Pregenerated sensors for LEFTY1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038793Ensembl transcript IDs: ENSMUST00000037361.9
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGACTGGGACTCAGCCCAGATTCAGCGACAAATTAAGGGAACAATaGCAATTGGGGATTCTGTCCTTGGTTTGCAGTATCTATACATGT | + |
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Preference number: 1 (lower is better) Translates to: KTGTQPRFSDKLREQ*QLGILSLVCSIYTC Trigger: ACATGTATAGATACTGCAAACCAAGGACAGAATCCCCAATTGCCATTGTTCCCTTAATTTGTCGCTGAATCTGGGCTGAGTCCCAGTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| 3UTR-3UTR TCA 90 bp | AGCGCCTCCAGGGGCCAGCGAGTCACATTCCTCGAAGGTAAAAATTTAGGGATGCACTTCAGATTTGCATaGAAGGCACATCCTTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: SASRGQRVTFLEGKNLGMHFRFA*KAHPWG Trigger: TCCCCAAGGATGTGCCTTTCATGCAAATCTGAAGTG...CATCCCTAAATTTTTACCTTCGAGGAATGTGACTCGCTGGCCCCTGGAGGCGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| 3UTR-3UTR CCA 90 bp | GAACAATGGCAATTGGGGATTCTGTCCTTGGTTTGCAGTATCTATACATGTAAGAAGGACAGAGACCACTaGGTCAGAGCGCCTCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: EQWQLGILSLVCSIYTCKKDRDH*VRAPPG Trigger: CCCTGGAGGCGCTCTGACCCAGTGGTCTCTGTCCTT...CTTACATGTATAGATACTGCAAACCAAGGACAGAATCCCCAATTGCCATTGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| 3UTR CAA 90 bp | GGGACTCAGCCCAGATTCAGCGACAAATTAAGGGAACAATGGCAATaGGGGATTCTGTCCTTGGTTTGCAGTATCTATACATGTAAGTGC | + |
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Preference number: 2 (lower is better) Translates to: GTQPRFSDKLREQWQ*GILSLVCSIYTCKC Trigger: GCACTTACATGTATAGATACTGCAAACCAAGGACAGAATCCCCAATTGCCATTGTTCCCTTAATTTGTCGCTGAATCTGGGCTGAGTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| 3UTR-3UTR GCA 90 bp | ACTTGTGGCTTAGGTCCAGAGTCAAGACTGGGACTCAGCCCAGATTCAGCGACAATTCTGTCCTTGGTTTaGAGTATCTATACATGTAAG | + |
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Preference number: 2 (lower is better) Translates to: TCGLGPESRLGLSPDSATILSLV*SIYTCK Trigger: CTTACATGTATAGATACTGCAAACCAAGGACAGAAT...TGTCGCTGAATCTGGGCTGAGTCCCAGTCTTGACTCTGGACCTAAGCCACAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| 3UTR-3UTR GCA 90 bp | GGGAACAATGGCAATTGGGGATTCTGTCCTTGGTTTGCAGTATCTATACATGTAGTGCTTCGCATACAGTaGAGTGAACAATATGAAGGA | + |
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Preference number: 2 (lower is better) Translates to: GNNGNWGFCPWFAVSIHVVLRIQ*SEQYEG Trigger: TCCTTCATATTGTTCACTGCACTGTATGCGAAGCAC...TACATGTATAGATACTGCAAACCAAGGACAGAATCCCCAATTGCCATTGTTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| 3UTR-3UTR CAA 90 bp | CCAACTTGTGGCTTAGGTCCAGAGTCAAGACTGGGACTCAGCCCAGATTCAGCGATGAAAGGCACATCCTaGGGGAAGCCACACCCCGCG | + |
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Preference number: 3 (lower is better) Translates to: PTCGLGPESRLGLSPDSAMKGTS*GKPHPA Trigger: CGCGGGGTGTGGCTTCCCCAAGGATGTGCCTTTCAT...CGCTGAATCTGGGCTGAGTCCCAGTCTTGACTCTGGACCTAAGCCACAAGTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| 3UTR TCA 72 bp | CAGCTCTCCCAGTATAATGAGCACTTCAGATTTGCATaGAAGGCACATCCTTGGGGAAGCCACACCCCGCGC | + |
