Pregenerated sensors for LDOC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057615Ensembl transcript IDs: ENSMUST00000075983.6
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAATCGCTGGAACTCCGAACAGAGTTCAGATTAGGATAAGTGCCTaGGGCCAAAGTGAGTTTCAGAGCAAGGTCCAGGCCCAACTCACA | + |
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Preference number: 1 (lower is better) Translates to: KIAGTPNRVQIRISA*GQSEFQSKVQAQLT Trigger: TGTGAGTTGGGCCTGGACCTTGCTCTGAAACTCACTTTGGCCTCAGGCACTTATCCTAATCTGAACTCTGTTCGGAGTTCCAGCGATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR-3UTR CCA 90 bp | CTTCTGGGCAGATGGCGGACTGGCCTGAGTTCCAGTGGATGTCAGCAGCAGGAAAGCAGGAATGGCGGGTaGGGGGTTGGAATGAAAAGG | + |
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Preference number: 2 (lower is better) Translates to: LLGRWRTGLSSSGCQQQESRNGG*GVGMKR Trigger: CCTTTTCATTCCAACCCCCCACCCGCCATTCCTGCT...TTCCTGCTGCTGACATCCACTGGAACTCAGGCCAGTCCGCCATCTGCCCAGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR-3UTR TCA 90 bp | AGACAAGTCCTGAAGGGAATGATGGAGCAAACAGACTGGCGGGGAAGAGGATGGTGCAAAGGGAGAGATTaGGGCAGCAGGAATGGCGGG | + |
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Preference number: 2 (lower is better) Translates to: RQVLKGMMEQTDWRGRGWCKGRD*GSRNGG Trigger: CCCGCCATTCCTGCTGCCTCAATCTCTCCCTTTGCA...CCATCCTCTTCCCCGCCAGTCTGTTTGCTCCATCATTCCCTTCAGGACTTGTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR-3UTR TCA 90 bp | CAGGTTCCTGTTCTGGTCAGGCAGATGTGGAACCTGGTAGTACGTACAGAACTAGATGGCGGACTGGCCTaGGTTCCAGTGGATGTCAGC | + |
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Preference number: 2 (lower is better) Translates to: QVPVLVRQMWNLVVRTELDGGLA*VPVDVS Trigger: GCTGACATCCACTGGAACTCAGGCCAGTCCGCCATC...TAGTTCTGTACGTACTACCAGGTTCCACATCTGCCTGACCAGAACAGGAACCTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR-3UTR CCA 90 bp | ACTAACCAGTCGGTAAAGACTGGCTGGCCCCTTCAAGGTTTGGTGAGTAGTCCATGGCGGGGAAGAGGATaGCCATGCAAAGGGAGAGAT | + |
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Preference number: 2 (lower is better) Translates to: TNQSVKTGWPLQGLVSSPWRGRG*PCKGRD Trigger: ATCTCTCCCTTTGCATGGCCATCCTCTTCCCCGCCA...TGGACTACTCACCAAACCTTGAAGGGGCCAGCCAGTCTTTACCGACTGGTTAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR-3UTR CCA 90 bp | AGCAGCAGGAATGCAGGTGGTCTGACCAGTTCTAATAGGGACCTGGAAAATCGCATGGAGCAAACAGACTaGCGGGGAAGAGGATGGCCA | + |
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Preference number: 2 (lower is better) Translates to: SSRNAGGLTSSNRDLENRMEQTD*RGRGWP Trigger: TGGCCATCCTCTTCCCCGCCAGTCTGTTTGCTCCAT...GCGATTTTCCAGGTCCCTATTAGAACTGGTCAGACCACCTGCATTCCTGCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR-3UTR GCA 90 bp | ACTAACCAGTCGGTAAAGACTGGCTGGCCCCTTCAAGGTTTGGTGAGTAGTCCAGAAATGTCAGGAATCTaGTTCTGGGCAGATGGCGGA | + |
