Pregenerated sensors for LEMD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044857Ensembl transcript IDs: ENSMUST00000055117.9, ENSMUST00000237257.2
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCACCACCCAACCCACCTTCCAAGCGAGGGGCTTCAGGATCACCGTaGTGTCTAGCTGTGTGCAGGACCTCCAGGGTTCCAACCACTGCC | + |
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Preference number: 1 (lower is better) Translates to: PPPNPPSKRGASGSP*CLAVCRTSRVPTTA Trigger: GGCAGTGGTTGGAACCCTGGAGGTCCTGCACACAGCTAGACAGCACGGTGATCCTGAAGCCCCTCGCTTGGAAGGTGGGTTGGGTGGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR GCA 90 bp | CACTACTCCATGTGGCCTGCAGAGGGCAGTGTGCAGCCACGATGCTaGACCCTACCTGTGTGGCTAAGCAGCCAGGAAGCCTGTGCACAG | + |
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Preference number: 1 (lower is better) Translates to: HYSMWPAEGSVQPRC*TLPVWLSSQEACAQ Trigger: CTGTGCACAGGCTTCCTGGCTGCTTAGCCACACAGGTAGGGTGCAGCATCGTGGCTGCACACTGCCCTCTGCAGGCCACATGGAGTAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR GCA 90 bp | CCACACTACTCCATGTGGCCTGCAGAGGGCAGTGTGCAGCCACGATaGTGCACCCTACCTGTGTGGCTAAGCAGCCAGGAAGCCTGTGCA | + |
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Preference number: 1 (lower is better) Translates to: PHYSMWPAEGSVQPR*CTLPVWLSSQEACA Trigger: TGCACAGGCTTCCTGGCTGCTTAGCCACACAGGTAGGGTGCAGCATCGTGGCTGCACACTGCCCTCTGCAGGCCACATGGAGTAGTGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR CCA 90 bp | TTTCCAACAGTTCCACCCCCAATACAAAAGCCATTGTCTTCTGGCTaGGGCCTGCTCAGTCCCGGTCCTGCTGACCACCCAGACACACGG | + |
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Preference number: 1 (lower is better) Translates to: FPTVPPPIQKPLSSG*GLLSPGPADHPDTR Trigger: CCGTGTGTCTGGGTGGTCAGCAGGACCGGGACTGAGCAGGCCCCAGCCAGAAGACAATGGCTTTTGTATTGGGGGTGGAACTGTTGGAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR GCA 90 bp | ACCGTGCTGTCTAGCTGTGTGCAGGACCTCCAGGGTTCCAACCACTaGCCATCTTTTTATCCAGGGAGAACAAGCCACTCTCCCCTGTCA | + |
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Preference number: 1 (lower is better) Translates to: TVLSSCVQDLQGSNH*PSFYPGRTSHSPLS Trigger: TGACAGGGGAGAGTGGCTTGTTCTCCCTGGATAAAAAGATGGGCAGTGGTTGGAACCCTGGAGGTCCTGCACACAGCTAGACAGCACGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR-3UTR TCA 90 bp | GTGTCTTCTGGAGGCAGCTGCACGTCACCTCCAGGGGCTGTCCTCCTGCTGCTGGGCACTGCTGACCTGTaGGCAGCTCTGAGGCACAGG | + |
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Preference number: 2 (lower is better) Translates to: VSSGGSCTSPPGAVLLLLGTADL*AALRHR Trigger: CCTGTGCCTCAGAGCTGCTCACAGGTCAGCAGTGCC...CAGCAGCAGGAGGACAGCCCCTGGAGGTGACGTGCAGCTGCCTCCAGAAGACAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR-3UTR CCA 90 bp | AAGGGGGTGTCTTGTGTCTTCTGGAGGCAGCTGCACGTCACCTCCAGGGGCTGTCCCCAGCTGGGTGGCTaGGTCAGGCTGGCGGTAACA | + |
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Preference number: 2 (lower is better) Translates to: KGVSCVFWRQLHVTSRGCPQLGG*VRLAVT Trigger: TGTTACCGCCAGCCTGACCCAGCCACCCAGCTGGGG...ACAGCCCCTGGAGGTGACGTGCAGCTGCCTCCAGAAGACACAAGACACCCCCTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR CAA 90 bp | AGGGCAATCAAGGCAGGTGTGAATGAGCACCAAAGGTCTGTGTCCTaGCCCCAGCTGGGTGGCTGGGTCAGGCTGGCGGTAACAGGCCCT | + |
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Preference number: 2 (lower is better) Translates to: RAIKAGVNEHQRSVS*PQLGGWVRLAVTGP Trigger: AGGGCCTGTTACCGCCAGCCTGACCCAGCCACCCAGCTGGGGCAAGGACACAGACCTTTGGTGCTCATTCACACCTGCCTTGATTGCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR-3UTR CCA 90 bp | AATGGCCCACACTACTCCATGTGGCCTGCAGAGGGCAGTGTGCAGCCACGATGCCATGCAGGAGTGGGCTaGGTTCCTCCCCTCCCCTTA | + |
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Preference number: 2 (lower is better) Translates to: NGPHYSMWPAEGSVQPRCHAGVG*VPPLPL Trigger: TAAGGGGAGGGGAGGAACCCAGCCCACTCCTGCATG...GCATCGTGGCTGCACACTGCCCTCTGCAGGCCACATGGAGTAGTGTGGGCCATT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR-3UTR CCA 90 bp | GTGTATTTAGAGCAGGTCCTCCATAGCCGAGGGCTAATGGCCCACACTACTCCAAGGCACAGGCAGCTGTaGCTGGACTCCCCACGCCTT | + |
