RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LEO1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042487

Ensembl transcript IDs: ENSMUST00000048937.6

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CGTTGTCCTGGTCAGAGTCCGAGTCGGACTCAGACTCGGAATCTTTaGGCTCGGCCTCGCTCTCAGCTTCGCTCCCGAAGAGGTCCTCCA +
Preference number: 5 (lower is better)
Translates to: RCPGQSPSRTQTRNL*ARPRSQLRSRRGPP
Trigger: TGGAGGACCTCTTCGGGAGCGAAGCTGAGAGCGAGGCCGAGCGCAAAGATTCCGAGTCTGAGTCCGACTCGGACTCTGACCAGGACAACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CCA 90 bp CGGCTCCCTTCGTCCGACCTGTGGCCCTCATCGTCGTCATCGTTGTaGGCTTCAGAGCCACTGTGCTGGTCCTCGTCAGAGGGCTCATTA +
Preference number: 5 (lower is better)
Translates to: RLPSSDLWPSSSSSL*ASEPLCWSSSEGSL
Trigger: TAATGAGCCCTCTGACGAGGACCAGCACAGTGGCTCTGAAGCCCACAACGATGACGACGATGAGGGCCACAGGTCGGACGAAGGGAGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CCA 90 bp TCACTTTCGCTGCCAGAGGCGTTGCTGCCAGAAGCGCCGTTGTCCTaGTCAGAGTCCGAGTCGGACTCAGACTCGGAATCTTTGCGCTCG +
Preference number: 5 (lower is better)
Translates to: SLSLPEALLPEAPLS*SESESDSDSESLRS
Trigger: CGAGCGCAAAGATTCCGAGTCTGAGTCCGACTCGGACTCTGACCAGGACAACGGCGCTTCTGGCAGCAACGCCTCTGGCAGCGAAAGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 90 bp TACTGGGCTGTCCGGAGTCACCTCTGTCATCCTGATCACTTTCGCTaGCAGAGGCGTTGCTGCCAGAAGCGCCGTTGTCCTGGTCAGAGT +
Preference number: 5 (lower is better)
Translates to: YWAVRSHLCHPDHFR*QRRCCQKRRCPGQS
Trigger: ACTCTGACCAGGACAACGGCGCTTCTGGCAGCAACGCCTCTGGCAGCGAAAGTGATCAGGATGACAGAGGTGACTCCGGACAGCCCAGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CCA 90 bp AGGCCCCCTCCTCCTCACTGTCGTCCCCGAACAGTTCCTTGTTACTaGGCTGTCCGGAGTCACCTCTGTCATCCTGATCACTTTCGCTGC +
Preference number: 5 (lower is better)
Translates to: RPPPPHCRPRTVPCY*AVRSHLCHPDHFRC
Trigger: GCAGCGAAAGTGATCAGGATGACAGAGGTGACTCCGGACAGCCCAGTAACAAGGAACTGTTCGGGGACGACAGTGAGGAGGAGGGGGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CCA 90 bp TCAGAGCCACTGTGCTGGTCCTCGTCAGAGGGCTCATTATCCTCGTaGTCAGAGCGCTCGGAAGCCTCCGACCTATTGTCTGACCGTTCA +
Preference number: 5 (lower is better)
Translates to: SEPLCWSSSEGSLSS*SERSEASDLLSDRS
Trigger: TGAACGGTCAGACAATAGGTCGGAGGCTTCCGAGCGCTCTGACCACGAGGATAATGAGCCCTCTGACGAGGACCAGCACAGTGGCTCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS TCA 90 bp ATTATCCTCGTGGTCAGAGCGCTCGGAAGCCTCCGACCTATTGTCTaGCCGTTCAGAGTGATTGTCACTGCCACTGTGATGAGAGGCCCC +
Preference number: 5 (lower is better)
Translates to: IILVVRALGSLRPIV*PFRVIVTATVMRGP
Trigger: GGGGCCTCTCATCACAGTGGCAGTGACAATCACTCTGAACGGTCAGACAATAGGTCGGAGGCTTCCGAGCGCTCTGACCACGAGGATAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CCA 90 bp CCCTTCTCCTCCTCAGACAGCTGCTGTCTGTCATCATCAGAAATCTaGGCCCGGTCCTCGTCATCTGTGTTCTGCATTTTCTCCTCGTCG +