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Preference number: 3 (lower is better) Translates to: QLSQYNEHFRFA*KAHPWGSHTPR Trigger: GCGCGGGGTGTGGCTTCCCCAAGGATGTGCCTTTCATGCAAATCTGAAGTGCTCATTATACTGGGAGAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| 3UTR-3UTR CAA 90 bp | TGCCCAACTTGTGGCTTAGGTCCAGAGTCAAGACTGGGACTCAGCCCAGATTCAAGGGAACAATGGCAATaGGGGATTCTGTCCTTGGTT | + |
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Preference number: 3 (lower is better) Translates to: CPTCGLGPESRLGLSPDSREQWQ*GILSLV Trigger: AACCAAGGACAGAATCCCCAATTGCCATTGTTCCCT...TGAATCTGGGCTGAGTCCCAGTCTTGACTCTGGACCTAAGCCACAAGTTGGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| 3UTR GCA 72 bp | ATTCTGTCCTTGGTTTGCAGTATCTATACATGTAAGTaGTTCGCATACAGTGCAGTGAACAATATGAAGGAC | + |
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Preference number: 3 (lower is better) Translates to: ILSLVCSIYTCK*FAYSAVNNMKD Trigger: GTCCTTCATATTGTTCACTGCACTGTATGCGAAGCACTTACATGTATAGATACTGCAAACCAAGGACAGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR CCA 90 bp | GTGAACAATATGAAGGACAGAGACCACTGGGTCAGAGCGCCTCCAGGGGCCAGCAGCCCGGGCACTGTGTaGGGACAGCCTCTTTTGCCT | + |
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Preference number: 4 (lower is better) Translates to: VNNMKDRDHWVRAPPGASSPGTV*GQPLLP Trigger: AGGCAAAAGAGGCTGTCCCCACACAGTGCCCGGGCT...GCTGGCCCCTGGAGGCGCTCTGACCCAGTGGTCTCTGTCCTTCATATTGTTCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR TCA 90 bp | TGCCCAACTTGTGGCTTAGGTCCAGAGTCAAGACTGGGACTCAGCCCAGATTCAAGCAGGGCCACATACTaGGTCCTCACGTGCGAGGGG | + |
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Preference number: 4 (lower is better) Translates to: CPTCGLGPESRLGLSPDSSRATY*VLTCEG Trigger: CCCCTCGCACGTGAGGACTCAGTATGTGGCCCTGCT...TGAATCTGGGCTGAGTCCCAGTCTTGACTCTGGACCTAAGCCACAAGTTGGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR GCA 90 bp | TGCCCAACTTGTGGCTTAGGTCCAGAGTCAAGACTGGGACTCAGCCCAGATTCAGCTGTTGCAGCAGGCTaGCCAGGATCTGCTCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: CPTCGLGPESRLGLSPDSAVAAG*PGSALR Trigger: CCGGAGAGCAGATCCTGGGCAGCCTGCTGCAACAGC...TGAATCTGGGCTGAGTCCCAGTCTTGACTCTGGACCTAAGCCACAAGTTGGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR GCA 90 bp | AGCGCCTCCAGGGGCCAGCGAGTCACATTCCTCGAAGGTAAAAATTTAGGGATGGCTAACCAGCGACAGTaGCCAGAGTGCCCAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: SASRGQRVTFLEGKNLGMANQRQ*PECPAE Trigger: CTCTGCTGGGCACTCTGGGCACTGTCGCTGGTTAGC...CATCCCTAAATTTTTACCTTCGAGGAATGTGACTCGCTGGCCCCTGGAGGCGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR GCA 90 bp | CTTAGGTCCAGAGTCAAGACTGGGACTCAGCCCAGATTCAGCGACAAATTAAGGAGGGACTCCGGTAGCTaGAGGCAGCTGCCCACACAT | + |