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Preference number: 2 (lower is better) Translates to: VYLEQVLHSRGLMAHTTPRHRQL*LDSPRL Trigger: AAGGCGTGGGGAGTCCAGCCACAGCTGCCTGTGCCT...TGGAGTAGTGTGGGCCATTAGCCCTCGGCTATGGAGGACCTGCTCTAAATACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR-3UTR CCA 90 bp | CCATCTTTTTATCCAGGGAGAACAAGCCACTCTCCCCTGTCAGTCAGTAATACTCTTGCCCCAGCTGGGTaGCTGGGTCAGGCTGGCGGT | + |
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Preference number: 2 (lower is better) Translates to: PSFYPGRTSHSPLSVSNTLAPAG*LGQAGG Trigger: ACCGCCAGCCTGACCCAGCCACCCAGCTGGGGCAAG...AGTATTACTGACTGACAGGGGAGAGTGGCTTGTTCTCCCTGGATAAAAAGATGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR-3UTR GCA 90 bp | GTGTATTTAGAGCAGGTCCTCCATAGCCGAGGGCTAATGGCCCACACTACTCCAGCTTCAGGATCACCGTaGTGTCTAGCTGTGTGCAGG | + |
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Preference number: 2 (lower is better) Translates to: VYLEQVLHSRGLMAHTTPASGSP*CLAVCR Trigger: CCTGCACACAGCTAGACAGCACGGTGATCCTGAAGC...TGGAGTAGTGTGGGCCATTAGCCCTCGGCTATGGAGGACCTGCTCTAAATACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR-3UTR TCA 90 bp | GTGTATTTAGAGCAGGTCCTCCATAGCCGAGGGCTAATGGCCCACACTACTCCACAAGGCAGGTGTGAATaGGCACCAAAGGTCTGTGTC | + |
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Preference number: 2 (lower is better) Translates to: VYLEQVLHSRGLMAHTTPQGRCE*APKVCV Trigger: GACACAGACCTTTGGTGCTCATTCACACCTGCCTTG...TGGAGTAGTGTGGGCCATTAGCCCTCGGCTATGGAGGACCTGCTCTAAATACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR-3UTR CCA 90 bp | TGCTACACGGAGACCGAAATGAGCATACTGCTACATGGAGACCACACTTTATTAAGGCCCATGCAGGAGTaGGCTGGGTTCCTCCCCTCC | + |
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Preference number: 2 (lower is better) Translates to: CYTETEMSILLHGDHTLLRPMQE*AGFLPS Trigger: GGAGGGGAGGAACCCAGCCCACTCCTGCATGGGCCT...TAATAAAGTGTGGTCTCCATGTAGCAGTATGCTCATTTCGGTCTCCGTGTAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR-3UTR CCA 90 bp | GCTACATGGAGACCACACTTTATTAAGAAACAGAGACCAGCAATAGGTCCAAAAACAGGCAGCTGTGGCTaGACTCCCCACGCCTTCCAG | + |
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Preference number: 2 (lower is better) Translates to: ATWRPHFIKKQRPAIGPKTGSCG*TPHAFQ Trigger: CTGGAAGGCGTGGGGAGTCCAGCCACAGCTGCCTGT...TTTTGGACCTATTGCTGGTCTCTGTTTCTTAATAAAGTGTGGTCTCCATGTAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR-3UTR GCA 90 bp | GCTACATGGAGACCACACTTTATTAAGAAACAGAGACCAGCAATAGGTCCAAAAAAAGGTCTGTGTCCTTaGCCCAGCTGGGTGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: ATWRPHFIKKQRPAIGPKKGLCP*PSWVAG Trigger: CCCAGCCACCCAGCTGGGGCAAGGACACAGACCTTT...TTTTGGACCTATTGCTGGTCTCTGTTTCTTAATAAAGTGTGGTCTCCATGTAGC 49% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR-3UTR CAA 90 bp | AATGGCCCACACTACTCCATGTGGCCTGCAGAGGGCAGTGTGCAGCCACGATGCCAAAGGTCTGTGTCCTaGCCCCAGCTGGGTGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: NGPHYSMWPAEGSVQPRCQRSVS*PQLGGW Trigger: CCAGCCACCCAGCTGGGGCAAGGACACAGACCTTTG...GCATCGTGGCTGCACACTGCCCTCTGCAGGCCACATGGAGTAGTGTGGGCCATT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR TCA 72 bp | CGTCACCTCCAGGGGCTGTCCTCCTGCTGCTGTAGGTaGGACCCGCCTGAAGAGTTGCTCGAAAGCCTCCCT | + |
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Preference number: 3 (lower is better) Translates to: RHLQGLSSCCCR*DPPEELLESLP Trigger: AGGGAGGCTTTCGAGCAACTCTTCAGGCGGGTCTCACCTACAGCAGCAGGAGGACAGCCCCTGGAGGTGACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR GCA 72 bp | GCTCCCTGGAAGCGAAAAGGCACATGGACCAAGCTTTaGCCCACCACCCAACCCACCTTCCAAGCGAGGGGC | + |
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Preference number: 3 (lower is better) Translates to: APWKRKGTWTKL*PTTQPTFQARG Trigger: GCCCCTCGCTTGGAAGGTGGGTTGGGTGGTGGGGCAAAGCTTGGTCCATGTGCCTTTTCGCTTCCAGGGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR TCA 72 bp | GTCTTCTGGCTGGGGCCTGCTCAGTCCCGGTCCTGCTaGCCACCCAGACACACGGCAATGAGCATACTGCTA | + |
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Preference number: 3 (lower is better) Translates to: VFWLGPAQSRSC*PPRHTAMSILL Trigger: TAGCAGTATGCTCATTGCCGTGTGTCTGGGTGGTCAGCAGGACCGGGACTGAGCAGGCCCCAGCCAGAAGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR GCA 72 bp | TCCATGTGGCCTGCAGAGGGCAGTGTGCAGCCACGATaGTGCACCCTACCTGTGTGGCTAAGCAGCCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: SMWPAEGSVQPR*CTLPVWLSSQE Trigger: TTCCTGGCTGCTTAGCCACACAGGTAGGGTGCAGCATCGTGGCTGCACACTGCCCTCTGCAGGCCACATGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR TCA 72 bp | CCAGACCTGAGACCCGGAGGGCAATCAAGGCAGGTGTaGATGAGCACCAAAGGTCTGTGTCCTTGCCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: PDLRPGGQSRQV*MSTKGLCPCPS Trigger: GCTGGGGCAAGGACACAGACCTTTGGTGCTCATTCACACCTGCCTTGATTGCCCTCCGGGTCTCAGGTCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR CCA 72 bp | GTTCCACCCCCAATACAAAAGCCATTGTCTTCTGGCTaGGGCCTGCTCAGTCCCGGTCCTGCTGACCACCCA | + |
