Pregenerated sensors for LEFTY2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066652Ensembl transcript IDs: ENSMUST00000085797.6
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGAAATGGGAACAACGGTTTTTCACAAGGAGCTGCCGCAGGCTTCTaGGATGTCTCCCTCCCAGCCTGCTGTGGGCAGTCCCTGACATGG | + |
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Preference number: 1 (lower is better) Translates to: RNGNNGFSQGAAAGF*DVSLPACCGQSLTW Trigger: CCATGTCAGGGACTGCCCACAGCAGGCTGGGAGGGAGACATCTCAGAAGCCTGCGGCAGCTCCTTGTGAAAAACCGTTGTTCCCATTTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR GCA 90 bp | GGGGTCAGTGTGTCCTACTGGAGTGACATGATTTACCCATGTAAGTaGTTAAACTGGGTGATGGACAAGAAAACCAAGACTGTAGAGCAA | + |
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Preference number: 1 (lower is better) Translates to: GVSVSYWSDMIYPCK*LNWVMDKKTKTVEQ Trigger: TTGCTCTACAGTCTTGGTTTTCTTGTCCATCACCCAGTTTAAGCACTTACATGGGTAAATCATGTCACTCCAGTAGGACACACTGACCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR CCA 90 bp | GTGTCCTACTGGAGTGACATGATTTACCCATGTAAGTGCTTAAACTaGGTGATGGACAAGAAAACCAAGACTGTAGAGCAAAGGTCTGAC | + |
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Preference number: 1 (lower is better) Translates to: VSYWSDMIYPCKCLN*VMDKKTKTVEQRSD Trigger: GTCAGACCTTTGCTCTACAGTCTTGGTTTTCTTGTCCATCACCCAGTTTAAGCACTTACATGGGTAAATCATGTCACTCCAGTAGGACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR TCA 90 bp | CTGCTTCTGCACATTGCACGCAGTGACCCTCCTAAGAGTCCCGGTGTTTTGGCTGCTGCCGCAGGCTTCTaGGATGTCTCCCTCCCAGCC | + |
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Preference number: 2 (lower is better) Translates to: LLLHIARSDPPKSPGVLAAAAGF*DVSLPA Trigger: GGCTGGGAGGGAGACATCTCAGAAGCCTGCGGCAGC...AGCCAAAACACCGGGACTCTTAGGAGGGTCACTGCGTGCAATGTGCAGAAGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR GCA 90 bp | CTTAACTCGGCAGTTCTGCCAGCTTTCTGCTTCTGCACATTGCACGCAGTGACCATCAGGACTGTGCTGTaGTGTGTCCCATGCCTCAAC | + |
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Preference number: 2 (lower is better) Translates to: LNSAVLPAFCFCTLHAVTIRTVL*CVPCLN Trigger: GTTGAGGCATGGGACACAGCACAGCACAGTCCTGAT...GGTCACTGCGTGCAATGTGCAGAAGCAGAAAGCTGGCAGAACTGCCGAGTTAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR CAA 90 bp | TACACCCTTAACTCGGCAGTTCTGCCAGCTTTCTGCTTCTGCACATaGCACGCAGTGACCCTCCTAAGAGTCCCGGTGTTTTGGCTTAGT | + |
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Preference number: 2 (lower is better) Translates to: YTLNSAVLPAFCFCT*HAVTLLRVPVFWLS Trigger: ACTAAGCCAAAACACCGGGACTCTTAGGAGGGTCACTGCGTGCAATGTGCAGAAGCAGAAAGCTGGCAGAACTGCCGAGTTAAGGGTGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR CCA 90 bp | CACACAGAATACATCTACAGCATGCACCTGGGCCATCAGGACTGTGCTGTGCTGGTCAGTGTGTCCTACTaGAGTGACATGATTTACCCA | + |
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Preference number: 2 (lower is better) Translates to: HTEYIYSMHLGHQDCAVLVSVSY*SDMIYP Trigger: TGGGTAAATCATGTCACTCCAGTAGGACACACTGAC...CAGCACAGCACAGTCCTGATGGCCCAGGTGCATGCTGTAGATGTATTCTGTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR TCA 90 bp | GATAAGAGCACACAGAATACATCTACAGCATGCACCTGGGCCATCAGGACTGTGAACACCAAGGCCAACTaGAAAGCAGTCACACACATG | + |
