGCAGGGCCAGAGCGGCCCAGCTGCAGCCTCCGGGTaGCAAAGGGTCCAGGGGCGACAGTCGAACCCCACAGAGCAGCCC +
Preference number: 5 (lower is better)
Translates to: GLATQGQSGPAAASG*QRVQGRQSNPTEQP
Trigger: GGGCTGCTCTGTGGGGTTCGACTGTCGCCCCTGGACCCTTTGTCACCCGGAGGCTGCAGCTGGGCCGCTCTGGCCCTGCGTGGCGAGCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS GCA 90 bp TTTGAAGACCGAGGGGCTCGCCACGCAGGGCCAGAGCGGCCCAGCTaGAGCCTCCGGGTGACAAAGGGTCCAGGGGCGACAGTCGAACCC +
Preference number: 5 (lower is better)
Translates to: FEDRGARHAGPERPS*SLRVTKGPGATVEP
Trigger: GGGTTCGACTGTCGCCCCTGGACCCTTTGTCACCCGGAGGCTGCAGCTGGGCCGCTCTGGCCCTGCGTGGCGAGCCCCTCGGTCTTCAAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS-3UTR CAA 90 bp TGGGCTCCTTGCCGGTGTTCCAGCGCCTGGGAGCTGGGGGTAGGAAGACCAGATGAGAAAGGTGAAGCTTaGAAGACCGAGGGGCTCGCC +
Preference number: 5 (lower is better)
Translates to: WAPCRCSSAWELGVGRPDEKGEA*KTEGLA
Trigger: GGCGAGCCCCTCGGTCTTCAAAGCTTCACCTTTCTC...ATCTGGTCTTCCTACCCCCAGCTCCCAGGCGCTGGAACACCGGCAAGGAGCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS-3UTR CAA 90 bp GCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACGGCCAATCCCCAGCTTaGCCAGAGCCCTGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: ASHTSGAHRQLTGASWSHGQSPA*PEPCPA
Trigger: AGCTGGACAGGGCTCTGGCAAAGCTGGGGATTGGCC...GTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp GCAGCCGCAGCACCCGAGTCTGGAGAGAGAGGATCCCTTGAGCACAGGGATTGGGAGAGCAGGACCACGTaGTGCAGCAAGAGGGACAGC +
Preference number: 5 (lower is better)
Translates to: AAAAPESGERGSLEHRDWESRTT*CSKRDS
Trigger: GCTGTCCCTCTTGCTGCACAACGTGGTCCTGCTCTC...CCAATCCCTGTGCTCAAGGGATCCTCTCTCTCCAGACTCGGGTGCTGCGGCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp ACCCACTCCGCTGCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTCATCTGCGAGGCTaGGAGCTGGCTGAAGCCCAA +
Preference number: 5 (lower is better)
Translates to: THSAASHTSGAHRQLTGASHLRG*ELAEAQ
Trigger: TTGGGCTTCAGCCAGCTCCAAGCCTCGCAGATGAGA...AGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGCAGCGGAGTGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp GCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACGAGAGCAGGACCACGTaGTGCAGCAAGAGGGACAGC +
Preference number: 5 (lower is better)
Translates to: ASHTSGAHRQLTGASWSHESRTT*CSKRDS
Trigger: GCTGTCCCTCTTGCTGCACAACGTGGTCCTGCTCTC...GTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS TCA 90 bp AGAAATCAAGTTCTTCACGTCCGCCTTCGGAGAAAGGTGAAGCTTTaGAGACCGAGGGGCTCGCCACGCAGGGCCAGAGCGGCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: RNQVLHVRLRRKVKL*RPRGSPRRARAAQL
Trigger: CAGCTGGGCCGCTCTGGCCCTGCGTGGCGAGCCCCTCGGTCTTCAAAGCTTCACCTTTCTCCGAAGGCGGACGTGAAGAACTTGATTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS CCA 90 bp GAGCCAGGACGTCCTGTGCTGCTGGGTGGGTGCCACTCTGCACCTTaGTGCACAGGTCTGTCAGCTGCCTCCGGAGTTTCTCATGAGAAA +
Preference number: 5 (lower is better)