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Preference number: 3 (lower is better) Translates to: VPPPIQKPLSSG*GLLSPGPADHP Trigger: TGGGTGGTCAGCAGGACCGGGACTGAGCAGGCCCCAGCCAGAAGACAATGGCTTTTGTATTGGGGGTGGAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR CCA 72 bp | CCAGCTGCTCCTACCTTCTATAACATCGTCCCCTTCTaGACAGAGGCCCATGCAGGAGTGGGCTGGGTTCCT | + |
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Preference number: 3 (lower is better) Translates to: PAAPTFYNIVPF*TEAHAGVGWVP Trigger: AGGAACCCAGCCCACTCCTGCATGGGCCTCTGTCCAGAAGGGGACGATGTTATAGAAGGTAGGAGCAGCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR GCA 72 bp | TCTAGCTGTGTGCAGGACCTCCAGGGTTCCAACCACTaGCCATCTTTTTATCCAGGGAGAACAAGCCACTCT | + |
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Preference number: 3 (lower is better) Translates to: SSCVQDLQGSNH*PSFYPGRTSHS Trigger: AGAGTGGCTTGTTCTCCCTGGATAAAAAGATGGGCAGTGGTTGGAACCCTGGAGGTCCTGCACACAGCTAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| 3UTR CCA 72 bp | CTGCTACACGGAGACCGAAATGAGCATACTGCTACATaGAGACCACACTTTATTAAGAAACAGAGACCAGCA | + |
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Preference number: 3 (lower is better) Translates to: LLHGDRNEHTAT*RPHFIKKQRPA Trigger: TGCTGGTCTCTGTTTCTTAATAAAGTGTGGTCTCCATGTAGCAGTATGCTCATTTCGGTCTCCGTGTAGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR TCA 90 bp | GGGTGTCTTGTGTCTTCTGGAGGCAGCTGCACGTCACCTCCAGGGGCTGTCCTCTCCGCGTGGTGTCGGTaGTGGGGCCTGGCTGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: GCLVSSGGSCTSPPGAVLSAWCR*WGLAGS Trigger: GCTTCCAGCCAGGCCCCATCACCGACACCACGCGGA...GAGGACAGCCCCTGGAGGTGACGTGCAGCTGCCTCCAGAAGACACAAGACACCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CCA 90 bp | CCACCCAACCCACCTTCCAAGCGAGGGGCTTCAGGATCACCGTGCTGTCTAGCTGTCGGTGATGGGGCCTaGCTGGAAGCCCAGGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: PPNPPSKRGASGSPCCLAVGDGA*LEAQGL Trigger: CAGGCCCTGGGCTTCCAGCCAGGCCCCATCACCGAC...AGCTAGACAGCACGGTGATCCTGAAGCCCCTCGCTTGGAAGGTGGGTTGGGTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR GCA 90 bp | GGAAGCGAAAAGGCACATGGACCAAGCTTTGCCCCACCACCCAACCCACCTTCCGGCGGCGCAGCTTGTTaGGGTAGACGTTCCGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: GSEKAHGPSFAPPPNPPSGGAAC*GRRSAW Trigger: CCACGCGGAACGTCTACCGCAACAAGCTGCGCCGCC...GGAAGGTGGGTTGGGTGGTGGGGCAAAGCTTGGTCCATGTGCCTTTTCGCTTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR GCA 90 bp | GTGTATTTAGAGCAGGTCCTCCATAGCCGAGGGCTAATGGCCCACACTACTCCACGTCATCCTCCGAGCTaGCCCGGACCGAGGCGCGGC | + |
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Preference number: 4 (lower is better) Translates to: VYLEQVLHSRGLMAHTTPRHPPS*PGPRRG Trigger: GCCGCGCCTCGGTCCGGGGCAGCTCGGAGGATGACG...TGGAGTAGTGTGGGCCATTAGCCCTCGGCTATGGAGGACCTGCTCTAAATACAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR GCA 90 bp | CTGTGTGCAGGACCTCCAGGGTTCCAACCACTGCCCATCTTTTTATCCAGGGAGTTGTCCTCCGCCTCCTaGGGCGCCGAGGGCTTGCCC | + |
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Preference number: 4 (lower is better) Translates to: LCAGPPGFQPLPIFLSRELSSAS*GAEGLP Trigger: GGGCAAGCCCTCGGCGCCGCAGGAGGCGGAGGACAA...CTCCCTGGATAAAAAGATGGGCAGTGGTTGGAACCCTGGAGGTCCTGCACACAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR GCA 90 bp | GTGTCTTCTGGAGGCAGCTGCACGTCACCTCCAGGGGCTGTCCTCCTGCTGCTGTGCCCACGTCCTTGTTaGTGCTCAGGATCCAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: VSSGGSCTSPPGAVLLLLCPRPC*CSGSRS Trigger: TGACCTGGATCCTGAGCAGCAACAAGGACGTGGGCA...CAGCAGCAGGAGGACAGCCCCTGGAGGTGACGTGCAGCTGCCTCCAGAAGACAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CCA 90 bp | CCCCAGCCACCTCTGCTTGGTCCCCTCCAGCTGCTCCTACCTTCTATAACATCGTCCCCGGCCACTCGGTaGGACTCAGTCTGGATCCGA | + |