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Preference number: 2 (lower is better) Translates to: DKSTQNTSTACTWAIRTVNTKAN*KAVTHM Trigger: CATGTGTGTGACTGCTTTTCAGTTGGCCTTGGTGTT...CACAGTCCTGATGGCCCAGGTGCATGCTGTAGATGTATTCTGTGTGCTCTTATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR TCA 90 bp | AGAATTATAATTGTTCCCCCAGAGTTTCAAGCTTCCCCTATTCCCAGGCCTCTGTTAGGACAAGCTCACTaGGAATACATCTGTGGACAG | + |
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Preference number: 2 (lower is better) Translates to: RIIIVPPEFQASPIPRPLLGQAH*EYICGQ Trigger: CTGTCCACAGATGTATTCTCAGTGAGCTTGTCCTAA...CAGAGGCCTGGGAATAGGGGAAGCTTGAAACTCTGGGGGAACAATTATAATTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR GCA 90 bp | GATAAGAGCACACAGAATACATCTACAGCATGCACCTGGGCCATCAGGACTGTGATTTACCCATGTAAGTaGTTAAACTGGGTGATGGAC | + |
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Preference number: 2 (lower is better) Translates to: DKSTQNTSTACTWAIRTVIYPCK*LNWVMD Trigger: GTCCATCACCCAGTTTAAGCACTTACATGGGTAAAT...CACAGTCCTGATGGCCCAGGTGCATGCTGTAGATGTATTCTGTGTGCTCTTATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR GCA 90 bp | GCATTTTCCCGTGAAGCTCTGACAATAAATGACATGGGCAAAGCTGCCAGGCAACTGTGCTGTGTCCCATaGCTCAACTTTTTAATTGTT | + |
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Preference number: 2 (lower is better) Translates to: AFSREALTINDMGKAARQLCCVP*LNFLIV Trigger: AACAATTAAAAAGTTGAGGCATGGGACACAGCACAG...TTGCCTGGCAGCTTTGCCCATGTCATTTATTGTCAGAGCTTCACGGGAAAATGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR TCA 90 bp | TCAAGAATTATAATTGTTCCCCCAGAGTTTCAAGCTTCCCCTATTCCCAGGCCTTGTTGTACATTAAGCTaGGTTCTGGCCAGAAAACAG | + |
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Preference number: 2 (lower is better) Translates to: SRIIIVPPEFQASPIPRPCCTLS*VLARKQ Trigger: CTGTTTTCTGGCCAGAACTCAGCTTAATGTACAACA...AGGCCTGGGAATAGGGGAAGCTTGAAACTCTGGGGGAACAATTATAATTCTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR GCA 90 bp | GAATCAAGAATTATAATTGTTCCCCCAGAGTTTCAAGCTTCCCCTATTCCCAGGGAAAACAGACTCAGATaGGAACCTGTTCACTGCATA | + |
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Preference number: 2 (lower is better) Translates to: ESRIIIVPPEFQASPIPRENRLR*EPVHCI Trigger: TATGCAGTGAACAGGTTCGCATCTGAGTCTGTTTTC...CCTGGGAATAGGGGAAGCTTGAAACTCTGGGGGAACAATTATAATTCTTGATTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR CCA 90 bp | GAATCAAGAATTATAATTGTTCCCCCAGAGTTTCAAGCTTCCCCTATTCCCAGGAGAGTCCCGGTGTTTTaGCTTAGTTTTACTAATATA | + |
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Preference number: 2 (lower is better) Translates to: ESRIIIVPPEFQASPIPRRVPVF*LSFTNI Trigger: TATATTAGTAAAACTAAGCCAAAACACCGGGACTCT...CCTGGGAATAGGGGAAGCTTGAAACTCTGGGGGAACAATTATAATTCTTGATTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR TCA 72 bp | AACAACGGTTTTTCACAAGGAGCTGCCGCAGGCTTCTaGGATGTCTCCCTCCCAGCCTGCTGTGGGCAGTCC | + |