Preference number: 5 (lower is better)
Translates to: PFSSSDSCCLSSSEI*ARSSSSVFCIFSSS
Trigger: CGACGAGGAGAAAATGCAGAACACAGATGACGAGGACCGGGCCCAGATTTCTGATGATGACAGACAGCAGCTGTCTGAGGAGGAGAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 90 bp TCGTCATCTGTGTTCTGCATTTTCTCCTCGTCGTCGTCAGAGTTCTaGAGCTTATCCTCATCGGACCCTTGCTCCCGATCCTCGTCGTCA +
Preference number: 5 (lower is better)
Translates to: SSSVFCIFSSSSSEF*SLSSSDPCSRSSSS
Trigger: TGACGACGAGGATCGGGAGCAAGGGTCCGATGAGGATAAGCTGCAGAACTCTGACGACGACGAGGAGAAAATGCAGAACACAGATGACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 90 bp TTATCCTCATCGGACCCTTGCTCCCGATCCTCGTCGTCAGAGTTCTaGAGCTTCTCGTCATCTGACTGGTCACTTTTATCCTCTCCATCC +
Preference number: 5 (lower is better)
Translates to: LSSSDPCSRSSSSEF*SFSSSDWSLLSSPS
Trigger: GGATGGAGAGGATAAAAGTGACCAGTCAGATGACGAGAAGCTGCAGAACTCTGACGACGAGGATCGGGAGCAAGGGTCCGATGAGGATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 90 bp TTCTCCTCATCGGACACCTGCGGCTGGTCCTCATCGTCCGAATTCTaGTTCTCCTCGTCATTATCAGAAGCTACTGGATGCTCATCGTCA +
Preference number: 5 (lower is better)
Translates to: FSSSDTCGWSSSSEF*FSSSLSEATGCSSS
Trigger: TGACGATGAGCATCCAGTAGCTTCTGATAATGACGAGGAGAAGCAGAATTCGGACGATGAGGACCAGCCGCAGGTGTCCGATGAGGAGAA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 90 bp CTTCCATCTTCATCTGAGACTTGTGGCCTTTCATCGTCTGAGTTCTaGATTTTCTCCTCATCGGACACCTGCGGCTGGTCCTCATCGTCC +
Preference number: 5 (lower is better)
Translates to: LPSSSETCGLSSSEF*IFSSSDTCGWSSSS
Trigger: GGACGATGAGGACCAGCCGCAGGTGTCCGATGAGGAGAAAATGCAGAACTCAGACGATGAAAGGCCACAAGTCTCAGATGAAGATGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 90 bp CTGTCATCATCAGAAATCTGGGCCCGGTCCTCGTCATCTGTGTTCTaGATTTTCTCCTCGTCGTCGTCAGAGTTCTGCAGCTTATCCTCA +
Preference number: 5 (lower is better)
Translates to: LSSSEIWARSSSSVF*IFSSSSSEFCSLSS
Trigger: TGAGGATAAGCTGCAGAACTCTGACGACGACGAGGAGAAAATGCAGAACACAGATGACGAGGACCGGGCCCAGATTTCTGATGATGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS TCA 72 bp CCCCGCTGGTGCTGTTTCTCTCGCATCCGGCGCTGCTaGGACTCCCTCCTGATGGAGGCCCTCAGGCGTTCT +
Preference number: 6 (lower is better)
Translates to: PRWCCFSRIRRC*DSLLMEALRRS
Trigger: AGAACGCCTGAGGGCCTCCATCAGGAGGGAGTCTCAGCAGCGCCGGATGCGAGAGAAACAGCACCAGCGGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CAA 90 bp CCGTTGTCCTGGTCAGAGTCCGAGTCGGACTCAGACTCGGAATCTTaGCGCTCGGCCTCGCTCTCAGCTTCGCTCCCGAAGAGGTCCTCC +
Preference number: 6 (lower is better)
Translates to: PLSWSESESDSDSES*RSASLSASLPKRSS
Trigger: GGAGGACCTCTTCGGGAGCGAAGCTGAGAGCGAGGCCGAGCGCAAAGATTCCGAGTCTGAGTCCGACTCGGACTCTGACCAGGACAACGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CAA 72 bp CTTTCGCTGCCAGAGGCGTTGCTGCCAGAAGCGCCGTaGTCCTGGTCAGAGTCCGAGTCGGACTCAGACTCG +