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Preference number: 4 (lower is better) Translates to: PQPPLLGPLQLLLPSITSSPATR*DSVWIR Trigger: TCGGATCCAGACTGAGTCCCACCGAGTGGCCGGGGA...CGATGTTATAGAAGGTAGGAGCAGCTGGAGGGGACCAAGCAGAGGTGGCTGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR GCA 90 bp | GTGTATTTAGAGCAGGTCCTCCATAGCCGAGGGCTAATGGCCCACACTACTCCAGCGGCGCCGAGGGCTTaGCCATCTTCACCCACAGGA | + |
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Preference number: 4 (lower is better) Translates to: VYLEQVLHSRGLMAHTTPAAPRA*PSSPTG Trigger: TCCTGTGGGTGAAGATGGGCAAGCCCTCGGCGCCGC...TGGAGTAGTGTGGGCCATTAGCCCTCGGCTATGGAGGACCTGCTCTAAATACAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CCA 90 bp | TACTCCATGTGGCCTGCAGAGGGCAGTGTGCAGCCACGATGCTGCACCCTACCTTCTTCACCCACAGGATaGCCAAGAAGCCGAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: YSMWPAEGSVQPRCCTLPSSPTG*PRSRAA Trigger: TGCTGCTCGGCTTCTTGGCCATCCTGTGGGTGAAGA...AGGTAGGGTGCAGCATCGTGGCTGCACACTGCCCTCTGCAGGCCACATGGAGTA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CCA 90 bp | GTGGCCTGCAGAGGGCAGTGTGCAGCCACGATGCTGCACCCTACCTGTGTGGCTCGGTGGGACTCAGTCTaGATCCGAGATTCATTGGAA | + |
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Preference number: 4 (lower is better) Translates to: VACRGQCAATMLHPTCVARWDSV*IRDSLE Trigger: TTCCAATGAATCTCGGATCCAGACTGAGTCCCACCG...AGCCACACAGGTAGGGTGCAGCATCGTGGCTGCACACTGCCCTCTGCAGGCCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR GCA 90 bp | ACCTCCAGGGTTCCAACCACTGCCCATCTTTTTATCCAGGGAGAACAAGCCACTTGGAAGCCCAGGGCCTaGAGCTCTCGCCGCAACTCC | + |
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Preference number: 4 (lower is better) Translates to: TSRVPTTAHLFIQGEQATWKPRA*SSRRNS Trigger: GGAGTTGCGGCGAGAGCTGCAGGCCCTGGGCTTCCA...AGTGGCTTGTTCTCCCTGGATAAAAAGATGGGCAGTGGTTGGAACCCTGGAGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR GCA 90 bp | AATGGCCCACACTACTCCATGTGGCCTGCAGAGGGCAGTGTGCAGCCACGATGCTTAGCTATGTACTCCTaGGCCTCCAGGACTGGGATG | + |
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Preference number: 4 (lower is better) Translates to: NGPHYSMWPAEGSVQPRCLAMYS*ASRTGM Trigger: CATCCCAGTCCTGGAGGCGCAGGAGTACATAGCTAA...GCATCGTGGCTGCACACTGCCCTCTGCAGGCCACATGGAGTAGTGTGGGCCATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR GCA 90 bp | TACTCCATGTGGCCTGCAGAGGGCAGTGTGCAGCCACGATGCTGCACCCTACCTATCTCATACATGGCCTaGTCCTCCTCCTCCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: YSMWPAEGSVQPRCCTLPISYMA*SSSSSF Trigger: GAAGCTGGAGGAGGAGGAGCAGGCCATGTATGAGAT...AGGTAGGGTGCAGCATCGTGGCTGCACACTGCCCTCTGCAGGCCACATGGAGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CCA 90 bp | CTGTGTGCAGGACCTCCAGGGTTCCAACCACTGCCCATCTTTTTATCCAGGGAGGGGCCGCCTTCTGCTTaGCCTGGCAGAACTCATCTG | + |
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Preference number: 4 (lower is better) Translates to: LCAGPPGFQPLPIFLSREGPPSA*PGRTHL Trigger: CAGATGAGTTCTGCCAGGCCAAGCAGAAGGCGGCCC...CTCCCTGGATAAAAAGATGGGCAGTGGTTGGAACCCTGGAGGTCCTGCACACAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CCA 90 bp | CCCCAGCCACCTCTGCTTGGTCCCCTCCAGCTGCTCCTACCTTCTATAACATCGAAGAAGATGAGCACGTaGGTGACAGCGGTGAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: PQPPLLGPLQLLLPSITSKKMST*VTAVSR Trigger: CCTGCTCACCGCTGTCACCCACGTGCTCATCTTCTT...CGATGTTATAGAAGGTAGGAGCAGCTGGAGGGGACCAAGCAGAGGTGGCTGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CCA 90 bp | GTGTCTTCTGGAGGCAGCTGCACGTCACCTCCAGGGGCTGTCCTCCTGCTGCTGGGATCCGAGATTCATTaGAAGCCAGGAATTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: VSSGGSCTSPPGAVLLLLGSEIH*KPGIPQ Trigger: CTGTGGAATTCCTGGCTTCCAATGAATCTCGGATCC...CAGCAGCAGGAGGACAGCCCCTGGAGGTGACGTGCAGCTGCCTCCAGAAGACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR GCA 90 bp | GAAACAGAGACCAGCAATAGGTCCAAAAGGGGGTGTCTTGTGTCTTCTGGAGGCCCACGTCCTTGTTGCTaGTCAGGATCCAGGTCAGCG | + |
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Preference number: 4 (lower is better) Translates to: ETETSNRSKRGCLVSSGGPRPCC*SGSRSA Trigger: CGCTGACCTGGATCCTGAGCAGCAACAAGGACGTGG...GCCTCCAGAAGACACAAGACACCCCCTTTTGGACCTATTGCTGGTCTCTGTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR GCA 90 bp | AAGGGGGTGTCTTGTGTCTTCTGGAGGCAGCTGCACGTCACCTCCAGGGGCTGTACATTCAAAATTACCTaGCTGGATGGCCAGGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: KGVSCVFWRQLHVTSRGCTFKIT*LDGQEV Trigger: AACTTCCTGGCCATCCAGGCAGGTAATTTTGAATGT...ACAGCCCCTGGAGGTGACGTGCAGCTGCCTCCAGAAGACACAAGACACCCCCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR TCA 90 bp | GTGTATTTAGAGCAGGTCCTCCATAGCCGAGGGCTAATGGCCCACACTACTCCACCTGAACCACATCTATaGTCTTCTTCACCATCTCAT | + |