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Preference number: 3 (lower is better) Translates to: NNGFSQGAAAGF*DVSLPACCGQS Trigger: GGACTGCCCACAGCAGGCTGGGAGGGAGACATCTCAGAAGCCTGCGGCAGCTCCTTGTGAAAAACCGTTGTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR CAA 90 bp | TCCCTCCCAGCCTGCTGTGGGCAGTCCCTGACATGGTACGTTGATGCCAGTAATTGCATAGCCATGTCCTaGGCTAAGTGGGGTCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: SLPACCGQSLTWYVDASNCIAMS*AKWGQC Trigger: ACACTGACCCCACTTAGCCAAGGACATGGCTATGCA...ATTACTGGCATCAACGTACCATGTCAGGGACTGCCCACAGCAGGCTGGGAGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR GCA 72 bp | ACCCTTAACTCGGCAGTTCTGCCAGCTTTCTGCTTCTaGACATTGCACGCAGTGACCCTCCTAAGAGTCCCG | + |
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Preference number: 3 (lower is better) Translates to: TLNSAVLPAFCF*TLHAVTLLRVP Trigger: CGGGACTCTTAGGAGGGTCACTGCGTGCAATGTGCAGAAGCAGAAAGCTGGCAGAACTGCCGAGTTAAGGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR CCA 72 bp | GTCTCCCTCCCAGCCTGCTGTGGGCAGTCCCTGACATaGTACGTTGATGCCAGTAATCACGGTGTAAGAGTA | + |
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Preference number: 3 (lower is better) Translates to: VSLPACCGQSLT*YVDASNHGVRV Trigger: TACTCTTACACCGTGATTACTGGCATCAACGTACCATGTCAGGGACTGCCCACAGCAGGCTGGGAGGGAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR GCA 72 bp | AGGTACACCCTTAACTCGGCAGTTCTGCCAGCTTTCTaGTTCTGCACATTGCACGCAGTGACCCTCCTAAGA | + |
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Preference number: 3 (lower is better) Translates to: RYTLNSAVLPAF*FCTLHAVTLLR Trigger: TCTTAGGAGGGTCACTGCGTGCAATGTGCAGAAGCAGAAAGCTGGCAGAACTGCCGAGTTAAGGGTGTACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR CCA 72 bp | GATAAGAGCACACAGAATACATCTACAGCATGCACCTaGGCCATCAGGACTGTGCTGTGCTGTGTCCCATGC | + |
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Preference number: 3 (lower is better) Translates to: DKSTQNTSTACT*AIRTVLCCVPC Trigger: GCATGGGACACAGCACAGCACAGTCCTGATGGCCCAGGTGCATGCTGTAGATGTATTCTGTGTGCTCTTATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR GCA 72 bp | TGGCCAGAAAACAGACTCAGATGCGAACCTGTTCACTaGATAGCCATGTCCTTGGCTAAGTGGGGTCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: WPENRLRCEPVH*IAMSLAKWGQC Trigger: ACACTGACCCCACTTAGCCAAGGACATGGCTATGCAGTGAACAGGTTCGCATCTGAGTCTGTTTTCTGGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR-3UTR CAA 90 bp | CTTAACTCGGCAGTTCTGCCAGCTTTCTGCTTCTGCACATTGCACGCAGTGACCAAATCTATACAGCTCTaGTCTAGGGCTAAGGTTAGG | + |
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Preference number: 3 (lower is better) Translates to: LNSAVLPAFCFCTLHAVTKSIQL*SRAKVR Trigger: CCTAACCTTAGCCCTAGACAAGAGCTGTATAGATTT...GGTCACTGCGTGCAATGTGCAGAAGCAGAAAGCTGGCAGAACTGCCGAGTTAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR TCA 72 bp | CCTGTTCTCACCGTAGGGTTTTGTTGTACATTAAGCTaGGTTCTGGCCAGAAAACAGACTCAGATGCGAACC | + |
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Preference number: 3 (lower is better) Translates to: PVLTVGFCCTLS*VLARKQTQMRT Trigger: GGTTCGCATCTGAGTCTGTTTTCTGGCCAGAACTCAGCTTAATGTACAACAAAACCCTACGGTGAGAACAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR GCA 90 bp | TCCCTCCCAGCCTGCTGTGGGCAGTCCCTGACATGGTACGTTGATGCCAGTAATTTCCTCGGTCATCGCTaGCCCAGGGCCAGCCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: SLPACCGQSLTWYVDASNFLGHR*PRASQG Trigger: CCCCTGGCTGGCCCTGGGGCAGCGATGACCGAGGAA...ATTACTGGCATCAACGTACCATGTCAGGGACTGCCCACAGCAGGCTGGGAGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR TCA 90 bp | TGGGCCATCAGGACTGTGCTGTGCTGTGTCCCATGCCTCAACTTTTTAATTGTTCGGGAGCGGTCAGCGTaGCTTCCCTGCAGCAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: WAIRTVLCCVPCLNFLIVRERSA*LPCSRA Trigger: GGCCCTGCTGCAGGGAAGTCACGCTGACCGCTCCCG...AACAATTAAAAAGTTGAGGCATGGGACACAGCACAGCACAGTCCTGATGGCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR GCA 90 bp | CTTAACTCGGCAGTTCTGCCAGCTTTCTGCTTCTGCACATTGCACGCAGTGACCGGGGCCTGGCTGAGCTaGAGCTGCTGCAGTAGACTG | + |