Translates to: EPGRPVLLGGCHSAP*CTGLSAASGVSHEK
Trigger: TTTCTCATGAGAAACTCCGGAGGCAGCTGACAGACCTGTGCACCAAGGTGCAGAGTGGCACCCACCCAGCAGCACAGGACGTCCTGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp TCCGCTGCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCTCATCTGCGAGGCTaGGAGCTGGCTGAAGCCCAA +
Preference number: 5 (lower is better)
Translates to: SAASHTSGAHRQLTGASWSHLRG*ELAEAQ
Trigger: TTGGGCTTCAGCCAGCTCCAAGCCTCGCAGATGAGA...CCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGCAGCGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp GCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACTCTCATCTGCGAGGCTaGGAGCTGGCTGAAGCCCAA +
Preference number: 5 (lower is better)
Translates to: ASHTSGAHRQLTGASWSHSHLRG*ELAEAQ
Trigger: TTGGGCTTCAGCCAGCTCCAAGCCTCGCAGATGAGA...GTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS GCA 90 bp CAAGGGGTAGGTAGAGAAGCAATCTCTGAGAGCCAGGACGTCCTGTaGTGCTGGGTGGGTGCCACTCTGCACCTTGGTGCACAGGTCTGT +
Preference number: 5 (lower is better)
Translates to: QGVGREAISESQDVL*CWVGATLHLGAQVC
Trigger: ACAGACCTGTGCACCAAGGTGCAGAGTGGCACCCACCCAGCAGCACAGGACGTCCTGGCTCTCAGAGATTGCTTCTCTACCTACCCCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp CACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGGGTTCAGGCCAATCCCCAGCTTaGCCAGAGCCCTGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: HTTTLGDCRTMPSFPWGSGQSPA*PEPCPA
Trigger: AGCTGGACAGGGCTCTGGCAAAGCTGGGGATTGGCC...TGAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp TGGTCCCACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGGAGAGCAGGACCACGTaGTGCAGCAAGAGGGACAGC +
Preference number: 5 (lower is better)
Translates to: WSHTTTLGDCRTMPSFPWESRTT*CSKRDS
Trigger: GCTGTCCCTCTTGCTGCACAACGTGGTCCTGCTCTC...CCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp GCACAAAGACTCGGTAAAAAGCACTCAGCCAAGACAACACCCCAGAGCTTCGTGGGCCAATCCCCAGCTTaGCCAGAGCCCTGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: AQRLGKKHSAKTTPQSFVGQSPA*PEPCPA
Trigger: AGCTGGACAGGGCTCTGGCAAAGCTGGGGATTGGCC...CACGAAGCTCTGGGGTGTTGTCTTGGCTGAGTGCTTTTTACCGAGTCTTTGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp GCTTCTTGGTCCCACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTGAGAAAGGTGAAGCTTaGAAGACCGAGGGGCTCGCC +
Preference number: 5 (lower is better)
Translates to: ASWSHTTTLGDCRTMPSFEKGEA*KTEGLA
Trigger: GGCGAGCCCCTCGGTCTTCAAAGCTTCACCTTTCTC...AAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCAAGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS-3UTR CAA 90 bp ACTGGGGACAAACGCAGGGAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTATTCTTCTAGCCTTTTaGCCATCAGCCCATAACATC +
Preference number: 5 (lower is better)
Translates to: TGDKRREGPGSHSFSPPPILLAF*PSAHNI
Trigger: GATGTTATGGGCTGATGGCAAAAAGGCTAGAAGAAT...AGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTCCCTGCGTTTGTCCCCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037001.10
