RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LDLRAP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037295

Ensembl transcript IDs: ENSMUST00000037828.8

Found 219 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTGGCCACTTaGGCTAAGGAGCAGGGGCCTTGGAGCTGGCCAGGGAAAGGGAGC +
Preference number: 1 (lower is better)
Translates to: HPTPHSPPRARTLAT*AKEQGPWSWPGKGS
Trigger: GCTCCCTTTCCCTGGCCAGCTCCAAGGCCCCTGCTCCTTAGCCCAAGTGGCCAGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp TACAGCATCACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTaGCCACTTGGGCTAAGGAGCAGGGGCCTTGGAGCTGGCCAGGGA +
Preference number: 1 (lower is better)
Translates to: YSITQHHTVPLAPVP*PLGLRSRGLGAGQG
Trigger: TCCCTGGCCAGCTCCAAGGCCCCTGCTCCTTAGCCCAAGTGGCCAGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTGATGCTGTA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp CTCTGGGAGTCATGGGCAGCTGGTACACTAGGTCCTAGCACTGTATaGGCCACGTCAGGGACTGGGGCCCCCTTGTGGAGGGAGGGCAGG +
Preference number: 1 (lower is better)
Translates to: LWESWAAGTLGPSTV*ATSGTGAPLWREGR
Trigger: CCTGCCCTCCCTCCACAAGGGGGCCCCAGTCCCTGACGTGGCCCATACAGTGCTAGGACCTAGTGTACCAGCTGCCCATGACTCCCAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp GCTGGCAGGGAAAAGGAAAAGACAGGGCCTGGTGCAATGGGCACATaGCCCTGCAGAGTCCCATGGTGGGCATGTCCAGGGCAGCAGCCC +
Preference number: 1 (lower is better)
Translates to: AGREKEKTGPGAMGT*PCRVPWWACPGQQP
Trigger: GGGCTGCTGCCCTGGACATGCCCACCATGGGACTCTGCAGGGCCATGTGCCCATTGCACCAGGCCCTGTCTTTTCCTTTTCCCTGCCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp CTGGAGAGTCATGGGAACAGCACCATCCCTGGGAAGGGGTACACATaGGCACACTCTCACACTCGTGTCTCAGGAGCCCAGAGCCCGACC +
Preference number: 1 (lower is better)
Translates to: LESHGNSTIPGKGYT*AHSHTRVSGAQSPT
Trigger: GGTCGGGCTCTGGGCTCCTGAGACACGAGTGTGAGAGTGTGCCCATGTGTACCCCTTCCCAGGGATGGTGCTGTTCCCATGACTCTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 90 bp GAGGAGGATTGGCCGGGGAGTCCCCAGATAGAAGCCCGTGGAACTTaGGGAATGTGGCCTTGCTGGGATGGTCACTGTGAGTCTGGCCAG +
Preference number: 1 (lower is better)
Translates to: EEDWPGSPQIEARGT*GMWPCWDGHCESGQ
Trigger: CTGGCCAGACTCACAGTGACCATCCCAGCAAGGCCACATTCCTCAAGTTCCACGGGCTTCTATCTGGGGACTCCCCGGCCAATCCTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 90 bp CACAGACAGGGCCAAGCTGGTGATCAGCAGAAATGCGCTGATGGTTaGCTAGCAGCATGGCCTCGTGTCCCAGCCCACTTCTGTCTGGGC +
Preference number: 1 (lower is better)
Translates to: HRQGQAGDQQKCADG*LAAWPRVPAHFCLG
Trigger: GCCCAGACAGAAGTGGGCTGGGACACGAGGCCATGCTGCTAGGCAACCATCAGCGCATTTCTGCTGATCACCAGCTTGGCCCTGTCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp ATCCTCAAGCTGGCAGGGAAAAGGAAAAGACAGGGCCTGGTGCAATaGGCACATGGCCCTGCAGAGTCCCATGGTGGGCATGTCCAGGGC +
Preference number: 1 (lower is better)
Translates to: ILKLAGKRKRQGLVQ*AHGPAESHGGHVQG
Trigger: GCCCTGGACATGCCCACCATGGGACTCTGCAGGGCCATGTGCCCATTGCACCAGGCCCTGTCTTTTCCTTTTCCCTGCCAGCTTGAGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp AAACACATCTGCCCAGAAGTCAGCGGCATAGCAGCTAGCAGGGCATaGCGGCCTGCGCCAGCGCTGTGTGAAAAGGCACCAGATGGTTTG +
Preference number: 1 (lower is better)
Translates to: KHICPEVSGIAASRA*RPAPALCEKAPDGL
Trigger: CAAACCATCTGGTGCCTTTTCACACAGCGCTGGCGCAGGCCGCCATGCCCTGCTAGCTGCTATGCCGCTGACTTCTGGGCAGATGTGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp CAAGCTGGTGATCAGCAGAAATGCGCTGATGGTTGCCTAGCAGCATaGCCTCGTGTCCCAGCCCACTTCTGTCTGGGCCGGAAGCTCCAA +
Preference number: 1 (lower is better)
Translates to: QAGDQQKCADGCLAA*PRVPAHFCLGRKLQ
Trigger: TTGGAGCTTCCGGCCCAGACAGAAGTGGGCTGGGACACGAGGCCATGCTGCTAGGCAACCATCAGCGCATTTCTGCTGATCACCAGCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp CAGTCATTACCATACGGAGTCAGGAAGTGCCTGGGCACCTGGTCATaGAGTGGCTCACACAGGGCCCCCAAAAGCAGAGCTACCGAGCCA +
Preference number: 1 (lower is better)
Translates to: QSLPYGVRKCLGTWS*SGSHRAPKSRATEP
Trigger: TGGCTCGGTAGCTCTGCTTTTGGGGGCCCTGTGTGAGCCACTCCATGACCAGGTGCCCAGGCACTTCCTGACTCCGTATGGTAATGACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 90 bp TGTGGAACCAGGGCCTTGATGACCTGCAAATTCCTGTGCTGCCTGTaGCCTGCGGCTCCTGACCTCTTCAGAAGGCTCCCAGAAGCCTTC +
Preference number: 1 (lower is better)
Translates to: CGTRALMTCKFLCCL*PAAPDLFRRLPEAF
Trigger: GAAGGCTTCTGGGAGCCTTCTGAAGAGGTCAGGAGCCGCAGGTCACAGGCAGCACAGGAATTTGCAGGTCATCAAGGCCCTGGTTCCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 90 bp AAACCATCCTCAAGCTGGCAGGGAAAAGGAAAAGACAGGGCCTGGTaGAATGGGCACATGGCCCTGCAGAGTCCCATGGTGGGCATGTCC +
Preference number: 1 (lower is better)
Translates to: KPSSSWQGKGKDRAW*NGHMALQSPMVGMS
Trigger: GGACATGCCCACCATGGGACTCTGCAGGGCCATGTGCCCATTGCACCAGGCCCTGTCTTTTCCTTTTCCCTGCCAGCTTGAGGATGGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp TGGTTCCTGGGAGGACAACAAAGCCACAGAGAAAGAGGCGTGGGCTaGGAGGTGGCAGCACAGACGGCAGCTTTGGTATCAGATCTGGGT +
Preference number: 1 (lower is better)
Translates to: WFLGGQQSHRERGVG*EVAAQTAALVSDLG
