Pregenerated sensors for LEO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042487Ensembl transcript IDs: ENSMUST00000048937.6
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS GCA 90 bp | CGTTGTCCTGGTCAGAGTCCGAGTCGGACTCAGACTCGGAATCTTTaGGCTCGGCCTCGCTCTCAGCTTCGCTCCCGAAGAGGTCCTCCA | + |
Preference number: 5 (lower is better) Translates to: RCPGQSPSRTQTRNL*ARPRSQLRSRRGPP Trigger: TGGAGGACCTCTTCGGGAGCGAAGCTGAGAGCGAGGCCGAGCGCAAAGATTCCGAGTCTGAGTCCGACTCGGACTCTGACCAGGACAACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CCA 90 bp | CGGCTCCCTTCGTCCGACCTGTGGCCCTCATCGTCGTCATCGTTGTaGGCTTCAGAGCCACTGTGCTGGTCCTCGTCAGAGGGCTCATTA | + |
Preference number: 5 (lower is better) Translates to: RLPSSDLWPSSSSSL*ASEPLCWSSSEGSL Trigger: TAATGAGCCCTCTGACGAGGACCAGCACAGTGGCTCTGAAGCCCACAACGATGACGACGATGAGGGCCACAGGTCGGACGAAGGGAGCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CCA 90 bp | TCACTTTCGCTGCCAGAGGCGTTGCTGCCAGAAGCGCCGTTGTCCTaGTCAGAGTCCGAGTCGGACTCAGACTCGGAATCTTTGCGCTCG | + |
Preference number: 5 (lower is better) Translates to: SLSLPEALLPEAPLS*SESESDSDSESLRS Trigger: CGAGCGCAAAGATTCCGAGTCTGAGTCCGACTCGGACTCTGACCAGGACAACGGCGCTTCTGGCAGCAACGCCTCTGGCAGCGAAAGTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 90 bp | TACTGGGCTGTCCGGAGTCACCTCTGTCATCCTGATCACTTTCGCTaGCAGAGGCGTTGCTGCCAGAAGCGCCGTTGTCCTGGTCAGAGT | + |
Preference number: 5 (lower is better) Translates to: YWAVRSHLCHPDHFR*QRRCCQKRRCPGQS Trigger: ACTCTGACCAGGACAACGGCGCTTCTGGCAGCAACGCCTCTGGCAGCGAAAGTGATCAGGATGACAGAGGTGACTCCGGACAGCCCAGTA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CCA 90 bp | AGGCCCCCTCCTCCTCACTGTCGTCCCCGAACAGTTCCTTGTTACTaGGCTGTCCGGAGTCACCTCTGTCATCCTGATCACTTTCGCTGC | + |
Preference number: 5 (lower is better) Translates to: RPPPPHCRPRTVPCY*AVRSHLCHPDHFRC Trigger: GCAGCGAAAGTGATCAGGATGACAGAGGTGACTCCGGACAGCCCAGTAACAAGGAACTGTTCGGGGACGACAGTGAGGAGGAGGGGGCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CCA 90 bp | TCAGAGCCACTGTGCTGGTCCTCGTCAGAGGGCTCATTATCCTCGTaGTCAGAGCGCTCGGAAGCCTCCGACCTATTGTCTGACCGTTCA | + |
Preference number: 5 (lower is better) Translates to: SEPLCWSSSEGSLSS*SERSEASDLLSDRS Trigger: TGAACGGTCAGACAATAGGTCGGAGGCTTCCGAGCGCTCTGACCACGAGGATAATGAGCCCTCTGACGAGGACCAGCACAGTGGCTCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS TCA 90 bp | ATTATCCTCGTGGTCAGAGCGCTCGGAAGCCTCCGACCTATTGTCTaGCCGTTCAGAGTGATTGTCACTGCCACTGTGATGAGAGGCCCC | + |
Preference number: 5 (lower is better) Translates to: IILVVRALGSLRPIV*PFRVIVTATVMRGP Trigger: GGGGCCTCTCATCACAGTGGCAGTGACAATCACTCTGAACGGTCAGACAATAGGTCGGAGGCTTCCGAGCGCTCTGACCACGAGGATAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CCA 90 bp | CCCTTCTCCTCCTCAGACAGCTGCTGTCTGTCATCATCAGAAATCTaGGCCCGGTCCTCGTCATCTGTGTTCTGCATTTTCTCCTCGTCG | + |