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Preference number: 4 (lower is better) Translates to: LNSAVLPAFCFCTLHAVTGAWLS*SCCSRL Trigger: CAGTCTACTGCAGCAGCTGCAGCTCAGCCAGGCCCC...GGTCACTGCGTGCAATGTGCAGAAGCAGAAAGCTGGCAGAACTGCCGAGTTAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR GCA 90 bp | GATAAGAGCACACAGAATACATCTACAGCATGCACCTGGGCCATCAGGACTGTGACGGACCAACTTGTGTaGGCTCCAGGTCCCCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: DKSTQNTSTACTWAIRTVTDQLV*APGPRP Trigger: GGGCCGGGGACCTGGAGCGCACACAAGTTGGTCCGT...CACAGTCCTGATGGCCCAGGTGCATGCTGTAGATGTATTCTGTGTGCTCTTATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR GCA 90 bp | ACACACATGAAATCTATACAGCTCTTGTCTAGGGCTAAGGTTAGGAGAAATGGGAGCTGTGGCTCGCCCTaGCCCTTGCCGTCCGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: THMKSIQLLSRAKVRRNGSCGSP*PLPSGV Trigger: GACGCCGGACGGCAAGGGGCAGGGCGAGCCACAGCT...CCCATTTCTCCTAACCTTAGCCCTAGACAAGAGCTGTATAGATTTCATGTGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR CCA 90 bp | TCCCTCCCAGCCTGCTGTGGGCAGTCCCTGACATGGTACGTTGATGCCAGTAATACCTCTCGAAAATTCTaGCTGAACCTCTTGCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: SLPACCGQSLTWYVDASNTSRKF*LNLLPR Trigger: CCGAGGCAAGAGGTTCAGCCAGAATTTTCGAGAGGT...ATTACTGGCATCAACGTACCATGTCAGGGACTGCCCACAGCAGGCTGGGAGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| 3UTR CAA 72 bp | AACTCGGCAGTTCTGCCAGCTTTCTGCTTCTGCACATaGCACGCAGTGACCCTCCTAAGAGTCCCGGTGTTT | + |
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Preference number: 4 (lower is better) Translates to: NSAVLPAFCFCT*HAVTLLRVPVF Trigger: AAACACCGGGACTCTTAGGAGGGTCACTGCGTGCAATGTGCAGAAGCAGAAAGCTGGCAGAACTGCCGAGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR GCA 90 bp | TGGGCCATCAGGACTGTGCTGTGCTGTGTCCCATGCCTCAACTTTTTAATTGTTGGGCAGTACCCAGAGTaGCCAGCAAAGCCACAGGGA | + |
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Preference number: 4 (lower is better) Translates to: WAIRTVLCCVPCLNFLIVGQYPE*PAKPQG Trigger: TCCCTGTGGCTTTGCTGGGCACTCTGGGTACTGCCC...AACAATTAAAAAGTTGAGGCATGGGACACAGCACAGCACAGTCCTGATGGCCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR GCA 90 bp | GATAAGAGCACACAGAATACATCTACAGCATGCACCTGGGCCATCAGGACTGTGTGGCTGAGCTGCAGCTaGTGCAGTAGACTGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: DKSTQNTSTACTWAIRTVWLSCS*CSRLLR Trigger: CCTGAGCAGTCTACTGCAGCAGCTGCAGCTCAGCCA...CACAGTCCTGATGGCCCAGGTGCATGCTGTAGATGTATTCTGTGTGCTCTTATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR CCA 90 bp | GAATCAAGAATTATAATTGTTCCCCCAGAGTTTCAAGCTTCCCCTATTCCCAGGGTGCAGCTCCAGCTGTaGCTCGCCCTGCCCCTTGCC | + |