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Preference number: 2 (lower is better) Translates to: TNQSVKTGWPLQGLVSSPEMSGI*FWADGG Trigger: TCCGCCATCTGCCCAGAAGCAGATTCCTGACATTTC...TGGACTACTCACCAAACCTTGAAGGGGCCAGCCAGTCTTTACCGACTGGTTAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR-3UTR CCA 90 bp | CAGGTTCCTGTTCTGGTCAGGCAGATGTGGAACCTGGTAGTACGTACAGAACTATGGCCTGAGTTCCAGTaGATGTCAGCAGCAGGAATG | + |
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Preference number: 2 (lower is better) Translates to: QVPVLVRQMWNLVVRTELWPEFQ*MSAAGM Trigger: CATTCCTGCTGCTGACATCCACTGGAACTCAGGCCA...TAGTTCTGTACGTACTACCAGGTTCCACATCTGCCTGACCAGAACAGGAACCTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR-3UTR TCA 90 bp | CAGAGTCTGAATGGGTGGAGTAGCAACTCCATCATCTTCTTGGTCCTTATCTTGATTAGGATAAGTGCCTaGGGCCAAAGTGAGTTTCAG | + |
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Preference number: 2 (lower is better) Translates to: QSLNGWSSNSIIFLVLILIRISA*GQSEFQ Trigger: CTGAAACTCACTTTGGCCTCAGGCACTTATCCTAAT...CAAGATAAGGACCAAGAAGATGATGGAGTTGCTACTCCACCCATTCAGACTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR TCA 72 bp | TCAGGAATCTGCTTCTGGGCAGATGGCGGACTGGCCTaGGTTCCAGTGGATGTCAGCAGCAGGAATGCAGGT | + |
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Preference number: 3 (lower is better) Translates to: SGICFWADGGLA*VPVDVSSRNAG Trigger: ACCTGCATTCCTGCTGCTGACATCCACTGGAACTCAGGCCAGTCCGCCATCTGCCCAGAAGCAGATTCCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR-3UTR CAA 90 bp | AGACAAGTCCTGAAGGGAATGATGGAGCAAACAGACTGGCGGGGAAGAGGATGGATGCAAAGGGAGAGATaGAGGCAGCAGGAATGGCGG | + |
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Preference number: 3 (lower is better) Translates to: RQVLKGMMEQTDWRGRGWMQRER*RQQEWR Trigger: CCGCCATTCCTGCTGCCTCAATCTCTCCCTTTGCAT...CCATCCTCTTCCCCGCCAGTCTGTTTGCTCCATCATTCCCTTCAGGACTTGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR CCA 72 bp | AAATGTCAGGAATCTGCTTCTGGGCAGATGGCGGACTaGCCTGAGTTCCAGTGGATGTCAGCAGCAGGAATG | + |
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Preference number: 3 (lower is better) Translates to: KCQESASGQMAD*PEFQWMSAAGM Trigger: CATTCCTGCTGCTGACATCCACTGGAACTCAGGCCAGTCCGCCATCTGCCCAGAAGCAGATTCCTGACATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR CCA 72 bp | CAGGCACATCAGGTTCCTGTTCTGGTCAGGCAGATGTaGAACCTGGTAGTACGTACAGAACTAACCAGTCGG | + |
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Preference number: 3 (lower is better) Translates to: QAHQVPVLVRQM*NLVVRTELTSR Trigger: CCGACTGGTTAGTTCTGTACGTACTACCAGGTTCCACATCTGCCTGACCAGAACAGGAACCTGATGTGCCTG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR TCA 72 bp | GGAACTCCGAACAGAGTTCAGATTAGGATAAGTGCCTaGGGCCAAAGTGAGTTTCAGAGCAAGGTCCAGGCC | + |
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Preference number: 3 (lower is better) Translates to: GTPNRVQIRISA*GQSEFQSKVQA Trigger: GGCCTGGACCTTGCTCTGAAACTCACTTTGGCCTCAGGCACTTATCCTAATCTGAACTCTGTTCGGAGTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR TCA 72 bp | TTCCAGTGGATGTCAGCAGCAGGAATGCAGGTGGTCTaGCCAGTTCTAATAGGGACCTGGAAAATCGCTGGA | + |