Preference number: 5 (lower is better) Translates to: PFSSSDSCCLSSSEI*ARSSSSVFCIFSSS Trigger: CGACGAGGAGAAAATGCAGAACACAGATGACGAGGACCGGGCCCAGATTTCTGATGATGACAGACAGCAGCTGTCTGAGGAGGAGAAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 90 bp | TCGTCATCTGTGTTCTGCATTTTCTCCTCGTCGTCGTCAGAGTTCTaGAGCTTATCCTCATCGGACCCTTGCTCCCGATCCTCGTCGTCA | + |
Preference number: 5 (lower is better) Translates to: SSSVFCIFSSSSSEF*SLSSSDPCSRSSSS Trigger: TGACGACGAGGATCGGGAGCAAGGGTCCGATGAGGATAAGCTGCAGAACTCTGACGACGACGAGGAGAAAATGCAGAACACAGATGACGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 90 bp | TTATCCTCATCGGACCCTTGCTCCCGATCCTCGTCGTCAGAGTTCTaGAGCTTCTCGTCATCTGACTGGTCACTTTTATCCTCTCCATCC | + |
Preference number: 5 (lower is better) Translates to: LSSSDPCSRSSSSEF*SFSSSDWSLLSSPS Trigger: GGATGGAGAGGATAAAAGTGACCAGTCAGATGACGAGAAGCTGCAGAACTCTGACGACGAGGATCGGGAGCAAGGGTCCGATGAGGATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 90 bp | TTCTCCTCATCGGACACCTGCGGCTGGTCCTCATCGTCCGAATTCTaGTTCTCCTCGTCATTATCAGAAGCTACTGGATGCTCATCGTCA | + |
Preference number: 5 (lower is better) Translates to: FSSSDTCGWSSSSEF*FSSSLSEATGCSSS Trigger: TGACGATGAGCATCCAGTAGCTTCTGATAATGACGAGGAGAAGCAGAATTCGGACGATGAGGACCAGCCGCAGGTGTCCGATGAGGAGAA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 90 bp | CTTCCATCTTCATCTGAGACTTGTGGCCTTTCATCGTCTGAGTTCTaGATTTTCTCCTCATCGGACACCTGCGGCTGGTCCTCATCGTCC | + |
Preference number: 5 (lower is better) Translates to: LPSSSETCGLSSSEF*IFSSSDTCGWSSSS Trigger: GGACGATGAGGACCAGCCGCAGGTGTCCGATGAGGAGAAAATGCAGAACTCAGACGATGAAAGGCCACAAGTCTCAGATGAAGATGGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 90 bp | CTGTCATCATCAGAAATCTGGGCCCGGTCCTCGTCATCTGTGTTCTaGATTTTCTCCTCGTCGTCGTCAGAGTTCTGCAGCTTATCCTCA | + |
Preference number: 5 (lower is better) Translates to: LSSSEIWARSSSSVF*IFSSSSSEFCSLSS Trigger: TGAGGATAAGCTGCAGAACTCTGACGACGACGAGGAGAAAATGCAGAACACAGATGACGAGGACCGGGCCCAGATTTCTGATGATGACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS TCA 72 bp | CCCCGCTGGTGCTGTTTCTCTCGCATCCGGCGCTGCTaGGACTCCCTCCTGATGGAGGCCCTCAGGCGTTCT | + |
Preference number: 6 (lower is better) Translates to: PRWCCFSRIRRC*DSLLMEALRRS Trigger: AGAACGCCTGAGGGCCTCCATCAGGAGGGAGTCTCAGCAGCGCCGGATGCGAGAGAAACAGCACCAGCGGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CAA 90 bp | CCGTTGTCCTGGTCAGAGTCCGAGTCGGACTCAGACTCGGAATCTTaGCGCTCGGCCTCGCTCTCAGCTTCGCTCCCGAAGAGGTCCTCC | + |
Preference number: 6 (lower is better) Translates to: PLSWSESESDSDSES*RSASLSASLPKRSS Trigger: GGAGGACCTCTTCGGGAGCGAAGCTGAGAGCGAGGCCGAGCGCAAAGATTCCGAGTCTGAGTCCGACTCGGACTCTGACCAGGACAACGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CAA 72 bp | CTTTCGCTGCCAGAGGCGTTGCTGCCAGAAGCGCCGTaGTCCTGGTCAGAGTCCGAGTCGGACTCAGACTCG | + |