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Preference number: 4 (lower is better) Translates to: LRSRVKTGTQPRFSDKLRRDSGS*RQLPTH Trigger: ATGTGTGGGCAGCTGCCTGCAGCTACCGGAGTCCCT...CCTTAATTTGTCGCTGAATCTGGGCTGAGTCCCAGTCTTGACTCTGGACCTAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR CCA 90 bp | ACTTGTGGCTTAGGTCCAGAGTCAAGACTGGGACTCAGCCCAGATTCAGCGACAACACTAGCAGGTGAGTaGAGGTCTCTGACACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: TCGLGPESRLGLSPDSATTLAGE*RSLTPG Trigger: TCCTGGTGTCAGAGACCTCCACTCACCTGCTAGTGT...TGTCGCTGAATCTGGGCTGAGTCCCAGTCTTGACTCTGGACCTAAGCCACAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR GCA 90 bp | CAGATTCAGCGACAAATTAAGGGAACAATGGCAATTGGGGATTCTGTCCTTGGTCGACAGTGCCCAGAGTaGCCAGCAGAGCCACAGGAA | + |
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Preference number: 4 (lower is better) Translates to: QIQRQIKGTMAIGDSVLGRQCPE*PAEPQE Trigger: TTCCTGTGGCTCTGCTGGGCACTCTGGGCACTGTCG...ACCAAGGACAGAATCCCCAATTGCCATTGTTCCCTTAATTTGTCGCTGAATCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR CCA 90 bp | TCCTTGGTTTGCAGTATCTATACATGTAAGTGCTTCGCATACAGTGCAGTGAACCCGAGGCCCCAGAAATaGCCACCTGCTGGTCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: SLVCSIYTCKCFAYSAVNPRPQK*PPAGQG Trigger: TCCCTGACCAGCAGGTGGCCATTTCTGGGGCCTCGG...GTTCACTGCACTGTATGCGAAGCACTTACATGTATAGATACTGCAAACCAAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| 3UTR CAA 72 bp | ATCCCCAGCTCTCCCAGTATAATGAGCACTTCAGATTaGCATGAAAGGCACATCCTTGGGGAAGCCACACCC | + |
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Preference number: 4 (lower is better) Translates to: IPSSPSIMSTSD*HERHILGEATP Trigger: GGGTGTGGCTTCCCCAAGGATGTGCCTTTCATGCAAATCTGAAGTGCTCATTATACTGGGAGAGCTGGGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR CCA 90 bp | TTCAGCGACAAATTAAGGGAACAATGGCAATTGGGGATTCTGTCCTTGGTTTGCGAAATGGCCACCTGCTaGTCAGGGACTCCGGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: FSDKLREQWQLGILSLVCEMATC*SGTPVA Trigger: AGCTACCGGAGTCCCTGACCAGCAGGTGGCCATTTC...GCAAACCAAGGACAGAATCCCCAATTGCCATTGTTCCCTTAATTTGTCGCTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR TCA 90 bp | CAAATTAAGGGAACAATGGCAATTGGGGATTCTGTCCTTGGTTTGCAGTATCTATCACGTGCGAGGGGATaGCCATCCCTTCCACATCAG | + |
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Preference number: 4 (lower is better) Translates to: QIKGTMAIGDSVLGLQYLSRARG*PSLPHQ Trigger: CTGATGTGGAAGGGATGGTCATCCCCTCGCACGTGA...TAGATACTGCAAACCAAGGACAGAATCCCCAATTGCCATTGTTCCCTTAATTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR TCA 90 bp | ATATTTTATTCACATCTAGCAAAGCCAGTATTGCCTAGGTTGGACATGTTTGCCGTGAGTGGAGGTCTCTaGCACCAGGAACCTGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: IFYSHLAKPVLPRLDMFAVSGGL*HQEPAC Trigger: GCAGGCAGGTTCCTGGTGTCAGAGACCTCCACTCAC...GGCAAACATGTCCAACCTAGGCAATACTGGCTTTGCTAGATGTGAATAAAATAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS-3UTR CCA 90 bp | TCCTTGGTTTGCAGTATCTATACATGTAAGTGCTTCGCATACAGTGCAGTGAACACCTCTCGAAGGTTCTaGCTGAACCTCTTGCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: SLVCSIYTCKCFAYSAVNTSRRF*LNLLPR Trigger: CCGAGGCAAGAGGTTCAGCCAGAACCTTCGAGAGGT...GTTCACTGCACTGTATGCGAAGCACTTACATGTATAGATACTGCAAACCAAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| 3UTR CAA 72 bp | CCCAGATTCAGCGACAAATTAAGGGAACAATGGCAATaGGGGATTCTGTCCTTGGTTTGCAGTATCTATACA | + |