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Preference number: 4 (lower is better) Translates to: VYLEQVLHSRGLMAHTTPPEPHL*SSSPSH Trigger: ATGAGATGGTGAAGAAGATCATAGATGTGGTTCAGG...TGGAGTAGTGTGGGCCATTAGCCCTCGGCTATGGAGGACCTGCTCTAAATACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CCA 90 bp | AAACAGAGACCAGCAATAGGTCCAAAAGGGGGTGTCTTGTGTCTTCTGGAGGCAAATTACCTGCCTGGATaGCCAGGAAGTTGTACAGTT | + |
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Preference number: 4 (lower is better) Translates to: KQRPAIGPKGGVLCLLEANYLPG*PGSCTV Trigger: AACTGTACAACTTCCTGGCCATCCAGGCAGGTAATT...TGCCTCCAGAAGACACAAGACACCCCCTTTTGGACCTATTGCTGGTCTCTGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CCA 90 bp | GAGCATACTGCTACATGGAGACCACACTTTATTAAGAAACAGAGACCAGCAATATCACCATCTCATACATaGCCTGCTCCTCCTCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: EHTATWRPHFIKKQRPAISPSHT*PAPPPP Trigger: TGGAGGAGGAGGAGCAGGCCATGTATGAGATGGTGA...TATTGCTGGTCTCTGTTTCTTAATAAAGTGTGGTCTCCATGTAGCAGTATGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CCA 90 bp | GAGCATACTGCTACATGGAGACCACACTTTATTAAGAAACAGAGACCAGCAATAGCCTTCTGCTTGGCCTaGCAGAACTCATCTGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: EHTATWRPHFIKKQRPAIAFCLA*QNSSVF Trigger: AAAAACAGATGAGTTCTGCCAGGCCAAGCAGAAGGC...TATTGCTGGTCTCTGTTTCTTAATAAAGTGTGGTCTCCATGTAGCAGTATGCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CAA 90 bp | CTTGTGTCTTCTGGAGGCAGCTGCACGTCACCTCCAGGGGCTGTCCTCCTGCTGTGCGGCGCCGAGGGCTaGCCCATCTTCACCCACAGG | + |
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Preference number: 5 (lower is better) Translates to: LVSSGGSCTSPPGAVLLLCGAEG*PIFTHR Trigger: CCTGTGGGTGAAGATGGGCAAGCCCTCGGCGCCGCA...CAGCAGGAGGACAGCCCCTGGAGGTGACGTGCAGCTGCCTCCAGAAGACACAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CAA 90 bp | GTGGCCTGCAGAGGGCAGTGTGCAGCCACGATGCTGCACCCTACCTGTGTGGCTAGGGCCGCCTTCTGCTaGGCCTGGCAGAACTCATCT | + |
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Preference number: 5 (lower is better) Translates to: VACRGQCAATMLHPTCVARAAFC*AWQNSS Trigger: AGATGAGTTCTGCCAGGCCAAGCAGAAGGCGGCCCT...AGCCACACAGGTAGGGTGCAGCATCGTGGCTGCACACTGCCCTCTGCAGGCCAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS GCA 90 bp | GCAACAATTTCATGTTGTCCTCCGCCTCCTGCGGCGCCGAGGGCTTaGCCATCTTCACCCACAGGATGGCCAAGAAGCCGAGCAGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: ATISCCPPPPAAPRA*PSSPTGWPRSRAAA Trigger: GGCTGCTGCTCGGCTTCTTGGCCATCCTGTGGGTGAAGATGGGCAAGCCCTCGGCGCCGCAGGAGGCGGAGGACAACATGAAATTGTTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CAA 90 bp | GTGTCTTCTGGAGGCAGCTGCACGTCACCTCCAGGGGCTGTCCTCCTGCTGCTGGGCAACAATTTCATGTaGTCCTCCGCCTCCTGCGGC | + |
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Preference number: 5 (lower is better) Translates to: VSSGGSCTSPPGAVLLLLGNNFM*SSASCG Trigger: GCCGCAGGAGGCGGAGGACAACATGAAATTGTTGCC...CAGCAGCAGGAGGACAGCCCCTGGAGGTGACGTGCAGCTGCCTCCAGAAGACAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS GCA 90 bp | CTCTCACAGTCGACCGGCAACAATTTCATGTTGTCCTCCGCCTCCTaGGGCGCCGAGGGCTTGCCCATCTTCACCCACAGGATGGCCAAG | + |
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Preference number: 5 (lower is better) Translates to: LSQSTGNNFMLSSAS*GAEGLPIFTHRMAK Trigger: CTTGGCCATCCTGTGGGTGAAGATGGGCAAGCCCTCGGCGCCGCAGGAGGCGGAGGACAACATGAAATTGTTGCCGGTCGACTGTGAGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CAA 90 bp | CTTGTGTCTTCTGGAGGCAGCTGCACGTCACCTCCAGGGGCTGTCCTCCTGCTGTCCAGGCAGACCACTTaGTCCACTGTAGTCGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: LVSSGGSCTSPPGAVLLLSRQTT*STVVAS Trigger: GCTGGCGACTACAGTGGACAAAGTGGTCTGCCTGGA...CAGCAGGAGGACAGCCCCTGGAGGTGACGTGCAGCTGCCTCCAGAAGACACAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CCA 90 bp | CTCCACACCAGCATGTCCTCCCCGGCCACTCGGTGGGACTCAGTCTaGATCCGAGATTCATTGGAAGCCAGGAATTCCACAGCACGGTCC | + |
