Pregenerated sensors for LENEP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078173Ensembl transcript IDs: ENSMUST00000057431.6
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTTCTGTTTTGCTCTTCCCTCCTGGCAACAGAGATTCAGCAAAGCTaGTTCTTGGTCTCACTACTCCCGAGATCTGTCCTTCTTCCTGCT | + |
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Preference number: 1 (lower is better) Translates to: FLFCSSLLATEIQQS*FLVSLLPRSVLLPA Trigger: AGCAGGAAGAAGGACAGATCTCGGGAGTAGTGAGACCAAGAACCAGCTTTGCTGAATCTCTGTTGCCAGGAGGGAAGAGCAAAACAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR CCA 90 bp | CAAAAATCAGGCTGTGGTATAGGGAGAGGAGTAGGTACAAAGTCCTaGGTTCAGTCCCCAACACGGAAACTCAACCAACCAACCAACCAA | + |
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Preference number: 1 (lower is better) Translates to: QKSGCGIGRGVGTKS*VQSPTRKLNQPTNQ Trigger: TTGGTTGGTTGGTTGGTTGAGTTTCCGTGTTGGGGACTGAACCCAGGACTTTGTACCTACTCCTCTCCCTATACCACAGCCTGATTTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR CCA 90 bp | ACAACTAGTACATATAGTATCTGTATGACAACAAAAATCAGGCTGTaGTATAGGGAGAGGAGTAGGTACAAAGTCCTGGGTTCAGTCCCC | + |
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Preference number: 1 (lower is better) Translates to: TTSTYSICMTTKIRL*YRERSRYKVLGSVP Trigger: GGGGACTGAACCCAGGACTTTGTACCTACTCCTCTCCCTATACCACAGCCTGATTTTTGTTGTCATACAGATACTATATGTACTAGTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR CCA 90 bp | TTCATATTCACTTATTCACTGAAGAATGTGCTGTATAGATCAGGATaGTCTCAAAATCTTCCAGCCTCCGCCTCCCAAGTGCTGGAATTA | + |
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Preference number: 1 (lower is better) Translates to: FIFTYSLKNVLYRSG*SQNLPASASQVLEL Trigger: TAATTCCAGCACTTGGGAGGCGGAGGCTGGAAGATTTTGAGACCATCCTGATCTATACAGCACATTCTTCAGTGAATAAGTGAATATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR TCA 90 bp | AGGGCTATAGAAAAGATGGGAGAGCTGGGCTGCAGGTTCCACCCCAGAAGCTGCTCTTGGTGTCAGGGGTaGCAGGAGGTGTTCCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: RAIEKMGELGCRFHPRSCSWCQG*QEVFPA Trigger: GGCAGGGAACACCTCCTGTCACCCCTGACACCAAGA...GCAGCTTCTGGGGTGGAACCTGCAGCCCAGCTCTCCCATCTTTTCTATAGCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR TCA 90 bp | CAATGGAGTCTGAGCCAAGCTCATGCGTACCAGGAGCACAGCAGAGATGGGAGCAGAGATTCCCCAGGGTaGGGCAGGTCAGATGGATGG | + |
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Preference number: 2 (lower is better) Translates to: QWSLSQAHAYQEHSRDGSRDSPG*GRSDGW Trigger: CCATCCATCTGACCTGCCTCACCCTGGGGAATCTCT...GCTCCCATCTCTGCTGTGCTCCTGGTACGCATGAGCTTGGCTCAGACTCCATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR TCA 90 bp | GCTCCAGGAGATGGGGCAGAGAGCTATATACTACCTACGGGTCAGTGCTGCAGGAGCAGAGATGGGAGCTaGGGAGAGATTCCCCAGGGT | + |
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Preference number: 2 (lower is better) Translates to: APGDGAESYILPTGQCCRSRDGS*GEIPQG Trigger: ACCCTGGGGAATCTCTCCTCAGCTCCCATCTCTGCT...CCTGCAGCACTGACCCGTAGGTAGTATATAGCTCTCTGCCCCATCTCCTGGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR TCA 90 bp | ACGTGGGTTGGTGGGCTCACTGTGCCAATTTTTGGAGGAATATTAGATCCTGCCTGCAGCCACACCTCCTaGGAGTCTGCCCTCCCCTCC | + |
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Preference number: 2 (lower is better) Translates to: TWVGGLTVPIFGGILDPACSHTS*ESALPS Trigger: GGAGGGGAGGGCAGACTCTCAGGAGGTGTGGCTGCA...GGCAGGATCTAATATTCCTCCAAAAATTGGCACAGTGAGCCCACCAACCCACGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR TCA 90 bp | GCTCCAGGAGATGGGGCAGAGAGCTATATACTACCTACGGGTCAGTGCTGCAGGAGTCTCAATGGAGTCTaGGCCAAGCTCATGCGTACC | + |