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Preference number: 3 (lower is better) Translates to: FQWMSAAGMQVV*PVLIGTWKIAG Trigger: TCCAGCGATTTTCCAGGTCCCTATTAGAACTGGTCAGACCACCTGCATTCCTGCTGCTGACATCCACTGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR CCA 72 bp | GGTTTGGTGAGTAGTCCAAAACAGAGTCTGAATGGGTaGAGTAGCAACTCCATCATCTTCTTGGTCCTTATC | + |
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Preference number: 3 (lower is better) Translates to: GLVSSPKQSLNG*SSNSIIFLVLI Trigger: GATAAGGACCAAGAAGATGATGGAGTTGCTACTCCACCCATTCAGACTCTGTTTTGGACTACTCACCAAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR-3UTR CAA 90 bp | AACCAGTCGGTAAAGACTGGCTGGCCCCTTCAAGGTTTGGTGAGTAGTCCAAAATTCTTGGTCCTTATCTaGAAAAGTGCTTCAGATGAA | + |
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Preference number: 3 (lower is better) Translates to: NQSVKTGWPLQGLVSSPKFLVLI*KSASDE Trigger: TTCATCTGAAGCACTTTTCAAGATAAGGACCAAGAA...TTTTGGACTACTCACCAAACCTTGAAGGGGCCAGCCAGTCTTTACCGACTGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR TCA 72 bp | GTCCTTATCTTGAAAAGTGCTTCAGATGAAATTCGGTaGGTGGAGGTGAAATGTCAGGAATCTGCTTCTGGG | + |
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Preference number: 3 (lower is better) Translates to: VLILKSASDEIR*VEVKCQESASG Trigger: CCCAGAAGCAGATTCCTGACATTTCACCTCCACTCACCGAATTTCATCTGAAGCACTTTTCAAGATAAGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR TCA 72 bp | CATCTTCTTGGTCCTTATCTTGAAAAGTGCTTCAGATaGAATTCGGTGAGTGGAGGTGAAATGTCAGGAATC | + |
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Preference number: 3 (lower is better) Translates to: HLLGPYLEKCFR*NSVSGGEMSGI Trigger: GATTCCTGACATTTCACCTCCACTCACCGAATTTCATCTGAAGCACTTTTCAAGATAAGGACCAAGAAGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS-3UTR CCA 90 bp | AGCAGCAGGAATGCAGGTGGTCTGACCAGTTCTAATAGGGACCTGGAAAATCGCCCTGGCGCAGCAGCCTaGCCCGCTCACACACCAACA | + |
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Preference number: 4 (lower is better) Translates to: SSRNAGGLTSSNRDLENRPGAAA*PAHTPT Trigger: TGTTGGTGTGTGAGCGGGCCAGGCTGCTGCGCCAGG...GCGATTTTCCAGGTCCCTATTAGAACTGGTCAGACCACCTGCATTCCTGCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS-3UTR CCA 90 bp | AACCAGTCGGTAAAGACTGGCTGGCCCCTTCAAGGTTTGGTGAGTAGTCCAAAACACCGGACAGCTCGGTaGACATACCTGGCGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: NQSVKTGWPLQGLVSSPKHRTAR*TYLAQQ Trigger: CTGCTGCGCCAGGTATGTCCACCGAGCTGTCCGGTG...TTTTGGACTACTCACCAAACCTTGAAGGGGCCAGCCAGTCTTTACCGACTGGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS-3UTR CCA 90 bp | AGCAGCAGGAATGCAGGTGGTCTGACCAGTTCTAATAGGGACCTGGAAAATCGCTGCTTCAGGAGCTGGTaGTTCTCCATGCACAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: SSRNAGGLTSSNRDLENRCFRSW*FSMHRA Trigger: AGCCCTGTGCATGGAGAACCACCAGCTCCTGAAGCA...GCGATTTTCCAGGTCCCTATTAGAACTGGTCAGACCACCTGCATTCCTGCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS-3UTR GCA 90 bp | CAGGTTCCTGTTCTGGTCAGGCAGATGTGGAACCTGGTAGTACGTACAGAACTAACCAACAGTCGCAGCTaGTTCAGGAGCTGGTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: QVPVLVRQMWNLVVRTELTNSRS*FRSWWF Trigger: GAACCACCAGCTCCTGAAGCAGCTGCGACTGTTGGT...TAGTTCTGTACGTACTACCAGGTTCCACATCTGCCTGACCAGAACAGGAACCTG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS-3UTR GCA 90 bp | AGCAGCAGGAATGCAGGTGGTCTGACCAGTTCTAATAGGGACCTGGAAAATCGCCTTTCATGGCATCATTaGAGAAGTGCTCCTCATTCG | + |
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Preference number: 4 (lower is better) Translates to: SSRNAGGLTSSNRDLENRLSWHH*RSAPHS Trigger: CGAATGAGGAGCACTTCTGCAATGATGCCATGAAAG...GCGATTTTCCAGGTCCCTATTAGAACTGGTCAGACCACCTGCATTCCTGCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS-3UTR CCA 90 bp | GGGTGGAGTAGCAACTCCATCATCTTCTTGGTCCTTATCTTGAAAAGTGCTTCAAGCTGCTTCAGGAGCTaGTGGTTCTCCATGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: GWSSNSIIFLVLILKSASSCFRS*WFSMHR Trigger: CCTGTGCATGGAGAACCACCAGCTCCTGAAGCAGCT...TGAAGCACTTTTCAAGATAAGGACCAAGAAGATGATGGAGTTGCTACTCCACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS-3UTR GCA 90 bp | GAACAAAGACAAGTCCTGAAGGGAATGATGGAGCAAACAGACTGGCGGGGAAGAGAGGCTGATCAAGAATaGCACTTTCATGGCATCATT | + |
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Preference number: 4 (lower is better) Translates to: EQRQVLKGMMEQTDWRGREADQE*HFHGII Trigger: AATGATGCCATGAAAGTGGCATTCTTGATCAGCCTC...TCTTCCCCGCCAGTCTGTTTGCTCCATCATTCCCTTCAGGACTTGTCTTTGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| 3UTR CAA 72 bp | AGTCTGAATGGGTGGAGTAGCAACTCCATCATCTTCTaGGTCCTTATCTTGAAAAGTGCTTCAGATGAAATT | + |
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Preference number: 4 (lower is better) Translates to: SLNGWSSNSIIF*VLILKSASDEI Trigger: AATTTCATCTGAAGCACTTTTCAAGATAAGGACCAAGAAGATGATGGAGTTGCTACTCCACCCATTCAGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS CCA 90 bp | GGTAGGGCACCGGACAGCTCGGTGGACATACCTGGCGCAGCAGCCTaGCCCGCTCACACACCAACAGTCGCAGCTGCTTCAGGAGCTGGT | + |
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Preference number: 5 (lower is better) Translates to: GRAPDSSVDIPGAAA*PAHTPTVAAASGAG Trigger: ACCAGCTCCTGAAGCAGCTGCGACTGTTGGTGTGTGAGCGGGCCAGGCTGCTGCGCCAGGTATGTCCACCGAGCTGTCCGGTGCCCTACC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS GCA 90 bp | ACCTGGCGCAGCAGCCTGGCCCGCTCACACACCAACAGTCGCAGCTaGTTCAGGAGCTGGTGGTTCTCCATGCACAGGGCTTGGTGCCTA | + |
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Preference number: 5 (lower is better) Translates to: TWRSSLARSHTNSRS*FRSWWFSMHRAWCL Trigger: TAGGCACCAAGCCCTGTGCATGGAGAACCACCAGCTCCTGAAGCAGCTGCGACTGTTGGTGTGTGAGCGGGCCAGGCTGCTGCGCCAGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS TCA 90 bp | CTGCATGATAAACTCAGGGAGCCGACCACTCTCGCCGCTAAACCGTaGGGGGTAGGGCACCGGACAGCTCGGTGGACATACCTGGCGCAG | + |