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Preference number: 5 (lower is better) Translates to: LHTSMSSPATRWDSV*IRDSLEARNSTARS Trigger: GGACCGTGCTGTGGAATTCCTGGCTTCCAATGAATCTCGGATCCAGACTGAGTCCCACCGAGTGGCCGGGGAGGACATGCTGGTGTGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CAA 90 bp | TACTCCATGTGGCCTGCAGAGGGCAGTGTGCAGCCACGATGCTGCACCCTACCTCAGATGCCCACGTCCTaGTTGCTGCTCAGGATCCAG | + |
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Preference number: 5 (lower is better) Translates to: YSMWPAEGSVQPRCCTLPQMPTS*LLLRIQ Trigger: CTGGATCCTGAGCAGCAACAAGGACGTGGGCATCTG...AGGTAGGGTGCAGCATCGTGGCTGCACACTGCCCTCTGCAGGCCACATGGAGTA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CCA 90 bp | CCTCCCCGGCCACTCGGTGGGACTCAGTCTGGATCCGAGATTCATTaGAAGCCAGGAATTCCACAGCACGGTCCCATACTCGCTTCATGC | + |
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Preference number: 5 (lower is better) Translates to: PPRPLGGTQSGSEIH*KPGIPQHGPILASC Trigger: GCATGAAGCGAGTATGGGACCGTGCTGTGGAATTCCTGGCTTCCAATGAATCTCGGATCCAGACTGAGTCCCACCGAGTGGCCGGGGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CAA 90 bp | CCATCTTTTTATCCAGGGAGAACAAGCCACTCTCCCCTGTCAGTCAGTAATACTGCGGAGGCCCCGAAGTaGCCGTACGGCCCCGAGGCG | + |
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Preference number: 5 (lower is better) Translates to: PSFYPGRTSHSPLSVSNTAEAPK*PYGPEA Trigger: CGCCTCGGGGCCGTACGGCAACTTCGGGGCCTCCGC...AGTATTACTGACTGACAGGGGAGAGTGGCTTGTTCTCCCTGGATAAAAAGATGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CAA 90 bp | CCTCCTGCTGCTGTAGGTGAGACCCGCCTGAAGAGTTGCTCGAAAGCCTCCCTCTGGATGGCCAGGAAGTaGTACAGTTCGTGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: PPAAVGETRLKSCSKASLWMARK*YSSCSS Trigger: GCTGCTGCACGAACTGTACAACTTCCTGGCCATCCA...GAGGGAGGCTTTCGAGCAACTCTTCAGGCGGGTCTCACCTACAGCAGCAGGAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS GCA 90 bp | GCTGACCTCGAAGAGGGACTGCTGGTCACATTAGCTATGTACTCCTaGGCCTCCAGGACTGGGATGCACTTGCTCTTCAGCTTCTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: ADLEEGLLVTLAMYS*ASRTGMHLLFSFSG Trigger: CCCGGAGAAGCTGAAGAGCAAGTGCATCCCAGTCCTGGAGGCGCAGGAGTACATAGCTAATGTGACCAGCAGTCCCTCTTCGAGGTCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237257.2 |
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| CDS CCA 90 bp | GGCTTAGTCCATCTCCACACCAGCATGTCCTCCCCGGCCACTCGGTaGGACTCAGTCTGGATCCGAGATTCATTGGAAGCCAGGAATTCC | + |
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Preference number: 5 (lower is better) Translates to: GLVHLHTSMSSPATR*DSVWIRDSLEARNS Trigger: GGAATTCCTGGCTTCCAATGAATCTCGGATCCAGACTGAGTCCCACCGAGTGGCCGGGGAGGACATGCTGGTGTGGAGATGGACTAAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS GCA 90 bp | CATTCAAAATTACCTGCCTGGATGGCCAGGAAGTTGTACAGTTCGTaGAGCAGCTCCAACAGGGCCGCCTTCTGCTTGGCCTGGCAGAAC | + |
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Preference number: 5 (lower is better) Translates to: HSKLPAWMARKLYSS*SSSNRAAFCLAWQN Trigger: GTTCTGCCAGGCCAAGCAGAAGGCGGCCCTGTTGGAGCTGCTGCACGAACTGTACAACTTCCTGGCCATCCAGGCAGGTAATTTTGAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055117.9 ENSMUST00000237257.2 |
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| CDS GCA 90 bp | TTAAACCTCGAAGAGGGACTGCTGGTCACATTAGCTATGTACTCCTaGGCCTCCAGGACTGGGATGCACTTGCTCTTCAGCTTCTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: LNLEEGLLVTLAMYS*ASRTGMHLLFSFSG Trigger: CCCGGAGAAGCTGAAGAGCAAGTGCATCCCAGTCCTGGAGGCGCAGGAGTACATAGCTAATGTGACCAGCAGTCCCTCTTCGAGGTTTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS-3UTR CAA 90 bp | AAACAGAGACCAGCAATAGGTCCAAAAGGGGGTGTCTTGTGTCTTCTGGAGGCAATGCCCACGTCCTTGTaGCTGCTCAGGATCCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: KQRPAIGPKGGVLCLLEAMPTSL*LLRIQV Trigger: GACCTGGATCCTGAGCAGCAACAAGGACGTGGGCAT...TGCCTCCAGAAGACACAAGACACCCCCTTTTGGACCTATTGCTGGTCTCTGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CAA 90 bp | GAGAGGCCGCGGCTCGCGGCCCAGGGAGAGGCGGAGGCCCCGAAGTaGCCGTACGGCCCCGAGGCGTCGGAGGCCGCGCTAGGCGCCGGC | + |
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Preference number: 6 (lower is better) Translates to: ERPRLAAQGEAEAPK*PYGPEASEAALGAG Trigger: GCCGGCGCCTAGCGCGGCCTCCGACGCCTCGGGGCCGTACGGCAACTTCGGGGCCTCCGCCTCTCCCTGGGCCGCGAGCCGCGGCCTCTC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CAA 72 bp | CGGCTCGCGGCCCAGGGAGAGGCGGAGGCCCCGAAGTaGCCGTACGGCCCCGAGGCGTCGGAGGCCGCGCTA | + |