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Preference number: 2 (lower is better) Translates to: APGDGAESYILPTGQCCRSLNGV*AKLMRT Trigger: GGTACGCATGAGCTTGGCTCAGACTCCATTGAGACT...CCTGCAGCACTGACCCGTAGGTAGTATATAGCTCTCTGCCCCATCTCCTGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR TCA 90 bp | GCTCCAGGAGATGGGGCAGAGAGCTATATACTACCTACGGGTCAGTGCTGCAGGCTTGAAGGGGTGGTATaGCCTCATGGGTGCTTTCTC | + |
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Preference number: 2 (lower is better) Translates to: APGDGAESYILPTGQCCRLEGVV*PHGCFL Trigger: GAGAAAGCACCCATGAGGTCATACCACCCCTTCAAG...CCTGCAGCACTGACCCGTAGGTAGTATATAGCTCTCTGCCCCATCTCCTGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR CCA 90 bp | GCTCCAGGAGATGGGGCAGAGAGCTATATACTACCTACGGGTCAGTGCTGCAGGGGCAGGTCAGATGGATaGACAGCTCAGAGCAAGGTT | + |
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Preference number: 2 (lower is better) Translates to: APGDGAESYILPTGQCCRGRSDG*TAQSKV Trigger: AACCTTGCTCTGAGCTGTCCATCCATCTGACCTGCC...CCTGCAGCACTGACCCGTAGGTAGTATATAGCTCTCTGCCCCATCTCCTGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR CCA 90 bp | GCTCCAGGAGATGGGGCAGAGAGCTATATACTACCTACGGGTCAGTGCTGCAGGGTGAGGCAGGTCAGATaGATGGACAGCTCAGAGCAA | + |
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Preference number: 2 (lower is better) Translates to: APGDGAESYILPTGQCCRVRQVR*MDSSEQ Trigger: TTGCTCTGAGCTGTCCATCCATCTGACCTGCCTCAC...CCTGCAGCACTGACCCGTAGGTAGTATATAGCTCTCTGCCCCATCTCCTGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR TCA 90 bp | CTAACAGTTCAAAGAAAGCAAGTGCTGGTGGCTGCCAACGGCAAGTCAGGAGGCCTTCTGGGAAAAGGCTaGGTCTTTGGGTCCTCATCC | + |
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Preference number: 2 (lower is better) Translates to: LTVQRKQVLVAANGKSGGLLGKG*VFGSSS Trigger: GGATGAGGACCCAAAGACTCAGCCTTTTCCCAGAAG...GCCTCCTGACTTGCCGTTGGCAGCCACCAGCACTTGCTTTCTTTGAACTGTTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR CCA 90 bp | ACGTGGGTTGGTGGGCTCACTGTGCCAATTTTTGGAGGAATATTAGATCCTGCCAAAAGATGGGAGAGCTaGGCTGCAGGTTCCACCCCA | + |
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Preference number: 2 (lower is better) Translates to: TWVGGLTVPIFGGILDPAKRWES*AAGSTP Trigger: TGGGGTGGAACCTGCAGCCCAGCTCTCCCATCTTTT...GGCAGGATCTAATATTCCTCCAAAAATTGGCACAGTGAGCCCACCAACCCACGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR CCA 90 bp | GCTCCAGGAGATGGGGCAGAGAGCTATATACTACCTACGGGTCAGTGCTGCAGGCTAGGTCACATCTTCTaGGAAAAGGCTGAGTCTTTG | + |
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Preference number: 2 (lower is better) Translates to: APGDGAESYILPTGQCCRLGHIF*EKAESL Trigger: CAAAGACTCAGCCTTTTCCCAGAAGATGTGACCTAG...CCTGCAGCACTGACCCGTAGGTAGTATATAGCTCTCTGCCCCATCTCCTGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR CCA 90 bp | CTCTTAGGGTGTCTTAGTGTATCTGAACTGGGACTAGCTGAGTACACTTCCCGTTCTCTGCACAAAAGTTaGGAGGAACATGGCTTTTCT | + |
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Preference number: 2 (lower is better) Translates to: LLGCLSVSELGLAEYTSRSLHKS*EEHGFS Trigger: AGAAAAGCCATGTTCCTCCCAACTTTTGTGCAGAGA...ACGGGAAGTGTACTCAGCTAGTCCCAGTTCAGATACACTAAGACACCCTAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR TCA 90 bp | TTCTGTTTTGCTCTTCCCTCCTGGCAACAGAGATTCAGCAAAGCTGGTTCTTGGATATTTATAGTGGAGTaGTTACCAGGCATTTCAGGG | + |