Preference number: 6 (lower is better) Translates to: LSLPEALLPEAP*SWSESESDSDS Trigger: CGAGTCTGAGTCCGACTCGGACTCTGACCAGGACAACGGCGCTTCTGGCAGCAACGCCTCTGGCAGCGAAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 72 bp | GGTCAGAGTCCGAGTCGGACTCAGACTCGGAATCTTTaGGCTCGGCCTCGCTCTCAGCTTCGCTCCCGAAGA | + |
Preference number: 6 (lower is better) Translates to: GQSPSRTQTRNL*ARPRSQLRSRR Trigger: TCTTCGGGAGCGAAGCTGAGAGCGAGGCCGAGCGCAAAGATTCCGAGTCTGAGTCCGACTCGGACTCTGACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CCA 72 bp | TCGTCCGACCTGTGGCCCTCATCGTCGTCATCGTTGTaGGCTTCAGAGCCACTGTGCTGGTCCTCGTCAGAG | + |
Preference number: 6 (lower is better) Translates to: SSDLWPSSSSSL*ASEPLCWSSSE Trigger: CTCTGACGAGGACCAGCACAGTGGCTCTGAAGCCCACAACGATGACGACGATGAGGGCCACAGGTCGGACGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CAA 72 bp | TGGTCAGAGTCCGAGTCGGACTCAGACTCGGAATCTTaGCGCTCGGCCTCGCTCTCAGCTTCGCTCCCGAAG | + |
Preference number: 6 (lower is better) Translates to: WSESESDSDSES*RSASLSASLPK Trigger: CTTCGGGAGCGAAGCTGAGAGCGAGGCCGAGCGCAAAGATTCCGAGTCTGAGTCCGACTCGGACTCTGACCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CAA 72 bp | GCCCCCTCCTCCTCACTGTCGTCCCCGAACAGTTCCTaGTTACTGGGCTGTCCGGAGTCACCTCTGTCATCC | + |
Preference number: 6 (lower is better) Translates to: APSSSLSSPNSS*LLGCPESPLSS Trigger: GGATGACAGAGGTGACTCCGGACAGCCCAGTAACAAGGAACTGTTCGGGGACGACAGTGAGGAGGAGGGGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CAA 72 bp | CCTTCGTCCGACCTGTGGCCCTCATCGTCGTCATCGTaGTGGGCTTCAGAGCCACTGTGCTGGTCCTCGTCA | + |
Preference number: 6 (lower is better) Translates to: PSSDLWPSSSSS*WASEPLCWSSS Trigger: TGACGAGGACCAGCACAGTGGCTCTGAAGCCCACAACGATGACGACGATGAGGGCCACAGGTCGGACGAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 72 bp | GTCCGGAGTCACCTCTGTCATCCTGATCACTTTCGCTaGCAGAGGCGTTGCTGCCAGAAGCGCCGTTGTCCT | + |
Preference number: 6 (lower is better) Translates to: VRSHLCHPDHFR*QRRCCQKRRCP Trigger: AGGACAACGGCGCTTCTGGCAGCAACGCCTCTGGCAGCGAAAGTGATCAGGATGACAGAGGTGACTCCGGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CCA 72 bp | CTTCGGAGCCCTCATCACTGTCCGAGGAGTAGATTCTaGCTCGTTCCTCGCGGATGCCCCCTTTGTAGCGGT | + |
Preference number: 6 (lower is better) Translates to: LRSPHHCPRSRF*LVPRGCPLCSG Trigger: ACCGCTACAAAGGGGGCATCCGCGAGGAACGAGCCAGAATCTACTCCTCGGACAGTGATGAGGGCTCCGAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS TCA 72 bp | AGACGGCCTGCCCCTGCAGCCCAGTACCTTGTCTTATaGAAAGATGGTTGTGGTCGCCCTGCAGTGGGGCTT | + |
Preference number: 6 (lower is better) Translates to: RRPAPAAQYLVL*KDGCGRPAVGL Trigger: AAGCCCCACTGCAGGGCGACCACAACCATCTTTTCATAAGACAAGGTACTGGGCTGCAGGGGCAGGCCGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 72 bp | TGTCATCCTGATCACTTTCGCTGCCAGAGGCGTTGCTaGCAGAAGCGCCGTTGTCCTGGTCAGAGTCCGAGT | + |