Trigger: ACCCAGATCTGATACCAAAGCTGCCGTCTGTGCTGCCACCTCCCAGCCCACGCCTCTTTCTCTGTGGCTTTGTTGTCCTCCCAGGAACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp TGGGAGGACAACAAAGCCACAGAGAAAGAGGCGTGGGCTGGGAGGTaGCAGCACAGACGGCAGCTTTGGTATCAGATCTGGGTTCTGTTC +
Preference number: 1 (lower is better)
Translates to: WEDNKATEKEAWAGR*QHRRQLWYQIWVLF
Trigger: GAACAGAACCCAGATCTGATACCAAAGCTGCCGTCTGTGCTGCCACCTCCCAGCCCACGCCTCTTTCTCTGTGGCTTTGTTGTCCTCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 90 bp AGCCCGTGGAACTTGAGGAATGTGGCCTTGCTGGGATGGTCACTGTaGGTCTGGCCAGGACAGGAGCAGCTGGATCATAGCAATCTCTTG +
Preference number: 1 (lower is better)
Translates to: SPWNLRNVALLGWSL*VWPGQEQLDHSNLL
Trigger: CAAGAGATTGCTATGATCCAGCTGCTCCTGTCCTGGCCAGACTCACAGTGACCATCCCAGCAAGGCCACATTCCTCAAGTTCCACGGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 90 bp CAGGAGCCCAGAGCCCGACCAGAACACACTGTTAGAAACAGAGAGTaGTTACGCACAGGCCCACTGGTGTGGTCTTACATCACCCAACAG +
Preference number: 1 (lower is better)
Translates to: QEPRARPEHTVRNRE*LRTGPLVWSYITQQ
Trigger: CTGTTGGGTGATGTAAGACCACACCAGTGGGCCTGTGCGTAAGCACTCTCTGTTTCTAACAGTGTGTTCTGGTCGGGCTCTGGGCTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 90 bp ATTAGACACCAGAGGTTCGCCAAAGCAGCTCAGGAGTTGCAGGGCTaGCCTCTGGGAGTAAGGAAGACCCAGCACACTACAACTTGTGCC +
Preference number: 1 (lower is better)
Translates to: IRHQRFAKAAQELQG*PLGVRKTQHTTTCA
Trigger: GGCACAAGTTGTAGTGTGCTGGGTCTTCCTTACTCCCAGAGGGCAGCCCTGCAACTCCTGAGCTGCTTTGGCGAACCTCTGGTGTCTAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp ACACGTAATGCCACGCTGGCTTCTGAACACTCATGTCTGTACCCATaGACCAGCGCTCTTCTTACCCTTGGCCAGCATGGCTTCTCTCCA +
Preference number: 1 (lower is better)
Translates to: TRNATLASEHSCLYP*TSALLTLGQHGFSP
Trigger: TGGAGAGAAGCCATGCTGGCCAAGGGTAAGAAGAGCGCTGGTCCATGGGTACAGACATGAGTGTTCAGAAGCCAGCGTGGCATTACGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp CCTCTGGGAGTAAGGAAGACCCAGCACACTACAACTTGTGCCTGCTaGGAAGTGTGGAACCAGGGCCTTGATGACCTGCAAATTCCTGTG +
Preference number: 1 (lower is better)
Translates to: PLGVRKTQHTTTCAC*EVWNQGLDDLQIPV
Trigger: CACAGGAATTTGCAGGTCATCAAGGCCCTGGTTCCACACTTCCCAGCAGGCACAAGTTGTAGTGTGCTGGGTCTTCCTTACTCCCAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 90 bp TTAAAGTGCAGAGTTAAATGTGTCTTTGGTCAGGGGCTGCCTCTCTaGGAGCCTCAGTTACTCGGCCCCGAGGAAGCAGAGCTTGAGGAG +
Preference number: 1 (lower is better)
Translates to: LKCRVKCVFGQGLPL*EPQLLGPEEAELEE
Trigger: CTCCTCAAGCTCTGCTTCCTCGGGGCCGAGTAACTGAGGCTCTCAGAGAGGCAGCCCCTGACCAAAGACACATTTAACTCTGCACTTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 90 bp GAAAGCCACGTCCCATCCAGTACACAAAGAACGGCAGGCTCTTACTaGTTCAGGAGTGAGGATGCCCAGAGAAAAGGAACATCAACGGCT +
Preference number: 1 (lower is better)
Translates to: ESHVPSSTQRTAGSY*FRSEDAQRKGTSTA
Trigger: AGCCGTTGATGTTCCTTTTCTCTGGGCATCCTCACTCCTGAAGCAGTAAGAGCCTGCCGTTCTTTGTGTACTGGATGGGACGTGGCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 90 bp CAGAACACACTGTTAGAAACAGAGAGTGCTTACGCACAGGCCCACTaGTGTGGTCTTACATCACCCAACAGTGACCTCGTCACACTATCG +
Preference number: 1 (lower is better)
Translates to: QNTLLETESAYAQAH*CGLTSPNSDLVTLS
Trigger: CGATAGTGTGACGAGGTCACTGTTGGGTGATGTAAGACCACACCAGTGGGCCTGTGCGTAAGCACTCTCTGTTTCTAACAGTGTGTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 90 bp CCCATCCAGTACACAAAGAACGGCAGGCTCTTACTGCTTCAGGAGTaGGGATGCCCAGAGAAAAGGAACATCAACGGCTTTGGTCATTGT +
Preference number: 1 (lower is better)
Translates to: PIQYTKNGRLLLLQE*GCPEKRNINGFGHC
Trigger: ACAATGACCAAAGCCGTTGATGTTCCTTTTCTCTGGGCATCCTCACTCCTGAAGCAGTAAGAGCCTGCCGTTCTTTGTGTACTGGATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 90 bp CTCAGAAGCCGCCACCCTGCCCTTTGTTACCAGCAATACTCCAAGTaGTGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTGCTCAG +
Preference number: 1 (lower is better)
Translates to: LRSRHPALCYQQYSK*CSHSEREHLLFPAQ
Trigger: CTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCATCACTTGGAGTATTGCTGGTAACAAAGGGCAGGGTGGCGGCTTCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 90 bp GCAGATATGACTTGGCAGCCATTAGGTCAACTCAAACTCACTATGTaGCACTGCAAATGTTCCCTTCCAGTCCTCTTGCACTGGCACCCA +
Preference number: 1 (lower is better)
Translates to: ADMTWQPLGQLKLTM*HCKCSLPVLLHWHP
Trigger: TGGGTGCCAGTGCAAGAGGACTGGAAGGGAACATTTGCAGTGTCACATAGTGAGTTTGAGTTGACCTAATGGCTGCCAAGTCATATCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 90 bp CTCCAAGTGATGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTaGTCAGAACTGCCTTTCCAGCTTCACACAGCAGCATTGGCAGCA +
Preference number: 1 (lower is better)
Translates to: LQVMLTLRKGTFIVS*SELPFQLHTAALAA
Trigger: TGCTGCCAATGCTGCTGTGTGAAGCTGGAAAGGCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCATCACTTGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 90 bp CTGAAGGTCACATCAAGTCTGAAAGGCAGCTTTGTTCTTTCACTATaGCTGTTATGCATGAAAGAGCAGACGGCTGCGCTCAGGATCCAT +
Preference number: 1 (lower is better)
Translates to: LKVTSSLKGSFVLSL*LLCMKEQTAALRIH