CDS-3UTR CAA 90 bp ACCCACTCCGCTGCCTCCCACACTAGTGGTGCGCACAGACAGCTGACAGGTGCTATTCTTCTAGCCTTTTaGCCATCAGCCCATAACATC +
Preference number: 5 (lower is better)
Translates to: THSAASHTSGAHRQLTGAILLAF*PSAHNI
Trigger: GATGTTATGGGCTGATGGCAAAAAGGCTAGAAGAAT...AGCACCTGTCAGCTGTCTGTGCGCACCACTAGTGTGGGAGGCAGCGGAGTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
CDS TCA 90 bp GAGGCCAACGAAGAGACACTTGGTGATATCTCGTCGGAACTTTCATaGAGGTTGTGTATAAGGCATAGAAGCGGGGGAAATGACGCCCCA +
Preference number: 5 (lower is better)
Translates to: EANEETLGDISSELS*RLCIRHRSGGNDAP
Trigger: TGGGGCGTCATTTCCCCCGCTTCTATGCCTTATACACAACCTTCATGAAAGTTCCGACGAGATATCACCAAGTGTCTCTTCGTTGGCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2
CDS-3UTR CAA 90 bp ACTAGTGGTGCGCACAGACAGCTGACAGGTGCTTCTTGGTCCCACACCACTACAGTCCAAGAAATCAATTaGTTGTTTGGGGGTCCAGAA +
Preference number: 5 (lower is better)
Translates to: TSGAHRQLTGASWSHTTTVQEIN*LFGGPE
Trigger: TTCTGGACCCCCAAACAACAAATTGATTTCTTGGAC...TGTAGTGGTGTGGGACCAAGAAGCACCTGTCAGCTGTCTGTGCGCACCACTAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp CACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTCCGTGGGGTTCAGTCCAAGAAATCAATTaGTTGTTTGGGGGTCCAGAA +
Preference number: 5 (lower is better)
Translates to: HTTTLGDCRTMPSFPWGSVQEIN*LFGGPE
Trigger: TTCTGGACCCCCAAACAACAAATTGATTTCTTGGAC...TGAACCCCACGGAAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp GCTTCTTGGTCCCACACCACTACACTAGGTGACTGCAGGACAATGCCGTCCTTTGTCCAAGAAATCAATTaGTTGTTTGGGGGTCCAGAA +
Preference number: 5 (lower is better)
Translates to: ASWSHTTTLGDCRTMPSFVQEIN*LFGGPE
Trigger: TTCTGGACCCCCAAACAACAAATTGATTTCTTGGAC...AAAGGACGGCATTGTCCTGCAGTCACCTAGTGTAGTGGTGTGGGACCAAGAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS-3UTR CAA 90 bp GAGGGGCCAGGCAGCCATTCTTTCTCACCGCCTCCTTTAGAATGTTCCCATAAACAAGAAATCAATTTGTaGTTTGGGGGTCCAGAAATG +
Preference number: 5 (lower is better)
Translates to: EGPGSHSFSPPPLECSHKQEINL*FGGPEM
Trigger: CATTTCTGGACCCCCAAACAACAAATTGATTTCTTG...TTTATGGGAACATTCTAAAGGAGGCGGTGAGAAAGAATGGCTGCCTGGCCCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000230294.2
CDS GCA 72 bp CGAGGGGCTCGCCACGCAGGGCCAGAGCGGCCCAGCTaGAGCCTCCGGGTGACAAAGGGTCCAGGGGCGACA +
Preference number: 6 (lower is better)
Translates to: RGARHAGPERPS*SLRVTKGPGAT
Trigger: TGTCGCCCCTGGACCCTTTGTCACCCGGAGGCTGCAGCTGGGCCGCTCTGGCCCTGCGTGGCGAGCCCCTCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS TCA 72 bp GTTCTTCACGTCCGCCTTCGGAGAAAGGTGAAGCTTTaGAGACCGAGGGGCTCGCCACGCAGGGCCAGAGCG +
Preference number: 6 (lower is better)
Translates to: VLHVRLRRKVKL*RPRGSPRRARA
Trigger: CGCTCTGGCCCTGCGTGGCGAGCCCCTCGGTCTTCAAAGCTTCACCTTTCTCCGAAGGCGGACGTGAAGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS CCA 72 bp CGTCCTGTGCTGCTGGGTGGGTGCCACTCTGCACCTTaGTGCACAGGTCTGTCAGCTGCCTCCGGAGTTTCT +