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Preference number: 4 (lower is better) Translates to: ESRIIIVPPEFQASPIPRVQLQL*LALPLA Trigger: GGCAAGGGGCAGGGCGAGCCACAGCTGGAGCTGCAC...CCTGGGAATAGGGGAAGCTTGAAACTCTGGGGGAACAATTATAATTCTTGATTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR GCA 90 bp | GCATTTTCCCGTGAAGCTCTGACAATAAATGACATGGGCAAAGCTGCCAGGCAAAGGGACTCTGGTAGCTaGAGGCAGCTGCCCACACAT | + |
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Preference number: 4 (lower is better) Translates to: AFSREALTINDMGKAARQRDSGS*RQLPTH Trigger: ATGTGTGGGCAGCTGCCTGCAGCTACCAGAGTCCCT...TTGCCTGGCAGCTTTGCCCATGTCATTTATTGTCAGAGCTTCACGGGAAAATGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR CCA 90 bp | TCAAGAATTATAATTGTTCCCCCAGAGTTTCAAGCTTCCCCTATTCCCAGGCCTCCGAGGCCCCAGAAATaGCCACCCGATGGTCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: SRIIIVPPEFQASPIPRPPRPQK*PPDGQG Trigger: TCCCTGACCATCGGGTGGCCATTTCTGGGGCCTCGG...AGGCCTGGGAATAGGGGAAGCTTGAAACTCTGGGGGAACAATTATAATTCTTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR CCA 90 bp | TCAAGAATTATAATTGTTCCCCCAGAGTTTCAAGCTTCCCCTATTCCCAGGCCTAGCCCGGGCACTGTGTaGGGACAGCCTCTCAAACCT | + |
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Preference number: 4 (lower is better) Translates to: SRIIIVPPEFQASPIPRPSPGTV*GQPLKP Trigger: AGGTTTGAGAGGCTGTCCCCACACAGTGCCCGGGCT...AGGCCTGGGAATAGGGGAAGCTTGAAACTCTGGGGGAACAATTATAATTCTTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR GCA 90 bp | TCAAGAATTATAATTGTTCCCCCAGAGTTTCAAGCTTCCCCTATTCCCAGGCCTCATCAGGAACCTGCCTaGCACCTCTCGAAAATTCTG | + |
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Preference number: 4 (lower is better) Translates to: SRIIIVPPEFQASPIPRPHQEPA*HLSKIL Trigger: CAGAATTTTCGAGAGGTGGCAGGCAGGTTCCTGATG...AGGCCTGGGAATAGGGGAAGCTTGAAACTCTGGGGGAACAATTATAATTCTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS-3UTR CCA 90 bp | TCAAGAATTATAATTGTTCCCCCAGAGTTTCAAGCTTCCCCTATTCCCAGGCCTACACTAGCAGGTGAGTaGAGGTCTCTGACATCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SRIIIVPPEFQASPIPRPTLAGE*RSLTSG Trigger: TCCTGATGTCAGAGACCTCCACTCACCTGCTAGTGT...AGGCCTGGGAATAGGGGAAGCTTGAAACTCTGGGGGAACAATTATAATTCTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS TCA 90 bp | CAGTGCGATTGGAGCCATCCTCACGGACTCTCAGCCATTCAATGGTaGCCCGAGCCCGGGCACTGTGTGGGGACAGCCTCTCAAACCTCC | + |
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Preference number: 5 (lower is better) Translates to: QCDWSHPHGLSAIQW*PEPGHCVGTASQTS Trigger: GGAGGTTTGAGAGGCTGTCCCCACACAGTGCCCGGGCTCGGGTCACCATTGAATGGCTGAGAGTCCGTGAGGATGGCTCCAATCGCACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS GCA 72 bp | TGTGGCTCGCCCTGCCCCTTGCCGTCCGGCGTCCCCTaGGCCGCGAAACGGACCAACTTGTGTGCGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: CGSPCPLPSGVP*AAKRTNLCALQ Trigger: CTGGAGCGCACACAAGTTGGTCCGTTTCGCGGCGCAGGGGACGCCGGACGGCAAGGGGCAGGGCGAGCCACA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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| CDS CCA 72 bp | CAGCCATTCAATGGTGACCCGAGCCCGGGCACTGTGTaGGGACAGCCTCTCAAACCTCCGGAGAGCTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: QPFNGDPSPGTV*GQPLKPPESCS Trigger: AGAACAGCTCTCCGGAGGTTTGAGAGGCTGTCCCCACACAGTGCCCGGGCTCGGGTCACCATTGAATGGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085797.6 |
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