Trigger: ATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCATAACAGGCATAGTGAAAGAACAAAGCTGCCTTTCAGACTTGATGTGACCTTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 90 bp ACATCAAGTCTGAAAGGCAGCTTTGTTCTTTCACTATGCCTGTTATaGATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATTTGAGA +
Preference number: 1 (lower is better)
Translates to: TSSLKGSFVLSLCLL*MKEQTAALRIHNLR
Trigger: TCTCAAATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCATAACAGGCATAGTGAAAGAACAAAGCTGCCTTTCAGACTTGATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp ACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTGGCCACTTGGGCTAAGGCAGGGGCCTTGGAGCTaGCCAGGGAAAGGGAGCTGG +
Preference number: 2 (lower is better)
Translates to: TQHHTVPLAPVPWPLGLRQGPWS*PGKGSW
Trigger: CCAGCTCCCTTTCCCTGGCCAGCTCCAAGGCCCCTG...CCTTAGCCCAAGTGGCCAGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp CAGGAAGCAAGACTACAGCATCACCCAACACCACACAGTCCCCCTCGCGCCCGTAGCAGGAGGGGGCACTaGCTCCAGGAGGCCAGGCCC +
Preference number: 2 (lower is better)
Translates to: QEARLQHHPTPHSPPRARSRRGH*LQEARP
Trigger: GGGCCTGGCCTCCTGGAGCCAGTGCCCCCTCCTGCT...ACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTGATGCTGTAGTCTTGCTTCCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp CAGGAAGCAAGACTACAGCATCACCCAACACCACACAGTCCCCCTCGCGCCCGTGCGTGGGCTGGGAGGTaGCAGCACAGACGGCAGCTT +
Preference number: 2 (lower is better)
Translates to: QEARLQHHPTPHSPPRARAWAGR*QHRRQL
Trigger: AAGCTGCCGTCTGTGCTGCCACCTCCCAGCCCACGC...ACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTGATGCTGTAGTCTTGCTTCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 90 bp CTAGGTCCTAGCACTGTATGGGCCACGTCAGGGACTGGGGCCCCCTaGTGGAGGGAGGGCAGGAGGCAAGCTCTACTCCCAAAGCACCAT +
Preference number: 2 (lower is better)
Translates to: LGPSTVWATSGTGAP*WREGRRQALLPKHH
Trigger: ATGGTGCTTTGGGAGTAGAGCTTGCCTCCTGCCCTCCCTCCACAAGGGGGCCCCAGTCCCTGACGTGGCCCATACAGTGCTAGGACCTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp ACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTGGCCACTTGGGCTAAGGTCTTTGGTCAGGGGCTaGCTCTCTGAGAGCCTCAGT +
Preference number: 2 (lower is better)
Translates to: TQHHTVPLAPVPWPLGLRSLVRG*LSESLS
Trigger: ACTGAGGCTCTCAGAGAGGCAGCCCCTGACCAAAGA...CCTTAGCCCAAGTGGCCAGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp ACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTGGCCACTTGGGCTAAGGGATGCAAGAATCGCCTaGCACAGCCTAGTGCTAGGC +
Preference number: 2 (lower is better)
Translates to: TQHHTVPLAPVPWPLGLRDARIA*HSLVLG
Trigger: GCCTAGCACTAGGCTGTGGCAGGCGATTCTTGCATC...CCTTAGCCCAAGTGGCCAGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp AGCAAGACTACAGCATCACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTTTGGCTGCCTGCTGCTaGTGGCTTATGGTCCGTCCC +
Preference number: 2 (lower is better)
Translates to: SKTTASPNTTQSPSRPYPLAACC*WLMVRP
Trigger: GGGACGGACCATAAGCCACCAGCAGCAGGCAGCCAA...AGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTGATGCTGTAGTCTTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp TACTCGGCCCCGAGGAAGCAGAGCTTGAGGAGCCCCAACTTTCCTGAAAGCCACGCAGCTGATGGCTCCTaGAGTTGGCTGCCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: YSAPRKQSLRSPNFPESHAADGS*SWLPAA
Trigger: AGCAGCAGGCAGCCAACTTCAGGAGCCATCAGCTGC...GTGGCTTTCAGGAAAGTTGGGGCTCCTCAAGCTCTGCTTCCTCGGGGCCGAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp AGCTTTCAGAGCTGTCGGGAGCCATGCAGGCCAGGGGAGGGAGAAAACACATCGCTGGGATGGTCACTGTaGGTCTGGCCAGGACAGGAG +
Preference number: 2 (lower is better)
Translates to: SFQSCREPCRPGEGENTSLGWSL*VWPGQE
Trigger: CTCCTGTCCTGGCCAGACTCACAGTGACCATCCCAG...CGATGTGTTTTCTCCCTCCCCTGGCCTGCATGGCTCCCGACAGCTCTGAAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp ACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTGGCCACTTGGGCTAAGGTCATCCCAGGAATTGTaGGGAAGCAGAAAATGGAGC +
Preference number: 2 (lower is better)
Translates to: TQHHTVPLAPVPWPLGLRSSQEL*GSRKWS
Trigger: GCTCCATTTTCTGCTTCCCCACAATTCCTGGGATGA...CCTTAGCCCAAGTGGCCAGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 90 bp TGCTTCAGGAGTGAGGATGCCCAGAGAAAAGGAACATCAACGGCTTaGGTCATTGTCCTGACGCCCACAGCAGGAGGGGGCACTGGCTCC +
Preference number: 2 (lower is better)
Translates to: CFRSEDAQRKGTSTA*VIVLTPTAGGGTGS
Trigger: GGAGCCAGTGCCCCCTCCTGCTGTGGGCGTCAGGACAATGACCAAAGCCGTTGATGTTCCTTTTCTCTGGGCATCCTCACTCCTGAAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 90 bp TGCCTCTCTGAGAGCCTCAGTTACTCGGCCCCGAGGAAGCAGAGCTaGAGGAGCCCCAACTTTCCTGAAAGCCACGTCCCATCCAGTACA +
Preference number: 2 (lower is better)
Translates to: CLSESLSYSAPRKQS*RSPNFPESHVPSST
Trigger: TGTACTGGATGGGACGTGGCTTTCAGGAAAGTTGGGGCTCCTCAAGCTCTGCTTCCTCGGGGCCGAGTAACTGAGGCTCTCAGAGAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp AGCTTTCAGAGCTGTCGGGAGCCATGCAGGCCAGGGGAGGGAGAAAACACATCGGCTCCTGAAGTTGGCTaGCTGCTGCTGGTGGCTTAT +
Preference number: 2 (lower is better)