Preference number: 6 (lower is better)
Translates to: RPVLLGGCHSAP*CTGLSAASGVS
Trigger: AGAAACTCCGGAGGCAGCTGACAGACCTGTGCACCAAGGTGCAGAGTGGCACCCACCCAGCAGCACAGGACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS CAA 72 bp ACGTCCTGTGCTGCTGGGTGGGTGCCACTCTGCACCTaGGTGCACAGGTCTGTCAGCTGCCTCCGGAGTTTC +
Preference number: 6 (lower is better)
Translates to: TSCAAGWVPLCT*VHRSVSCLRSF
Trigger: GAAACTCCGGAGGCAGCTGACAGACCTGTGCACCAAGGTGCAGAGTGGCACCCACCCAGCAGCACAGGACGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS CCA 72 bp CAATCTCTGAGAGCCAGGACGTCCTGTGCTGCTGGGTaGGTGCCACTCTGCACCTTGGTGCACAGGTCTGTC +
Preference number: 6 (lower is better)
Translates to: QSLRARTSCAAG*VPLCTLVHRSV
Trigger: GACAGACCTGTGCACCAAGGTGCAGAGTGGCACCCACCCAGCAGCACAGGACGTCCTGGCTCTCAGAGATTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS CCA 72 bp GAAGCAATCTCTGAGAGCCAGGACGTCCTGTGCTGCTaGGTGGGTGCCACTCTGCACCTTGGTGCACAGGTC +
Preference number: 6 (lower is better)
Translates to: EAISESQDVLCC*VGATLHLGAQV
Trigger: GACCTGTGCACCAAGGTGCAGAGTGGCACCCACCCAGCAGCACAGGACGTCCTGGCTCTCAGAGATTGCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
ENSMUST00000230294.2
CDS CAA 72 bp AGTTCTTCACGTCCGCCTTCGGAGAAAGGTGAAGCTTaGAAGACCGAGGGGCTCGCCACGCAGGGCCAGAGC +
Preference number: 6 (lower is better)
Translates to: SSSRPPSEKGEA*KTEGLATQGQS
Trigger: GCTCTGGCCCTGCGTGGCGAGCCCCTCGGTCTTCAAAGCTTCACCTTTCTCCGAAGGCGGACGTGAAGAACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS CAA 90 bp AAGAAATCAAGTTCTTCACGTCCGCCTTCGGAGAAAGGTGAAGCTTaGAAGACCGAGGGGCTCGCCACGCAGGGCCAGAGCGGCCCAGCT +
Preference number: 6 (lower is better)
Translates to: KKSSSSRPPSEKGEA*KTEGLATQGQSGPA
Trigger: AGCTGGGCCGCTCTGGCCCTGCGTGGCGAGCCCCTCGGTCTTCAAAGCTTCACCTTTCTCCGAAGGCGGACGTGAAGAACTTGATTTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS TCA 72 bp GAAATCAAGTTCTTCACGTCCGCCTTCGGAGAAAGGTaGAGCTTTGAAGACCGAGGGGCTCGCCACGCAGGG +
Preference number: 6 (lower is better)
Translates to: EIKFFTSAFGER*SFEDRGARHAG
Trigger: CCCTGCGTGGCGAGCCCCTCGGTCTTCAAAGCTTCACCTTTCTCCGAAGGCGGACGTGAAGAACTTGATTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229012.2
CDS GCA 72 bp TGTTGTTTGGGGGTCCAGAAATGCTTGACTAGCAGTTaGCTAGGAAACAGGTACATTAGCAAAAAGACCAGG +
Preference number: 6 (lower is better)
Translates to: CCLGVQKCLTSS*LGNRYISKKTR
Trigger: CCTGGTCTTTTTGCTAATGTACCTGTTTCCTAGGCAACTGCTAGTCAAGCATTTCTGGACCCCCAAACAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000037001.10
ENSMUST00000229648.2
CDS TCA 72 bp GAAGAGACACTTGGTGATATCTCGTCGGAACTTTCATaGAGGTTGTGTATAAGGCATAGAAGCGGGGGAAAT +
Preference number: 6 (lower is better)
Translates to: EETLGDISSELS*RLCIRHRSGGN
Trigger: ATTTCCCCCGCTTCTATGCCTTATACACAACCTTCATGAAAGTTCCGACGAGATATCACCAAGTGTCTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229012.2