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Preference number: 2 (lower is better) Translates to: FCFALPSWQQRFSKAGSWIFIVE*LPGISG Trigger: CCCTGAAATGCCTGGTAATCACTCCACTATAAATAT...CCAAGAACCAGCTTTGCTGAATCTCTGTTGCCAGGAGGGAAGAGCAAAACAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR CCA 90 bp | CTCTTAGGGTGTCTTAGTGTATCTGAACTGGGACTAGCTGAGTACACTTCCCGTCACTGTGCCAATTTTTaGAGGAATATTAGATCCTGC | + |
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Preference number: 2 (lower is better) Translates to: LLGCLSVSELGLAEYTSRHCANF*RNIRSC Trigger: GCAGGATCTAATATTCCTCCAAAAATTGGCACAGTG...ACGGGAAGTGTACTCAGCTAGTCCCAGTTCAGATACACTAAGACACCCTAAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR-3UTR CCA 90 bp | TTCTGTTTTGCTCTTCCCTCCTGGCAACAGAGATTCAGCAAAGCTGGTTCTTGGAATGTTCAGAATTTTTaGCCTCGAGGCCTATTTATT | + |
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Preference number: 2 (lower is better) Translates to: FCFALPSWQQRFSKAGSWNVQNF*PRGLFI Trigger: AATAAATAGGCCTCGAGGCCAAAAATTCTGAACATT...CCAAGAACCAGCTTTGCTGAATCTCTGTTGCCAGGAGGGAAGAGCAAAACAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| CDS-3UTR TCA 90 bp | TTCCCCAGGGTGAGGCAGGTCAGATGGATGGACAGCTCAGAGCAAGGTTCGTGGCTCGAAGGGCATCTCTaGGAGAGAAGGGCAGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: FPRVRQVRWMDSSEQGSWLEGHL*ERRAGP Trigger: AGGCCCTGCCCTTCTCTCTCAGAGATGCCCTTCGAG...CCACGAACCTTGCTCTGAGCTGTCCATCCATCTGACCTGCCTCACCCTGGGGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| CDS-3UTR CCA 90 bp | CTCTTAGGGTGTCTTAGTGTATCTGAACTGGGACTAGCTGAGTACACTTCCCGTTTAATGACAGGCACCTaGAGGCCAGTGCCTCGAAGG | + |
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Preference number: 4 (lower is better) Translates to: LLGCLSVSELGLAEYTSRLMTGT*RPVPRR Trigger: CCTTCGAGGCACTGGCCTCCAGGTGCCTGTCATTAA...ACGGGAAGTGTACTCAGCTAGTCCCAGTTCAGATACACTAAGACACCCTAAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR CAA 72 bp | TGCCTAGGTCACATCTTCTGGGAAAAGGCTGAGTCTTaGGGTCCTCATCCTAGCATCCCAGGCCTCATAGAA | + |
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Preference number: 4 (lower is better) Translates to: CLGHIFWEKAES*GPHPSIPGLIE Trigger: TTCTATGAGGCCTGGGATGCTAGGATGAGGACCCAAAGACTCAGCCTTTTCCCAGAAGATGTGACCTAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| CDS-3UTR TCA 90 bp | ACGTGGGTTGGTGGGCTCACTGTGCCAATTTTTGGAGGAATATTAGATCCTGCCAATCCAGCAGTTCCTTaGTACACCAGCAACAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: TWVGGLTVPIFGGILDPANPAVP*YTSNKE Trigger: TTCTTTGTTGCTGGTGTATCAAGGAACTGCTGGATT...GGCAGGATCTAATATTCCTCCAAAAATTGGCACAGTGAGCCCACCAACCCACGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR CAA 72 bp | CTGCACAAAAGTTGGGAGGAACATGGCTTTTCTGTTTaGCTCTTCCCTCCTGGCAACAGAGATTCAGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: LHKSWEEHGFSV*LFPPGNRDSAK Trigger: CTTTGCTGAATCTCTGTTGCCAGGAGGGAAGAGCAAAACAGAAAAGCCATGTTCCTCCCAACTTTTGTGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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| 3UTR CAA 72 bp | CACATGCCCTCATTCCCCTTTGAATGTTCAGAATTTTaGGCCTCGAGGCCTATTTATTATATTTATAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: HMPSFPFECSEF*ASRPIYYIYSG Trigger: TCCACTATAAATATAATAAATAGGCCTCGAGGCCAAAAATTCTGAACATTCAAAGGGGAATGAGGGCATGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057431.6 |
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