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Preference number: 6 (lower is better) Translates to: RLAAQGEAEAPK*PYGPEASEAAL Trigger: TAGCGCGGCCTCCGACGCCTCGGGGCCGTACGGCAACTTCGGGGCCTCCGCCTCTCCCTGGGCCGCGAGCCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS GCA 72 bp | TGTCCGGCGTTCGTGTATCCTCGTCATCCTCCGAGCTaGCCCGGACCGAGGCGCGGCGTCGCAGCGGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: CPAFVYPRHPPS*PGPRRGVAAAR Trigger: CCGGGCCGCTGCGACGCCGCGCCTCGGTCCGGGGCAGCTCGGAGGATGACGAGGATACACGAACGCCGGACA 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS GCA 72 bp | GTGTCGGTGATGGGGCCTGGCTGGAAGCCCAGGGCCTaGAGCTCTCGCCGCAACTCCAGGTCCGACAGGCCG | + |
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Preference number: 6 (lower is better) Translates to: VSVMGPGWKPRA*SSRRNSRSDRP Trigger: CGGCCTGTCGGACCTGGAGTTGCGGCGAGAGCTGCAGGCCCTGGGCTTCCAGCCAGGCCCCATCACCGACAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CCA 72 bp | CACAGGAAGGCCAGGCACCAGAAGAAGATGAGCACGTaGGTGACAGCGGTGAGCAGGGCGCGGCTGAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: HRKARHQKKMST*VTAVSRARLRR Trigger: CCGCCTCAGCCGCGCCCTGCTCACCGCTGTCACCCACGTGCTCATCTTCTTCTGGTGCCTGGCCTTCCTGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CAA 72 bp | CCCATCCGGGGCCGGGCGGACTCCAGGCAGACCACTTaGTCCACTGTAGTCGCCAGCTCAGATGGGTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: PIRGRADSRQTT*STVVASSDGSS Trigger: GGAAGACCCATCTGAGCTGGCGACTACAGTGGACAAAGTGGTCTGCCTGGAGTCCGCCCGGCCCCGGATGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CAA 72 bp | TTCATGTTGTCCTCCGCCTCCTGCGGCGCCGAGGGCTaGCCCATCTTCACCCACAGGATGGCCAAGAAGCCG | + |
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Preference number: 6 (lower is better) Translates to: FMLSSASCGAEG*PIFTHRMAKKP Trigger: CGGCTTCTTGGCCATCCTGTGGGTGAAGATGGGCAAGCCCTCGGCGCCGCAGGAGGCGGAGGACAACATGAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CAA 90 bp | CAGCCTATGCCCATCCGGGGCCGGGCGGACTCCAGGCAGACCACTTaGTCCACTGTAGTCGCCAGCTCAGATGGGTCTTCCCCTTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: QPMPIRGRADSRQTT*STVVASSDGSSPFS Trigger: GCTGAAAGGGGAAGACCCATCTGAGCTGGCGACTACAGTGGACAAAGTGGTCTGCCTGGAGTCCGCCCGGCCCCGGATGGGCATAGGCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CAA 90 bp | GGCAACAATTTCATGTTGTCCTCCGCCTCCTGCGGCGCCGAGGGCTaGCCCATCTTCACCCACAGGATGGCCAAGAAGCCGAGCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GNNFMLSSASCGAEG*PIFTHRMAKKPSSS Trigger: GCTGCTGCTCGGCTTCTTGGCCATCCTGTGGGTGAAGATGGGCAAGCCCTCGGCGCCGCAGGAGGCGGAGGACAACATGAAATTGTTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS GCA 72 bp | TCGACCGGCAACAATTTCATGTTGTCCTCCGCCTCCTaGGGCGCCGAGGGCTTGCCCATCTTCACCCACAGG | + |
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Preference number: 6 (lower is better) Translates to: STGNNFMLSSAS*GAEGLPIFTHR Trigger: CCTGTGGGTGAAGATGGGCAAGCCCTCGGCGCCGCAGGAGGCGGAGGACAACATGAAATTGTTGCCGGTCGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS GCA 72 bp | TTACCTGCCTGGATGGCCAGGAAGTTGTACAGTTCGTaGAGCAGCTCCAACAGGGCCGCCTTCTGCTTGGCC | + |
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Preference number: 6 (lower is better) Translates to: LPAWMARKLYSS*SSSNRAAFCLA Trigger: GGCCAAGCAGAAGGCGGCCCTGTTGGAGCTGCTGCACGAACTGTACAACTTCCTGGCCATCCAGGCAGGTAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055117.9 ENSMUST00000237257.2 |
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| CDS CCA 72 bp | CATCTCCACACCAGCATGTCCTCCCCGGCCACTCGGTaGGACTCAGTCTGGATCCGAGATTCATTGGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: HLHTSMSSPATR*DSVWIRDSLEA Trigger: GGCTTCCAATGAATCTCGGATCCAGACTGAGTCCCACCGAGTGGCCGGGGAGGACATGCTGGTGTGGAGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS GCA 72 bp | TCGCCAGCTCAGATGGGTCTTCCCCTTTCAGCCAGATaGCCACGTCCTTGTTGCTGCTCAGGATCCAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: SPAQMGLPLSAR*PRPCCCSGSRS Trigger: TGACCTGGATCCTGAGCAGCAACAAGGACGTGGGCATCTGGCTGAAAGGGGAAGACCCATCTGAGCTGGCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CAA 72 bp | GGGTCTTCCCCTTTCAGCCAGATGCCCACGTCCTTGTaGCTGCTCAGGATCCAGGTCAGCGCAGCCTTAAAC | + |