Preference number: 6 (lower is better) Translates to: CHPDHFRCQRRC*QKRRCPGQSPS Trigger: ACTCGGACTCTGACCAGGACAACGGCGCTTCTGGCAGCAACGCCTCTGGCAGCGAAAGTGATCAGGATGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CCA 72 bp | CCTCCTCACTGTCGTCCCCGAACAGTTCCTTGTTACTaGGCTGTCCGGAGTCACCTCTGTCATCCTGATCAC | + |
Preference number: 6 (lower is better) Translates to: PPHCRPRTVPCY*AVRSHLCHPDH Trigger: GTGATCAGGATGACAGAGGTGACTCCGGACAGCCCAGTAACAAGGAACTGTTCGGGGACGACAGTGAGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS TCA 72 bp | TTGTTACTGGGCTGTCCGGAGTCACCTCTGTCATCCTaGTCACTTTCGCTGCCAGAGGCGTTGCTGCCAGAA | + |
Preference number: 6 (lower is better) Translates to: LLLGCPESPLSS*SLSLPEALLPE Trigger: TTCTGGCAGCAACGCCTCTGGCAGCGAAAGTGATCAGGATGACAGAGGTGACTCCGGACAGCCCAGTAACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS TCA 72 bp | GTGGTCAGAGCGCTCGGAAGCCTCCGACCTATTGTCTaGCCGTTCAGAGTGATTGTCACTGCCACTGTGATG | + |
Preference number: 6 (lower is better) Translates to: VVRALGSLRPIV*PFRVIVTATVM Trigger: CATCACAGTGGCAGTGACAATCACTCTGAACGGTCAGACAATAGGTCGGAGGCTTCCGAGCGCTCTGACCAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 72 bp | CCGACCTATTGTCTGACCGTTCAGAGTGATTGTCACTaGCACTGTGATGAGAGGCCCCCTCCTCCTCACTGT | + |
Preference number: 6 (lower is better) Translates to: PTYCLTVQSDCH*HCDERPPPPHC Trigger: ACAGTGAGGAGGAGGGGGCCTCTCATCACAGTGGCAGTGACAATCACTCTGAACGGTCAGACAATAGGTCGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 72 bp | TCGTCAGAGTTCTGCAGCTTATCCTCATCGGACCCTTaGTCCCGATCCTCGTCGTCAGAGTTCTGCAGCTTC | + |
Preference number: 6 (lower is better) Translates to: SSEFCSLSSSDP*SRSSSSEFCSF Trigger: GAAGCTGCAGAACTCTGACGACGAGGATCGGGAGCAAGGGTCCGATGAGGATAAGCTGCAGAACTCTGACGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CAA 72 bp | GTCGTCAGAGTTCTGCAGCTTATCCTCATCGGACCCTaGCTCCCGATCCTCGTCGTCAGAGTTCTGCAGCTT | + |
Preference number: 6 (lower is better) Translates to: VVRVLQLILIGP*LPILVVRVLQL Trigger: AAGCTGCAGAACTCTGACGACGAGGATCGGGAGCAAGGGTCCGATGAGGATAAGCTGCAGAACTCTGACGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 72 bp | TCGGACCCTTGCTCCCGATCCTCGTCGTCAGAGTTCTaGAGCTTCTCGTCATCTGACTGGTCACTTTTATCC | + |
Preference number: 6 (lower is better) Translates to: SDPCSRSSSSEF*SFSSSDWSLLS Trigger: GGATAAAAGTGACCAGTCAGATGACGAGAAGCTGCAGAACTCTGACGACGAGGATCGGGAGCAAGGGTCCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 72 bp | GTGTTCTGCATTTTCTCCTCGTCGTCGTCAGAGTTCTaGAGCTTATCCTCATCGGACCCTTGCTCCCGATCC | + |
Preference number: 6 (lower is better) Translates to: VFCIFSSSSSEF*SLSSSDPCSRS Trigger: GGATCGGGAGCAAGGGTCCGATGAGGATAAGCTGCAGAACTCTGACGACGACGAGGAGAAAATGCAGAACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 72 bp | TCAGAAATCTGGGCCCGGTCCTCGTCATCTGTGTTCTaGATTTTCTCCTCGTCGTCGTCAGAGTTCTGCAGC | + |