Preference number: 6 (lower is better)
Translates to: LSLPEALLPEAP*SWSESESDSDS
Trigger: CGAGTCTGAGTCCGACTCGGACTCTGACCAGGACAACGGCGCTTCTGGCAGCAACGCCTCTGGCAGCGAAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 72 bp GGTCAGAGTCCGAGTCGGACTCAGACTCGGAATCTTTaGGCTCGGCCTCGCTCTCAGCTTCGCTCCCGAAGA +
Preference number: 6 (lower is better)
Translates to: GQSPSRTQTRNL*ARPRSQLRSRR
Trigger: TCTTCGGGAGCGAAGCTGAGAGCGAGGCCGAGCGCAAAGATTCCGAGTCTGAGTCCGACTCGGACTCTGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CCA 72 bp TCGTCCGACCTGTGGCCCTCATCGTCGTCATCGTTGTaGGCTTCAGAGCCACTGTGCTGGTCCTCGTCAGAG +
Preference number: 6 (lower is better)
Translates to: SSDLWPSSSSSL*ASEPLCWSSSE
Trigger: CTCTGACGAGGACCAGCACAGTGGCTCTGAAGCCCACAACGATGACGACGATGAGGGCCACAGGTCGGACGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CAA 72 bp TGGTCAGAGTCCGAGTCGGACTCAGACTCGGAATCTTaGCGCTCGGCCTCGCTCTCAGCTTCGCTCCCGAAG +
Preference number: 6 (lower is better)
Translates to: WSESESDSDSES*RSASLSASLPK
Trigger: CTTCGGGAGCGAAGCTGAGAGCGAGGCCGAGCGCAAAGATTCCGAGTCTGAGTCCGACTCGGACTCTGACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CAA 72 bp GCCCCCTCCTCCTCACTGTCGTCCCCGAACAGTTCCTaGTTACTGGGCTGTCCGGAGTCACCTCTGTCATCC +
Preference number: 6 (lower is better)
Translates to: APSSSLSSPNSS*LLGCPESPLSS
Trigger: GGATGACAGAGGTGACTCCGGACAGCCCAGTAACAAGGAACTGTTCGGGGACGACAGTGAGGAGGAGGGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CAA 72 bp CCTTCGTCCGACCTGTGGCCCTCATCGTCGTCATCGTaGTGGGCTTCAGAGCCACTGTGCTGGTCCTCGTCA +
Preference number: 6 (lower is better)
Translates to: PSSDLWPSSSSS*WASEPLCWSSS
Trigger: TGACGAGGACCAGCACAGTGGCTCTGAAGCCCACAACGATGACGACGATGAGGGCCACAGGTCGGACGAAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 72 bp GTCCGGAGTCACCTCTGTCATCCTGATCACTTTCGCTaGCAGAGGCGTTGCTGCCAGAAGCGCCGTTGTCCT +
Preference number: 6 (lower is better)
Translates to: VRSHLCHPDHFR*QRRCCQKRRCP
Trigger: AGGACAACGGCGCTTCTGGCAGCAACGCCTCTGGCAGCGAAAGTGATCAGGATGACAGAGGTGACTCCGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CCA 72 bp CTTCGGAGCCCTCATCACTGTCCGAGGAGTAGATTCTaGCTCGTTCCTCGCGGATGCCCCCTTTGTAGCGGT +
Preference number: 6 (lower is better)
Translates to: LRSPHHCPRSRF*LVPRGCPLCSG
Trigger: ACCGCTACAAAGGGGGCATCCGCGAGGAACGAGCCAGAATCTACTCCTCGGACAGTGATGAGGGCTCCGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS TCA 72 bp AGACGGCCTGCCCCTGCAGCCCAGTACCTTGTCTTATaGAAAGATGGTTGTGGTCGCCCTGCAGTGGGGCTT +
Preference number: 6 (lower is better)
Translates to: RRPAPAAQYLVL*KDGCGRPAVGL
Trigger: AAGCCCCACTGCAGGGCGACCACAACCATCTTTTCATAAGACAAGGTACTGGGCTGCAGGGGCAGGCCGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 72 bp TGTCATCCTGATCACTTTCGCTGCCAGAGGCGTTGCTaGCAGAAGCGCCGTTGTCCTGGTCAGAGTCCGAGT +