Translates to: SFQSCREPCRPGEGENTSAPEVG*LLLVAY
Trigger: ATAAGCCACCAGCAGCAGGCAGCCAACTTCAGGAGC...CGATGTGTTTTCTCCCTCCCCTGGCCTGCATGGCTCCCGACAGCTCTGAAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp AGCTTTCAGAGCTGTCGGGAGCCATGCAGGCCAGGGGAGGGAGAAAACACATCGCGCTCTTCTTACCCTTaGCCAGCATGGCTTCTCTCC +
Preference number: 2 (lower is better)
Translates to: SFQSCREPCRPGEGENTSRSSYP*PAWLLS
Trigger: GGAGAGAAGCCATGCTGGCCAAGGGTAAGAAGAGCG...CGATGTGTTTTCTCCCTCCCCTGGCCTGCATGGCTCCCGACAGCTCTGAAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 90 bp CTGAACACTCATGTCTGTACCCATGGACCAGCGCTCTTCTTACCCTaGGCCAGCATGGCTTCTCTCCACAGTGGGCAGCCGTTACTGCAG +
Preference number: 2 (lower is better)
Translates to: LNTHVCTHGPALFLP*ASMASLHSGQPLLQ
Trigger: CTGCAGTAACGGCTGCCCACTGTGGAGAGAAGCCATGCTGGCCAAGGGTAAGAAGAGCGCTGGTCCATGGGTACAGACATGAGTGTTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp AGCTTTCAGAGCTGTCGGGAGCCATGCAGGCCAGGGGAGGGAGAAAACACATCGCAGTCACGGGCCTCATaGGGGACTTCTTACTGTTCT +
Preference number: 2 (lower is better)
Translates to: SFQSCREPCRPGEGENTSQSRAS*GTSYCS
Trigger: AGAACAGTAAGAAGTCCCTCATGAGGCCCGTGACTG...CGATGTGTTTTCTCCCTCCCCTGGCCTGCATGGCTCCCGACAGCTCTGAAAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp AGCTTTGGTATCAGATCTGGGTTCTGTTCTCAACTCCACCCCTCAACACGTGTGCAGGAGGCCAGGCCCTaGCCCACACACATGAGCACC +
Preference number: 2 (lower is better)
Translates to: SFGIRSGFCSQLHPSTRVQEARP*PTHMST
Trigger: GGTGCTCATGTGTGTGGGGCAGGGCCTGGCCTCCTG...CACACGTGTTGAGGGGTGGAGTTGAGAACAGAACCCAGATCTGATACCAAAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp ACTTCTGCCTTGATTCAGTCATTACCATACGGAGTCAGGAAGTGCCTGGGCACCCCCTGCAGAGTCCCATaGTGGGCATGTCCAGGGCAG +
Preference number: 2 (lower is better)
Translates to: TSALIQSLPYGVRKCLGTPCRVP*WACPGQ
Trigger: CTGCCCTGGACATGCCCACCATGGGACTCTGCAGGG...GGTGCCCAGGCACTTCCTGACTCCGTATGGTAATGACTGAATCAAGGCAGAAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 90 bp CTCTCTCCCAAGGATCAGGGAACACTGGGAAGAGGAGGCGCGCTGTaGTCTAGACGGGATATAGACAGCACAGTCAAGAACTCACCACGG +
Preference number: 2 (lower is better)
Translates to: LSPKDQGTLGRGGAL*SRRDIDSTVKNSPR
Trigger: CCGTGGTGAGTTCTTGACTGTGCTGTCTATATCCCGTCTAGACAACAGCGCGCCTCCTCTTCCCAGTGTTCCCTGATCCTTGGGAGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 90 bp CAGGGGGAGGGCCACCTCAGGACACTGAACACATGGGACCTGAGTTaGAGGCCTGTGGTAATTAACCTCTACGATCCCCACAAAGGCAGA +
Preference number: 2 (lower is better)
Translates to: QGEGHLRTLNTWDLS*RPVVINLYDPHKGR
Trigger: TCTGCCTTTGTGGGGATCGTAGAGGTTAATTACCACAGGCCTCAAACTCAGGTCCCATGTGTTCAGTGTCCTGAGGTGGCCCTCCCCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp TGCATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATTTGAGACATCCGGAGCCCCCTCTCCCCGAGTaGCTGTGCAACCTGAATCTG +
Preference number: 2 (lower is better)
Translates to: CMKEQTAALRIHNLRHPEPPLPE*LCNLNL
Trigger: CAGATTCAGGTTGCACAGTCACTCGGGGAGAGGGGG...CTCCGGATGTCTCAAATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp ACTTCTGCCTTGATTCAGTCATTACCATACGGAGTCAGGAAGTGCCTGGGCACCCTTTGGTCATTGTCCTaGCGCCCACAGCAGGAGGGG +
Preference number: 2 (lower is better)
Translates to: TSALIQSLPYGVRKCLGTLWSLS*RPQQEG
Trigger: CCCCTCCTGCTGTGGGCGTCAGGACAATGACCAAAG...GGTGCCCAGGCACTTCCTGACTCCGTATGGTAATGACTGAATCAAGGCAGAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp ATTAAGGGTCAAGAGCAGAGGCCTCTTGTCATCCACAGACAGGGCCAAGCTGGTGGGAAGGGGTACACATaGGCACACTCTCACACTCGT +
Preference number: 2 (lower is better)
Translates to: IKGQEQRPLVIHRQGQAGGKGYT*AHSHTR
Trigger: ACGAGTGTGAGAGTGTGCCCATGTGTACCCCTTCCC...ACCAGCTTGGCCCTGTCTGTGGATGACAAGAGGCCTCTGCTCTTGACCCTTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp AGCTTTCAGAGCTGTCGGGAGCCATGCAGGCCAGGGGAGGGAGAAAACACATCGACTTCAAAACACATCTaGCCAGAAGTCAGCGGCATA +
Preference number: 2 (lower is better)
Translates to: SFQSCREPCRPGEGENTSTSKHI*PEVSGI
Trigger: TATGCCGCTGACTTCTGGGCAGATGTGTTTTGAAGT...CGATGTGTTTTCTCCCTCCCCTGGCCTGCATGGCTCCCGACAGCTCTGAAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp ACTTCTGCCTTGATTCAGTCATTACCATACGGAGTCAGGAAGTGCCTGGGCACCCAAGAATTCTCCAAGTaGCCCCCAACCCCCAAGGCA +
Preference number: 2 (lower is better)
Translates to: TSALIQSLPYGVRKCLGTQEFSK*PPTPKA
Trigger: TGCCTTGGGGGTTGGGGGGCACTTGGAGAATTCTTG...GGTGCCCAGGCACTTCCTGACTCCGTATGGTAATGACTGAATCAAGGCAGAAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp ACTTCTGCCTTGATTCAGTCATTACCATACGGAGTCAGGAAGTGCCTGGGCACCGCAGGTTGCCTGTTCTaGTGCACCAGGCAGGGTAAA +
Preference number: 2 (lower is better)
Translates to: TSALIQSLPYGVRKCLGTAGCLF*CTRQGK
Trigger: TTTACCCTGCCTGGTGCAGCAGAACAGGCAACCTGC...GGTGCCCAGGCACTTCCTGACTCCGTATGGTAATGACTGAATCAAGGCAGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp CACAAGCGATGGAAAGATGTTGTTAGTTTGGCTGAGATTCAGGATGCCAGAGCCGGTCCTAGCACTGTATaGGCCACGTCAGGGACTGGG +
Preference number: 2 (lower is better)
Translates to: HKRWKDVVSLAEIQDARAGPSTV*ATSGTG