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Preference number: 5 (lower is better) Translates to: LHDKLREPTTLAAKP*GVGHRTARWTYLAQ Trigger: CTGCGCCAGGTATGTCCACCGAGCTGTCCGGTGCCCTACCCCTCACGGTTTAGCGGCGAGAGTGGTCGGCTCCCTGAGTTTATCATGCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS CCA 90 bp | AGCCTGGCCCGCTCACACACCAACAGTCGCAGCTGCTTCAGGAGCTaGTGGTTCTCCATGCACAGGGCTTGGTGCCTATCCAGAAGCGCG | + |
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Preference number: 5 (lower is better) Translates to: SLARSHTNSRSCFRS*WFSMHRAWCLSRSA Trigger: CGCGCTTCTGGATAGGCACCAAGCCCTGTGCATGGAGAACCACCAGCTCCTGAAGCAGCTGCGACTGTTGGTGTGTGAGCGGGCCAGGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS GCA 90 bp | CGCAGCTGCTTCAGGAGCTGGTGGTTCTCCATGCACAGGGCTTGGTaGCTATCCAGAAGCGCGTGCAGAAGCGACAGCAGCTCTTCCACC | + |
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Preference number: 5 (lower is better) Translates to: RSCFRSWWFSMHRAW*LSRSACRSDSSSST Trigger: GGTGGAAGAGCTGCTGTCGCTTCTGCACGCGCTTCTGGATAGGCACCAAGCCCTGTGCATGGAGAACCACCAGCTCCTGAAGCAGCTGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS GCA 90 bp | CATCACCCACTCCTCAGCTTCCCCGGAGAGGAGGCTGATCAAGAATaGCACTTTCATGGCATCATTGCAGAAGTGCTCCTCATTCGCAAG | + |
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Preference number: 5 (lower is better) Translates to: HHPLLSFPGEEADQE*HFHGIIAEVLLIRK Trigger: CTTGCGAATGAGGAGCACTTCTGCAATGATGCCATGAAAGTGGCATTCTTGATCAGCCTCCTCTCCGGGGAAGCTGAGGAGTGGGTGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS TCA 90 bp | CATCTCATCAACAAAGGCCTGATAATCACCGAGGACGTAGCTATTTaGCTCGATGTAAGGCATCACCCACTCCTCAGCTTCCCCGGAGAG | + |
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Preference number: 5 (lower is better) Translates to: HLINKGLIITEDVAI*LDVRHHPLLSFPGE Trigger: CTCTCCGGGGAAGCTGAGGAGTGGGTGATGCCTTACATCGAGTCAAATAGCTACGTCCTCGGTGATTATCAGGCCTTTGTTGATGAGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS-3UTR CAA 90 bp | CAAAGACAAGTCCTGAAGGGAATGATGGAGCAAACAGACTGGCGGGGAAGAGGAACTTTCATGGCATCATaGCAGAAGTGCTCCTCATTC | + |
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Preference number: 5 (lower is better) Translates to: QRQVLKGMMEQTDWRGRGTFMAS*QKCSSF Trigger: GAATGAGGAGCACTTCTGCAATGATGCCATGAAAGT...TCCTCTTCCCCGCCAGTCTGTTTGCTCCATCATTCCCTTCAGGACTTGTCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS CCA 72 bp | CCGGACAGCTCGGTGGACATACCTGGCGCAGCAGCCTaGCCCGCTCACACACCAACAGTCGCAGCTGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: PDSSVDIPGAAA*PAHTPTVAAAS Trigger: TGAAGCAGCTGCGACTGTTGGTGTGTGAGCGGGCCAGGCTGCTGCGCCAGGTATGTCCACCGAGCTGTCCGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS GCA 72 bp | AGCAGCCTGGCCCGCTCACACACCAACAGTCGCAGCTaGTTCAGGAGCTGGTGGTTCTCCATGCACAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: SSLARSHTNSRS*FRSWWFSMHRA Trigger: AGCCCTGTGCATGGAGAACCACCAGCTCCTGAAGCAGCTGCGACTGTTGGTGTGTGAGCGGGCCAGGCTGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS CAA 90 bp | CAGTCGCAGCTGCTTCAGGAGCTGGTGGTTCTCCATGCACAGGGCTaGGTGCCTATCCAGAAGCGCGTGCAGAAGCGACAGCAGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: QSQLLQELVVLHAQG*VPIQKRVQKRQQLF Trigger: GAAGAGCTGCTGTCGCTTCTGCACGCGCTTCTGGATAGGCACCAAGCCCTGTGCATGGAGAACCACCAGCTCCTGAAGCAGCTGCGACTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS CCA 72 bp | CGCTCACACACCAACAGTCGCAGCTGCTTCAGGAGCTaGTGGTTCTCCATGCACAGGGCTTGGTGCCTATCC | + |
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Preference number: 6 (lower is better) Translates to: RSHTNSRSCFRS*WFSMHRAWCLS Trigger: GGATAGGCACCAAGCCCTGTGCATGGAGAACCACCAGCTCCTGAAGCAGCTGCGACTGTTGGTGTGTGAGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS CAA 72 bp | CTGCTTCAGGAGCTGGTGGTTCTCCATGCACAGGGCTaGGTGCCTATCCAGAAGCGCGTGCAGAAGCGACAG | + |
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Preference number: 6 (lower is better) Translates to: LLQELVVLHAQG*VPIQKRVQKRQ Trigger: CTGTCGCTTCTGCACGCGCTTCTGGATAGGCACCAAGCCCTGTGCATGGAGAACCACCAGCTCCTGAAGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS GCA 72 bp | CTCCTCAGCTTCCCCGGAGAGGAGGCTGATCAAGAATaGCACTTTCATGGCATCATTGCAGAAGTGCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: LLSFPGEEADQE*HFHGIIAEVLL Trigger: GAGGAGCACTTCTGCAATGATGCCATGAAAGTGGCATTCTTGATCAGCCTCCTCTCCGGGGAAGCTGAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS CAA 90 bp | TCATCTCATCAACAAAGGCCTGATAATCACCGAGGACGTAGCTATTaGACTCGATGTAAGGCATCACCCACTCCTCAGCTTCCCCGGAGA | + |
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Preference number: 6 (lower is better) Translates to: SSHQQRPDNHRGRSY*TRCKASPTPQLPRR Trigger: TCTCCGGGGAAGCTGAGGAGTGGGTGATGCCTTACATCGAGTCAAATAGCTACGTCCTCGGTGATTATCAGGCCTTTGTTGATGAGATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS TCA 72 bp | AACAAAGGCCTGATAATCACCGAGGACGTAGCTATTTaGCTCGATGTAAGGCATCACCCACTCCTCAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: NKGLIITEDVAI*LDVRHHPLLSF Trigger: GAAGCTGAGGAGTGGGTGATGCCTTACATCGAGTCAAATAGCTACGTCCTCGGTGATTATCAGGCCTTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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| CDS CAA 72 bp | CAACAAAGGCCTGATAATCACCGAGGACGTAGCTATTaGACTCGATGTAAGGCATCACCCACTCCTCAGCTT | + |
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Preference number: 6 (lower is better) Translates to: QQRPDNHRGRSY*TRCKASPTPQL Trigger: AAGCTGAGGAGTGGGTGATGCCTTACATCGAGTCAAATAGCTACGTCCTCGGTGATTATCAGGCCTTTGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075983.6 |
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