Preference number: 6 (lower is better)
Translates to: CHPDHFRCQRRC*QKRRCPGQSPS
Trigger: ACTCGGACTCTGACCAGGACAACGGCGCTTCTGGCAGCAACGCCTCTGGCAGCGAAAGTGATCAGGATGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CCA 72 bp CCTCCTCACTGTCGTCCCCGAACAGTTCCTTGTTACTaGGCTGTCCGGAGTCACCTCTGTCATCCTGATCAC +
Preference number: 6 (lower is better)
Translates to: PPHCRPRTVPCY*AVRSHLCHPDH
Trigger: GTGATCAGGATGACAGAGGTGACTCCGGACAGCCCAGTAACAAGGAACTGTTCGGGGACGACAGTGAGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS TCA 72 bp TTGTTACTGGGCTGTCCGGAGTCACCTCTGTCATCCTaGTCACTTTCGCTGCCAGAGGCGTTGCTGCCAGAA +
Preference number: 6 (lower is better)
Translates to: LLLGCPESPLSS*SLSLPEALLPE
Trigger: TTCTGGCAGCAACGCCTCTGGCAGCGAAAGTGATCAGGATGACAGAGGTGACTCCGGACAGCCCAGTAACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS TCA 72 bp GTGGTCAGAGCGCTCGGAAGCCTCCGACCTATTGTCTaGCCGTTCAGAGTGATTGTCACTGCCACTGTGATG +
Preference number: 6 (lower is better)
Translates to: VVRALGSLRPIV*PFRVIVTATVM
Trigger: CATCACAGTGGCAGTGACAATCACTCTGAACGGTCAGACAATAGGTCGGAGGCTTCCGAGCGCTCTGACCAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 72 bp CCGACCTATTGTCTGACCGTTCAGAGTGATTGTCACTaGCACTGTGATGAGAGGCCCCCTCCTCCTCACTGT +
Preference number: 6 (lower is better)
Translates to: PTYCLTVQSDCH*HCDERPPPPHC
Trigger: ACAGTGAGGAGGAGGGGGCCTCTCATCACAGTGGCAGTGACAATCACTCTGAACGGTCAGACAATAGGTCGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 72 bp TCGTCAGAGTTCTGCAGCTTATCCTCATCGGACCCTTaGTCCCGATCCTCGTCGTCAGAGTTCTGCAGCTTC +
Preference number: 6 (lower is better)
Translates to: SSEFCSLSSSDP*SRSSSSEFCSF
Trigger: GAAGCTGCAGAACTCTGACGACGAGGATCGGGAGCAAGGGTCCGATGAGGATAAGCTGCAGAACTCTGACGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CAA 72 bp GTCGTCAGAGTTCTGCAGCTTATCCTCATCGGACCCTaGCTCCCGATCCTCGTCGTCAGAGTTCTGCAGCTT +
Preference number: 6 (lower is better)
Translates to: VVRVLQLILIGP*LPILVVRVLQL
Trigger: AAGCTGCAGAACTCTGACGACGAGGATCGGGAGCAAGGGTCCGATGAGGATAAGCTGCAGAACTCTGACGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 72 bp TCGGACCCTTGCTCCCGATCCTCGTCGTCAGAGTTCTaGAGCTTCTCGTCATCTGACTGGTCACTTTTATCC +
Preference number: 6 (lower is better)
Translates to: SDPCSRSSSSEF*SFSSSDWSLLS
Trigger: GGATAAAAGTGACCAGTCAGATGACGAGAAGCTGCAGAACTCTGACGACGAGGATCGGGAGCAAGGGTCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 72 bp GTGTTCTGCATTTTCTCCTCGTCGTCGTCAGAGTTCTaGAGCTTATCCTCATCGGACCCTTGCTCCCGATCC +
Preference number: 6 (lower is better)
Translates to: VFCIFSSSSSEF*SLSSSDPCSRS
Trigger: GGATCGGGAGCAAGGGTCCGATGAGGATAAGCTGCAGAACTCTGACGACGACGAGGAGAAAATGCAGAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 72 bp TCAGAAATCTGGGCCCGGTCCTCGTCATCTGTGTTCTaGATTTTCTCCTCGTCGTCGTCAGAGTTCTGCAGC +