Trigger: CCCAGTCCCTGACGTGGCCCATACAGTGCTAGGACC...GGCTCTGGCATCCTGAATCTCAGCCAAACTAACAACATCTTTCCATCGCTTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp CCTCTGGGAGTAAGGAAGACCCAGCACACTACAACTTGTGCCTGCTGGGAAGTGGCAACTCTGAGTCACTaGAGAGTCATGGGAACAGCA +
Preference number: 2 (lower is better)
Translates to: PLGVRKTQHTTTCACWEVATLSH*RVMGTA
Trigger: TGCTGTTCCCATGACTCTCCAGTGACTCAGAGTTGC...CACTTCCCAGCAGGCACAAGTTGTAGTGTGCTGGGTCTTCCTTACTCCCAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 90 bp ATTGTTTCCTGCTCAGAACTGCCTTTCCAGCTTCACACAGCAGCATaGGCAGCAGGCACAGGAAGCAAGACTACAGCATCACCCAACACC +
Preference number: 2 (lower is better)
Translates to: IVSCSELPFQLHTAA*AAGTGSKTTASPNT
Trigger: GGTGTTGGGTGATGCTGTAGTCTTGCTTCCTGTGCCTGCTGCCAATGCTGCTGTGTGAAGCTGGAAAGGCAGTTCTGAGCAGGAAACAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp GGTCACTGTGAGTCTGGCCAGGACAGGAGCAGCTGGATCATAGCAATCTCTTGGACACACATGAGCACCTaGATCAAACTGGTTTCCGAG +
Preference number: 2 (lower is better)
Translates to: GHCESGQDRSSWIIAISWTHMST*IKLVSE
Trigger: CTCGGAAACCAGTTTGATTCAGGTGCTCATGTGTGT...CCAAGAGATTGCTATGATCCAGCTGCTCCTGTCCTGGCCAGACTCACAGTGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp ATTAAGGGTCAAGAGCAGAGGCCTCTTGTCATCCACAGACAGGGCCAAGCTGGTGGTGATCACCATGGTTaGAGTGACTCTGGGAGTCAT +
Preference number: 2 (lower is better)
Translates to: IKGQEQRPLVIHRQGQAGGDHHG*SDSGSH
Trigger: ATGACTCCCAGAGTCACTGCAACCATGGTGATCACC...ACCAGCTTGGCCCTGTCTGTGGATGACAAGAGGCCTCTGCTCTTGACCCTTAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp ATTAAGGGTCAAGAGCAGAGGCCTCTTGTCATCCACAGACAGGGCCAAGCTGGTAATTCGAGTGGGCCATaGTCATTCCTAGCACTGAGC +
Preference number: 2 (lower is better)
Translates to: IKGQEQRPLVIHRQGQAGNSSGP*SFLALS
Trigger: GCTCAGTGCTAGGAATGAGCATGGCCCACTCGAATT...ACCAGCTTGGCCCTGTCTGTGGATGACAAGAGGCCTCTGCTCTTGACCCTTAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp ACTTCTGCCTTGATTCAGTCATTACCATACGGAGTCAGGAAGTGCCTGGGCACCCTCCCTACAACTTATTaGTCAGGGAGGTCCCAGAGG +
Preference number: 2 (lower is better)
Translates to: TSALIQSLPYGVRKCLGTLPTTY*SGRSQR
Trigger: CCTCTGGGACCTCCCTGACCAATAAGTTGTAGGGAG...GGTGCCCAGGCACTTCCTGACTCCGTATGGTAATGACTGAATCAAGGCAGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp ATGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTGCTCAGAACTGCCTTTCCAGGGGCTGCCTCTCTaGGAGCCTCAGTTACTCGGC +
Preference number: 2 (lower is better)
Translates to: MLTLRKGTFIVSCSELPFQGLPL*EPQLLG
Trigger: GCCGAGTAACTGAGGCTCTCAGAGAGGCAGCCCCTG...GAAAGGCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp CACAAGCGATGGAAAGATGTTGTTAGTTTGGCTGAGATTCAGGATGCCAGAGCCCTGAAGTTGGCTGCCTaGTGCTGGTGGCTTATGGTC +
Preference number: 2 (lower is better)
Translates to: HKRWKDVVSLAEIQDARALKLAA*CWWLMV
Trigger: GACCATAAGCCACCAGCAGCAGGCAGCCAACTTCAG...GGCTCTGGCATCCTGAATCTCAGCCAAACTAACAACATCTTTCCATCGCTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp ATTAAGGGTCAAGAGCAGAGGCCTCTTGTCATCCACAGACAGGGCCAAGCTGGTAAGACACACTCTGCTTaGTCTGACACAGACATCAGC +
Preference number: 2 (lower is better)
Translates to: IKGQEQRPLVIHRQGQAGKTHSA*SDTDIS
Trigger: GCTGATGTCTGTGTCAGAGCAAGCAGAGTGTGTCTT...ACCAGCTTGGCCCTGTCTGTGGATGACAAGAGGCCTCTGCTCTTGACCCTTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp ATGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTGCTCAGAACTGCCTTTCCGTACCCTGGCCACTTaGGCTAAGGAGCAGGGGCCT +
Preference number: 2 (lower is better)
Translates to: MLTLRKGTFIVSCSELPFRTLAT*AKEQGP
Trigger: AGGCCCCTGCTCCTTAGCCCAAGTGGCCAGGGTACG...GAAAGGCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp ACTTCTGCCTTGATTCAGTCATTACCATACGGAGTCAGGAAGTGCCTGGGCACCACACTCTGCTTGCTCTaGCACAGACATCAGCTGAAA +
Preference number: 2 (lower is better)
Translates to: TSALIQSLPYGVRKCLGTTLCLL*HRHQLK
Trigger: TTTCAGCTGATGTCTGTGTCAGAGCAAGCAGAGTGT...GGTGCCCAGGCACTTCCTGACTCCGTATGGTAATGACTGAATCAAGGCAGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp TCACTATGCCTGTTATGCATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATACAGGCCCACTGGTGTaGTCTTACATCACCCAACAG +
Preference number: 2 (lower is better)
Translates to: SLCLLCMKEQTAALRIHNTGPLV*SYITQQ
Trigger: CTGTTGGGTGATGTAAGACCACACCAGTGGGCCTGT...ATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCATAACAGGCATAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp ACTTCTGCCTTGATTCAGTCATTACCATACGGAGTCAGGAAGTGCCTGGGCACCGGCAGAAATAAGCTTTaGATTGAGATACCCCGGGGT +
Preference number: 2 (lower is better)
Translates to: TSALIQSLPYGVRKCLGTGRNKL*IEIPRG
Trigger: ACCCCGGGGTATCTCAATCCAAAGCTTATTTCTGCC...GGTGCCCAGGCACTTCCTGACTCCGTATGGTAATGACTGAATCAAGGCAGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp GCCACCCTCTGCTTCTGTCCCCTTTTACACAAAGCCACACATCTTGAATTCGAGCAGCAATACTCCAAGTaGTGCTCACACTCAGAAAGG +
Preference number: 2 (lower is better)
Translates to: ATLCFCPLLHKATHLEFEQQYSK*CSHSER