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Preference number: 6 (lower is better) Translates to: GSSPFSQMPTSL*LLRIQVSAALN Trigger: GTTTAAGGCTGCGCTGACCTGGATCCTGAGCAGCAACAAGGACGTGGGCATCTGGCTGAAAGGGGAAGACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CAA 90 bp | AGCTCAGATGGGTCTTCCCCTTTCAGCCAGATGCCCACGTCCTTGTaGCTGCTCAGGATCCAGGTCAGCGCAGCCTTAAACCTCGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: SSDGSSPFSQMPTSL*LLRIQVSAALNLEE Trigger: CTCTTCGAGGTTTAAGGCTGCGCTGACCTGGATCCTGAGCAGCAACAAGGACGTGGGCATCTGGCTGAAAGGGGAAGACCCATCTGAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS CCA 72 bp | AGCATGTCCTCCCCGGCCACTCGGTGGGACTCAGTCTaGATCCGAGATTCATTGGAAGCCAGGAATTCCACA | + |
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Preference number: 6 (lower is better) Translates to: SMSSPATRWDSV*IRDSLEARNST Trigger: TGTGGAATTCCTGGCTTCCAATGAATCTCGGATCCAGACTGAGTCCCACCGAGTGGCCGGGGAGGACATGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS GCA 72 bp | GAAGAGGGACTGCTGGTCACATTAGCTATGTACTCCTaGGCCTCCAGGACTGGGATGCACTTGCTCTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: EEGLLVTLAMYS*ASRTGMHLLFS Trigger: GCTGAAGAGCAAGTGCATCCCAGTCCTGGAGGCGCAGGAGTACATAGCTAATGTGACCAGCAGTCCCTCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055117.9 ENSMUST00000237257.2 |
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| CDS CCA 72 bp | CCACTCGGTGGGACTCAGTCTGGATCCGAGATTCATTaGAAGCCAGGAATTCCACAGCACGGTCCCATACTC | + |
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Preference number: 6 (lower is better) Translates to: PLGGTQSGSEIH*KPGIPQHGPIL Trigger: GAGTATGGGACCGTGCTGTGGAATTCCTGGCTTCCAATGAATCTCGGATCCAGACTGAGTCCCACCGAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055117.9 |
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| CDS GCA 72 bp | TACAGTTCGTGCAGCAGCTCCAACAGGGCCGCCTTCTaGTTGGCCTGGCAGAACTCATCTGTTTTTCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: YSSCSSSNRAAF*LAWQNSSVFLS Trigger: TGAGAGAAAAACAGATGAGTTCTGCCAGGCCAAGCAGAAGGCGGCCCTGTTGGAGCTGCTGCACGAACTGTA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055117.9 ENSMUST00000237257.2 |
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| CDS CAA 72 bp | AGGACTGGGATGCACTTGCTCTTCAGCTTCTCCGGGTaGCCACATTCAAAATTACCTGCCTGGATGGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: RTGMHLLFSFSG*PHSKLPAWMAR Trigger: CCTGGCCATCCAGGCAGGTAATTTTGAATGTGGCAACCCGGAGAAGCTGAAGAGCAAGTGCATCCCAGTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055117.9 ENSMUST00000237257.2 |
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| CDS CAA 72 bp | GCTATGTACTCCTGCGCCTCCAGGACTGGGATGCACTaGCTCTTCAGCTTCTCCGGGTTGCCACATTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: AMYSCASRTGMH*LFSFSGLPHSK Trigger: TTTTGAATGTGGCAACCCGGAGAAGCTGAAGAGCAAGTGCATCCCAGTCCTGGAGGCGCAGGAGTACATAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055117.9 ENSMUST00000237257.2 |
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| CDS GCA 72 bp | CTATGTACTCCTGCGCCTCCAGGACTGGGATGCACTTaGTCTTCAGCTTCTCCGGGTTGCCACATTCAAAAT | + |
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Preference number: 6 (lower is better) Translates to: LCTPAPPGLGCT*SSASPGCHIQN Trigger: ATTTTGAATGTGGCAACCCGGAGAAGCTGAAGAGCAAGTGCATCCCAGTCCTGGAGGCGCAGGAGTACATAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055117.9 ENSMUST00000237257.2 |
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| CDS CCA 72 bp | TCTCCGGGTTGCCACATTCAAAATTACCTGCCTGGATaGCCAGGAAGTTGTACAGTTCGTGCAGCAGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SPGCHIQNYLPG*PGSCTVRAAAP Trigger: TGGAGCTGCTGCACGAACTGTACAACTTCCTGGCCATCCAGGCAGGTAATTTTGAATGTGGCAACCCGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055117.9 ENSMUST00000237257.2 |
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| CDS CAA 90 bp | GTCACATTAGCTATGTACTCCTGCGCCTCCAGGACTGGGATGCACTaGCTCTTCAGCTTCTCCGGGTTGCCACATTCAAAATTACCTGCC | + |
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Preference number: 6 (lower is better) Translates to: VTLAMYSCASRTGMH*LFSFSGLPHSKLPA Trigger: GGCAGGTAATTTTGAATGTGGCAACCCGGAGAAGCTGAAGAGCAAGTGCATCCCAGTCCTGGAGGCGCAGGAGTACATAGCTAATGTGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055117.9 ENSMUST00000237257.2 |
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