Preference number: 6 (lower is better)
Translates to: SEIWARSSSSVF*IFSSSSSEFCS
Trigger: GCTGCAGAACTCTGACGACGACGAGGAGAAAATGCAGAACACAGATGACGAGGACCGGGCCCAGATTTCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 72 bp TCGGACACCTGCGGCTGGTCCTCATCGTCCGAATTCTaGTTCTCCTCGTCATTATCAGAAGCTACTGGATGC +
Preference number: 6 (lower is better)
Translates to: SDTCGWSSSSEF*FSSSLSEATGC
Trigger: GCATCCAGTAGCTTCTGATAATGACGAGGAGAAGCAGAATTCGGACGATGAGGACCAGCCGCAGGTGTCCGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CCA 72 bp GAGTTCTGCATTTTCTCCTCATCGGACACCTGCGGCTaGTCCTCATCGTCCGAATTCTGCTTCTCCTCGTCA +
Preference number: 6 (lower is better)
Translates to: EFCIFSSSDTCG*SSSSEFCFSSS
Trigger: TGACGAGGAGAAGCAGAATTCGGACGATGAGGACCAGCCGCAGGTGTCCGATGAGGAGAAAATGCAGAACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 72 bp TCATCTGAGACTTGTGGCCTTTCATCGTCTGAGTTCTaGATTTTCTCCTCATCGGACACCTGCGGCTGGTCC +
Preference number: 6 (lower is better)
Translates to: SSETCGLSSSEF*IFSSSDTCGWS
Trigger: GGACCAGCCGCAGGTGTCCGATGAGGAGAAAATGCAGAACTCAGACGATGAAAGGCCACAAGTCTCAGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS GCA 72 bp CTGTCACTGCCTCTTGCAGATTCTGACTTCTGGTCTTaGTCCTCCTCACCGTCTGAACGCCTTCCATCTTCA +
Preference number: 6 (lower is better)
Translates to: LSLPLADSDFWS*SSSPSERLPSS
Trigger: TGAAGATGGAAGGCGTTCAGACGGTGAGGAGGAGCAAGACCAGAAGTCAGAATCTGCAAGAGGCAGTGACAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CCA 72 bp TCCTCAGACAGCTGCTGTCTGTCATCATCAGAAATCTaGGCCCGGTCCTCGTCATCTGTGTTCTGCATTTTC +
Preference number: 6 (lower is better)
Translates to: SSDSCCLSSSEI*ARSSSSVFCIF
Trigger: GAAAATGCAGAACACAGATGACGAGGACCGGGCCCAGATTTCTGATGATGACAGACAGCAGCTGTCTGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CCA 72 bp CAAAATATAAGTCATTGCCCAAGTCCGTGTTTACTTTaGGGATCTCCACTTCTATTCTGGTCTCAGGTATGG +
Preference number: 6 (lower is better)
Translates to: QNISHCPSPCLL*GSPLLFWSQVW
Trigger: CCATACCTGAGACCAGAATAGAAGTGGAGATCCCCAAAGTAAACACGGACTTGGGCAATGACTTATATTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CAA 72 bp ACAAAATATAAGTCATTGCCCAAGTCCGTGTTTACTTaGGGGATCTCCACTTCTATTCTGGTCTCAGGTATG +
Preference number: 6 (lower is better)
Translates to: TKYKSLPKSVFT*GISTSILVSGM
Trigger: CATACCTGAGACCAGAATAGAAGTGGAGATCCCCAAAGTAAACACGGACTTGGGCAATGACTTATATTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6
CDS CAA 72 bp TCACTGATCACATACTTCTTATGCTTTTTATTCGCTTaGTCATCGTCTTCCGCTTTCCTCTTTCCAGAAGAT +
Preference number: 6 (lower is better)
Translates to: SLITYFLCFLFA*SSSSAFLFPED
Trigger: ATCTTCTGGAAAGAGGAAAGCGGAAGACGATGACAAAGCGAATAAAAAGCATAAGAAGTATGTGATCAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048937.6