Trigger: CCTTTCTGAGTGTGAGCATCACTTGGAGTATTGCTG...CTCGAATTCAAGATGTGTGGCTTTGTGTAAAAGGGGACAGAAGCAGAGGGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp GGTCACTGTGAGTCTGGCCAGGACAGGAGCAGCTGGATCATAGCAATCTCTTGGAAGATGTTGTTAGTTTaGCTGAGATTCAGGATGCCA +
Preference number: 2 (lower is better)
Translates to: GHCESGQDRSSWIIAISWKMLLV*LRFRMP
Trigger: TGGCATCCTGAATCTCAGCCAAACTAACAACATCTT...CCAAGAGATTGCTATGATCCAGCTGCTCCTGTCCTGGCCAGACTCACAGTGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp ATTAAGGGTCAAGAGCAGAGGCCTCTTGTCATCCACAGACAGGGCCAAGCTGGTACACAGTCTTTACACTaGTTTACACTGCACAGAAGA +
Preference number: 2 (lower is better)
Translates to: IKGQEQRPLVIHRQGQAGTQSLH*FTLHRR
Trigger: TCTTCTGTGCAGTGTAAAGCAGTGTAAAGACTGTGT...ACCAGCTTGGCCCTGTCTGTGGATGACAAGAGGCCTCTGCTCTTGACCCTTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp CACAAGCGATGGAAAGATGTTGTTAGTTTGGCTGAGATTCAGGATGCCAGAGCCTGGTCAGAAAATAGCTaGGGAGTTTTGGTTCCTGGG +
Preference number: 2 (lower is better)
Translates to: HKRWKDVVSLAEIQDARAWSENS*GVLVPG
Trigger: CCCAGGAACCAAAACTCCCCAGCTATTTTCTGACCA...GGCTCTGGCATCCTGAATCTCAGCCAAACTAACAACATCTTTCCATCGCTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp ATTAAGGGTCAAGAGCAGAGGCCTCTTGTCATCCACAGACAGGGCCAAGCTGGTAGTAGGCCTATTCAATaGAATGAAGGCATAAATGCC +
Preference number: 2 (lower is better)
Translates to: IKGQEQRPLVIHRQGQAGSRPIQ*NEGINA
Trigger: GGCATTTATGCCTTCATTCCATTGAATAGGCCTACT...ACCAGCTTGGCCCTGTCTGTGGATGACAAGAGGCCTCTGCTCTTGACCCTTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp ATGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTGCTCAGAACTGCCTTTCTTTTCCTGGGGACACTaGGACCAGCTTTCACAAGCG +
Preference number: 2 (lower is better)
Translates to: MLTLRKGTFIVSCSELPFFSWGH*DQLSQA
Trigger: CGCTTGTGAAAGCTGGTCTCAGTGTCCCCAGGAAAA...GAAAGGCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 90 bp CCTGTGGTAATTAACCTCTACGATCCCCACAAAGGCAGATATGACTaGGCAGCCATTAGGTCAACTCAAACTCACTATGTGACACTGCAA +
Preference number: 2 (lower is better)
Translates to: PVVINLYDPHKGRYD*AAIRSTQTHYVTLQ
Trigger: TTGCAGTGTCACATAGTGAGTTTGAGTTGACCTAATGGCTGCCAAGTCATATCTGCCTTTGTGGGGATCGTAGAGGTTAATTACCACAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp ATGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTGCTCAGAACTGCCTTTCTTACTGCTTCAGGAGTaGGGATGCCCAGAGAAAAGG +
Preference number: 2 (lower is better)
Translates to: MLTLRKGTFIVSCSELPFLLLQE*GCPEKR
Trigger: CCTTTTCTCTGGGCATCCTCACTCCTGAAGCAGTAA...GAAAGGCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR GCA 90 bp TGCATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATTTGAGACATCCGGAGACGGGAGAGTTAAAGTaGAGAGTTAAATGTGTCTTT +
Preference number: 2 (lower is better)
Translates to: CMKEQTAALRIHNLRHPETGELK*RVKCVF
Trigger: AAAGACACATTTAACTCTGCACTTTAACTCTCCCGT...CTCCGGATGTCTCAAATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp ATGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTGCTCAGAACTGCCTTTCGGGAGTTTTGGTTCCTaGGAGGACAACAAAGCCACA +
Preference number: 2 (lower is better)
Translates to: MLTLRKGTFIVSCSELPFGSFGS*EDNKAT
Trigger: TGTGGCTTTGTTGTCCTCCCAGGAACCAAAACTCCC...GAAAGGCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CCA 90 bp ATGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTGCTCAGAACTGCCTTTCATAGCTGGGGAGTTTTaGTTCCTGGGAGGACAACAA +
Preference number: 2 (lower is better)
Translates to: MLTLRKGTFIVSCSELPFIAGEF*FLGGQQ
Trigger: TTGTTGTCCTCCCAGGAACCAAAACTCCCCAGCTAT...GAAAGGCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR TCA 90 bp TCACTATGCCTGTTATGCATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATCATATTCGATCCAAATaGCCTTTTGCTCTGAGAAAA +
Preference number: 2 (lower is better)
Translates to: SLCLLCMKEQTAALRIHNHIRSK*PFALRK
Trigger: TTTTCTCAGAGCAAAAGGTCATTTGGATCGAATATG...ATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCATAACAGGCATAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp ACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTaGCCACTTGGGCTAAGGAGCAGGGGCCTTGGAGCT +
Preference number: 3 (lower is better)
Translates to: TQHHTVPLAPVP*PLGLRSRGLGA
Trigger: AGCTCCAAGGCCCCTGCTCCTTAGCCCAAGTGGCCAGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp CCTGGTGCAATGGGCACATGGCCCTGCAGAGTCCCATaGTGGGCATGTCCAGGGCAGCAGCCCAAGGTGGGC +
Preference number: 3 (lower is better)
Translates to: PGAMGTWPCRVP*WACPGQQPKVG
Trigger: GCCCACCTTGGGCTGCTGCCCTGGACATGCCCACCATGGGACTCTGCAGGGCCATGTGCCCATTGCACCAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp TCATGGGCAGCTGGTACACTAGGTCCTAGCACTGTATaGGCCACGTCAGGGACTGGGGCCCCCTTGTGGAGG +
Preference number: 3 (lower is better)
Translates to: SWAAGTLGPSTV*ATSGTGAPLWR
Trigger: CCTCCACAAGGGGGCCCCAGTCCCTGACGTGGCCCATACAGTGCTAGGACCTAGTGTACCAGCTGCCCATGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp GATCAGCAGAAATGCGCTGATGGTTGCCTAGCAGCATaGCCTCGTGTCCCAGCCCACTTCTGTCTGGGCCGG +
Preference number: 3 (lower is better)
Translates to: DQQKCADGCLAA*PRVPAHFCLGR