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Preference number: 4 (lower is better) Translates to: PRFSDKLREQWQ*GILSLVCSIYT Trigger: TGTATAGATACTGCAAACCAAGGACAGAATCCCCAATTGCCATTGTTCCCTTAATTTGTCGCTGAATCTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS CCA 90 bp | GCGGAAGCGCAGCCATTCAATGGTGACCCGAGCCCGGGCACTGTGTaGGGACAGCCTCTTTTGCCTCCGGAGAGCTGTTCTGGGCACAGG | + |
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Preference number: 5 (lower is better) Translates to: AEAQPFNGDPSPGTV*GQPLLPPESCSGHR Trigger: CCTGTGCCCAGAACAGCTCTCCGGAGGCAAAAGAGGCTGTCCCCACACAGTGCCCGGGCTCGGGTCACCATTGAATGGCTGCGCTTCCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS TCA 90 bp | TCTCTGACACCAGGAACCTGCCTGCCACCTCTCGAAGGTTCTGGCTaGACCTCTTGCCTCGGGAGCGGCTGGCATGGCTGTGTTGTAGCA | + |
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Preference number: 5 (lower is better) Translates to: SLTPGTCLPPLEGSG*TSCLGSGWHGCVVA Trigger: TGCTACAACACAGCCATGCCAGCCGCTCCCGAGGCAAGAGGTTCAGCCAGAACCTTCGAGAGGTGGCAGGCAGGTTCCTGGTGTCAGAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS GCA 90 bp | GAAATGGCCACCTGCTGGTCAGGGACTCCGGTAGCTGCAGGCAGCTaGCCACACATTCATATGTCAGGAACCCTGGCGGTTCTAGGATCC | + |
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Preference number: 5 (lower is better) Translates to: EMATCWSGTPVAAGS*PHIHMSGTLAVLGS Trigger: GGATCCTAGAACCGCCAGGGTTCCTGACATATGAATGTGTGGGCAGCTGCCTGCAGCTACCGGAGTCCCTGACCAGCAGGTGGCCATTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS CAA 72 bp | GACCCGAGCCCGGGCACTGTGTGGGGACAGCCTCTTTaGCCTCCGGAGAGCTGTTCTGGGCACAGGCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: DPSPGTVWGQPL*PPESCSGHRLL Trigger: CAGGAGCCTGTGCCCAGAACAGCTCTCCGGAGGCAAAAGAGGCTGTCCCCACACAGTGCCCGGGCTCGGGTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS TCA 72 bp | CCAGGAACCTGCCTGCCACCTCTCGAAGGTTCTGGCTaGACCTCTTGCCTCGGGAGCGGCTGGCATGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: PGTCLPPLEGSG*TSCLGSGWHGC Trigger: ACAGCCATGCCAGCCGCTCCCGAGGCAAGAGGTTCAGCCAGAACCTTCGAGAGGTGGCAGGCAGGTTCCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS GCA 72 bp | ACCTGCTGGTCAGGGACTCCGGTAGCTGCAGGCAGCTaGCCACACATTCATATGTCAGGAACCCTGGCGGTT | + |
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Preference number: 6 (lower is better) Translates to: TCWSGTPVAAGS*PHIHMSGTLAV Trigger: AACCGCCAGGGTTCCTGACATATGAATGTGTGGGCAGCTGCCTGCAGCTACCGGAGTCCCTGACCAGCAGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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| CDS CAA 72 bp | GCCTTCAGTCACTGGTGCCTCGGGGTCACAATTGCCTaGAGCTCCATAGTCCTTGAGGTCCAGCGTGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: AFSHWCLGVTIA*SSIVLEVQRVQ Trigger: CTGCACACGCTGGACCTCAAGGACTATGGAGCTCAAGGCAATTGTGACCCCGAGGCACCAGTGACTGAAGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037361.9 |
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