Preference number: 6 (lower is better) Translates to: SEIWARSSSSVF*IFSSSSSEFCS Trigger: GCTGCAGAACTCTGACGACGACGAGGAGAAAATGCAGAACACAGATGACGAGGACCGGGCCCAGATTTCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 72 bp | TCGGACACCTGCGGCTGGTCCTCATCGTCCGAATTCTaGTTCTCCTCGTCATTATCAGAAGCTACTGGATGC | + |
Preference number: 6 (lower is better) Translates to: SDTCGWSSSSEF*FSSSLSEATGC Trigger: GCATCCAGTAGCTTCTGATAATGACGAGGAGAAGCAGAATTCGGACGATGAGGACCAGCCGCAGGTGTCCGA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CCA 72 bp | GAGTTCTGCATTTTCTCCTCATCGGACACCTGCGGCTaGTCCTCATCGTCCGAATTCTGCTTCTCCTCGTCA | + |
Preference number: 6 (lower is better) Translates to: EFCIFSSSDTCG*SSSSEFCFSSS Trigger: TGACGAGGAGAAGCAGAATTCGGACGATGAGGACCAGCCGCAGGTGTCCGATGAGGAGAAAATGCAGAACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 72 bp | TCATCTGAGACTTGTGGCCTTTCATCGTCTGAGTTCTaGATTTTCTCCTCATCGGACACCTGCGGCTGGTCC | + |
Preference number: 6 (lower is better) Translates to: SSETCGLSSSEF*IFSSSDTCGWS Trigger: GGACCAGCCGCAGGTGTCCGATGAGGAGAAAATGCAGAACTCAGACGATGAAAGGCCACAAGTCTCAGATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS GCA 72 bp | CTGTCACTGCCTCTTGCAGATTCTGACTTCTGGTCTTaGTCCTCCTCACCGTCTGAACGCCTTCCATCTTCA | + |
Preference number: 6 (lower is better) Translates to: LSLPLADSDFWS*SSSPSERLPSS Trigger: TGAAGATGGAAGGCGTTCAGACGGTGAGGAGGAGCAAGACCAGAAGTCAGAATCTGCAAGAGGCAGTGACAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CCA 72 bp | TCCTCAGACAGCTGCTGTCTGTCATCATCAGAAATCTaGGCCCGGTCCTCGTCATCTGTGTTCTGCATTTTC | + |
Preference number: 6 (lower is better) Translates to: SSDSCCLSSSEI*ARSSSSVFCIF Trigger: GAAAATGCAGAACACAGATGACGAGGACCGGGCCCAGATTTCTGATGATGACAGACAGCAGCTGTCTGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CCA 72 bp | CAAAATATAAGTCATTGCCCAAGTCCGTGTTTACTTTaGGGATCTCCACTTCTATTCTGGTCTCAGGTATGG | + |
Preference number: 6 (lower is better) Translates to: QNISHCPSPCLL*GSPLLFWSQVW Trigger: CCATACCTGAGACCAGAATAGAAGTGGAGATCCCCAAAGTAAACACGGACTTGGGCAATGACTTATATTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CAA 72 bp | ACAAAATATAAGTCATTGCCCAAGTCCGTGTTTACTTaGGGGATCTCCACTTCTATTCTGGTCTCAGGTATG | + |
Preference number: 6 (lower is better) Translates to: TKYKSLPKSVFT*GISTSILVSGM Trigger: CATACCTGAGACCAGAATAGAAGTGGAGATCCCCAAAGTAAACACGGACTTGGGCAATGACTTATATTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |
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CDS CAA 72 bp | TCACTGATCACATACTTCTTATGCTTTTTATTCGCTTaGTCATCGTCTTCCGCTTTCCTCTTTCCAGAAGAT | + |
Preference number: 6 (lower is better) Translates to: SLITYFLCFLFA*SSSSAFLFPED Trigger: ATCTTCTGGAAAGAGGAAAGCGGAAGACGATGACAAAGCGAATAAAAAGCATAAGAAGTATGTGATCAGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048937.6 |