Trigger: CCGGCCCAGACAGAAGTGGGCTGGGACACGAGGCCATGCTGCTAGGCAACCATCAGCGCATTTCTGCTGATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp CCATACGGAGTCAGGAAGTGCCTGGGCACCTGGTCATaGAGTGGCTCACACAGGGCCCCCAAAAGCAGAGCT +
Preference number: 3 (lower is better)
Translates to: PYGVRKCLGTWS*SGSHRAPKSRA
Trigger: AGCTCTGCTTTTGGGGGCCCTGTGTGAGCCACTCCATGACCAGGTGCCCAGGCACTTCCTGACTCCGTATGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp TGGCCGGGGAGTCCCCAGATAGAAGCCCGTGGAACTTaGGGAATGTGGCCTTGCTGGGATGGTCACTGTGAG +
Preference number: 3 (lower is better)
Translates to: WPGSPQIEARGT*GMWPCWDGHCE
Trigger: CTCACAGTGACCATCCCAGCAAGGCCACATTCCTCAAGTTCCACGGGCTTCTATCTGGGGACTCCCCGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp CACACTATCGCAGTCTGCAGAAGAAGGAAGGTACCCTaGTGGCCCAACAACTGGGGACCTGCCTTCGCCCTC +
Preference number: 3 (lower is better)
Translates to: HTIAVCRRRKVP*WPNNWGPAFAL
Trigger: GAGGGCGAAGGCAGGTCCCCAGTTGTTGGGCCAGCAGGGTACCTTCCTTCTTCTGCAGACTGCGATAGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp GCGTGGGCTGGGAGGTGGCAGCACAGACGGCAGCTTTaGTATCAGATCTGGGTTCTGTTCTCAACTCCACCC +
Preference number: 3 (lower is better)
Translates to: AWAGRWQHRRQL*YQIWVLFSTPP
Trigger: GGGTGGAGTTGAGAACAGAACCCAGATCTGATACCAAAGCTGCCGTCTGTGCTGCCACCTCCCAGCCCACGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp CATGGGAACAGCACCATCCCTGGGAAGGGGTACACATaGGCACACTCTCACACTCGTGTCTCAGGAGCCCAG +
Preference number: 3 (lower is better)
Translates to: HGNSTIPGKGYT*AHSHTRVSGAQ
Trigger: CTGGGCTCCTGAGACACGAGTGTGAGAGTGTGCCCATGTGTACCCCTTCCCAGGGATGGTGCTGTTCCCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp GAAAAGGAAAAGACAGGGCCTGGTGCAATGGGCACATaGCCCTGCAGAGTCCCATGGTGGGCATGTCCAGGG +
Preference number: 3 (lower is better)
Translates to: EKEKTGPGAMGT*PCRVPWWACPG
Trigger: CCCTGGACATGCCCACCATGGGACTCTGCAGGGCCATGTGCCCATTGCACCAGGCCCTGTCTTTTCCTTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp CTGGCAGGGAAAAGGAAAAGACAGGGCCTGGTGCAATaGGCACATGGCCCTGCAGAGTCCCATGGTGGGCAT +
Preference number: 3 (lower is better)
Translates to: LAGKRKRQGLVQ*AHGPAESHGGH
Trigger: ATGCCCACCATGGGACTCTGCAGGGCCATGTGCCCATTGCACCAGGCCCTGTCTTTTCCTTTTCCCTGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp TCAGAGCTGACTAGCTTTCAGAGCTGTCGGGAGCCATaGAGGCCAGGGGAGGGAGAAAACACATCGGTCGTC +
Preference number: 3 (lower is better)
Translates to: SELTSFQSCREP*RPGEGENTSVV
Trigger: GACGACCGATGTGTTTTCTCCCTCCCCTGGCCTGCATGGCTCCCGACAGCTCTGAAAGCTAGTCAGCTCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp TCAAGCTGGCAGGGAAAAGGAAAAGACAGGGCCTGGTaGAATGGGCACATGGCCCTGCAGAGTCCCATGGTG +
Preference number: 3 (lower is better)
Translates to: SSWQGKGKDRAW*NGHMALQSPMV
Trigger: CACCATGGGACTCTGCAGGGCCATGTGCCCATTGCACCAGGCCCTGTCTTTTCCTTTTCCCTGCCAGCTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp GGAGGACAACAAAGCCACAGAGAAAGAGGCGTGGGCTaGGAGGTGGCAGCACAGACGGCAGCTTTGGTATCA +
Preference number: 3 (lower is better)
Translates to: GGQQSHRERGVG*EVAAQTAALVS
Trigger: TGATACCAAAGCTGCCGTCTGTGCTGCCACCTCCCAGCCCACGCCTCTTTCTCTGTGGCTTTGTTGTCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp ACTATCGCAGTCTGCAGAAGAAGGAAGGTACCCTGCTaGCCCAACAACTGGGGACCTGCCTTCGCCCTCCAT +
Preference number: 3 (lower is better)
Translates to: TIAVCRRRKVPC*PNNWGPAFALH
Trigger: ATGGAGGGCGAAGGCAGGTCCCCAGTTGTTGGGCCAGCAGGGTACCTTCCTTCTTCTGCAGACTGCGATAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp ATGTCTGTACCCATGGACCAGCGCTCTTCTTACCCTTaGCCAGCATGGCTTCTCTCCACAGTGGGCAGCCGT +
Preference number: 3 (lower is better)
Translates to: MSVPMDQRSSYP*PAWLLSTVGSR
Trigger: ACGGCTGCCCACTGTGGAGAGAAGCCATGCTGGCCAAGGGTAAGAAGAGCGCTGGTCCATGGGTACAGACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp GCATCCCGTGCAATACCCCTCAACCCTGTTTCCCACTaGCGTAGGCAAGCATGCAGGACCAGTGACTTCTGG +
Preference number: 3 (lower is better)
Translates to: ASRAIPLNPVSH*RRQACRTSDFW
Trigger: CCAGAAGTCACTGGTCCTGCATGCTTGCCTACGCCAGTGGGAAACAGGGTTGAGGGGTATTGCACGGGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp TCATTACCATACGGAGTCAGGAAGTGCCTGGGCACCTaGTCATGGAGTGGCTCACACAGGGCCCCCAAAAGC +
Preference number: 3 (lower is better)
Translates to: SLPYGVRKCLGT*SWSGSHRAPKS
Trigger: GCTTTTGGGGGCCCTGTGTGAGCCACTCCATGACCAGGTGCCCAGGCACTTCCTGACTCCGTATGGTAATGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CAA 90 bp CCTCTGGGAGTAAGGAAGACCCAGCACACTACAACTTGTGCCTGCTGGGAAGTGAAGAGCAGAGGCCTCTaGTCATCCACAGACAGGGCC +
Preference number: 3 (lower is better)
Translates to: PLGVRKTQHTTTCACWEVKSRGL*SSTDRA
Trigger: GGCCCTGTCTGTGGATGACAAGAGGCCTCTGCTCTT...CACTTCCCAGCAGGCACAAGTTGTAGTGTGCTGGGTCTTCCTTACTCCCAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp CAGGAGGCCAGGCCCTGCCCCACACACATGAGCACCTaGATCAAACTGGTTTCCGAGCATAAACCAGGAGTC +
Preference number: 3 (lower is better)
Translates to: QEARPCPTHMST*IKLVSEHKPGV
Trigger: GACTCCTGGTTTATGCTCGGAAACCAGTTTGATTCAGGTGCTCATGTGTGTGGGGCAGGGCCTGGCCTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp AGAGAAAAGGAACATCAACGGCTTTGGTCATTGTCCTaGCGCCCACAGCAGGAGGGGGCACTGGCTCCAGGA +
Preference number: 3 (lower is better)
Translates to: REKEHQRLWSLS*RPQQEGALAPG
Trigger: TCCTGGAGCCAGTGCCCCCTCCTGCTGTGGGCGTCAGGACAATGACCAAAGCCGTTGATGTTCCTTTTCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp CCCGAGGAAGCAGAGCTTGAGGAGCCCCAACTTTCCTaGAAGCCACGTCCCATCCAGTACACAAAGAACGGC +
Preference number: 3 (lower is better)
Translates to: PEEAELEEPQLS*KPRPIQYTKNG
Trigger: GCCGTTCTTTGTGTACTGGATGGGACGTGGCTTTCAGGAAAGTTGGGGCTCCTCAAGCTCTGCTTCCTCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp CCCGACCACCAGCTAGGGTCGAGGGACCACTACGGCTaGAGGTCAGAAAAGGACAGCAAGATGTTTCTAGAG +
Preference number: 3 (lower is better)
Translates to: PDHQLGSRDHYG*RSEKDSKMFLE
Trigger: CTCTAGAAACATCTTGCTGTCCTTTTCTGACCTGCAGCCGTAGTGGTCCCTCGACCCTAGCTGGTGGTCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp GTAGTCCTTCCTACTAGCCAAGCAGGTTGCCTGTTCTaGTGCACCAGGCAGGGTAAACCCAGTCTCCAGCCT +
Preference number: 3 (lower is better)
Translates to: VVLPTSQAGCLF*CTRQGKPSLQP
Trigger: AGGCTGGAGACTGGGTTTACCCTGCCTGGTGCAGCAGAACAGGCAACCTGCTTGGCTAGTAGGAAGGACTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp ATCCACAGACAGGGCCAAGCTGGTGATCAGCAGAAATaGGCTGATGGTTGCCTAGCAGCATGGCCTCGTGTC +
Preference number: 3 (lower is better)
Translates to: IHRQGQAGDQQK*ADGCLAAWPRV
Trigger: GACACGAGGCCATGCTGCTAGGCAACCATCAGCGCATTTCTGCTGATCACCAGCTTGGCCCTGTCTGTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp CTGCAGGGGGAGGGCCACCTCAGGACACTGAACACATaGGACCTGAGTTTGAGGCCTGTGGTAATTAACCTC +
Preference number: 3 (lower is better)
Translates to: LQGEGHLRTLNT*DLSLRPVVINL
Trigger: GAGGTTAATTACCACAGGCCTCAAACTCAGGTCCCATGTGTTCAGTGTCCTGAGGTGGCCCTCCCCCTGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CAA 90 bp AGCTTTCAGAGCTGTCGGGAGCCATGCAGGCCAGGGGAGGGAGAAAACACATCGGAGTTAAATGTGTCTTaGGTCAGGGGCTGCCTCTCT +
Preference number: 3 (lower is better)
Translates to: SFQSCREPCRPGEGENTSELNVS*VRGCLS
Trigger: AGAGAGGCAGCCCCTGACCAAAGACACATTTAACTC...CGATGTGTTTTCTCCCTCCCCTGGCCTGCATGGCTCCCGACAGCTCTGAAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp AACTTGAGGAATGTGGCCTTGCTGGGATGGTCACTGTaGGTCTGGCCAGGACAGGAGCAGCTGGATCATAGC +
Preference number: 3 (lower is better)
Translates to: NLRNVALLGWSL*VWPGQEQLDHS
Trigger: GCTATGATCCAGCTGCTCCTGTCCTGGCCAGACTCACAGTGACCATCCCAGCAAGGCCACATTCCTCAAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp CTGCAAATTCCTGTGCTGCCTGTGACCTGCGGCTCCTaGCCTCTTCAGAAGGCTCCCAGAAGCCTTCTACTT +
Preference number: 3 (lower is better)
Translates to: LQIPVLPVTCGS*PLQKAPRSLLL
Trigger: AAGTAGAAGGCTTCTGGGAGCCTTCTGAAGAGGTCAGGAGCCGCAGGTCACAGGCAGCACAGGAATTTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp GCCTTGATTCAGTCATTACCATACGGAGTCAGGAAGTaGCTGGGCACCTGGTCATGGAGTGGCTCACACAGG +
Preference number: 3 (lower is better)
Translates to: ALIQSLPYGVRK*LGTWSWSGSHR
Trigger: CCTGTGTGAGCCACTCCATGACCAGGTGCCCAGGCACTTCCTGACTCCGTATGGTAATGACTGAATCAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CAA 90 bp TGCATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATTTGAGACATCCGGAGCCGAGGAAGCAGAGCTaGAGGAGCCCCAACTTTCCT +
Preference number: 3 (lower is better)
Translates to: CMKEQTAALRIHNLRHPEPRKQS*RSPNFP
Trigger: AGGAAAGTTGGGGCTCCTCAAGCTCTGCTTCCTCGG...CTCCGGATGTCTCAAATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp CTAGCACTGAGCCCAGGTCCAATAGCAGGTAAACCCTaGAACTCTGAGTCACTGGAGAGTCATGGGAACAGC +
Preference number: 3 (lower is better)
Translates to: LALSPGPIAGKP*NSESLESHGNS
Trigger: GCTGTTCCCATGACTCTCCAGTGACTCAGAGTTGCAGGGTTTACCTGCTATTGGACCTGGGCTCAGTGCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp AAACTGGTTTCCGAGCATAAACCAGGAGTCACCAACTaGATACCGCAGGCATCTTTCTCCCCCTCTCCCCGA +
Preference number: 3 (lower is better)
Translates to: KLVSEHKPGVTN*IPQASFSPSPR
Trigger: TCGGGGAGAGGGGGAGAAAGATGCCTGCGGTATCCAGTTGGTGACTCCTGGTTTATGCTCGGAAACCAGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp GCTCAGAACTGCCTTTCCAGCTTCACACAGCAGCATTaGCAGCAGGCACAGGAAGCAAGACTACAGCATCAC +
Preference number: 3 (lower is better)
Translates to: AQNCLSSFTQQH*QQAQEARLQHH
Trigger: GTGATGCTGTAGTCTTGCTTCCTGTGCCTGCTGCCAATGCTGCTGTGTGAAGCTGGAAAGGCAGTTCTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp ACCCAGCACACTACAACTTGTGCCTGCTGGGAAGTGTaGAACCAGGGCCTTGATGACCTGCAAATTCCTGTG +
Preference number: 3 (lower is better)
Translates to: TQHTTTCACWEV*NQGLDDLQIPV
Trigger: CACAGGAATTTGCAGGTCATCAAGGCCCTGGTTCCACACTTCCCAGCAGGCACAAGTTGTAGTGTGCTGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp GTAAGGAAGACCCAGCACACTACAACTTGTGCCTGCTaGGAAGTGTGGAACCAGGGCCTTGATGACCTGCAA +
Preference number: 3 (lower is better)
Translates to: VRKTQHTTTCAC*EVWNQGLDDLQ
Trigger: TTGCAGGTCATCAAGGCCCTGGTTCCACACTTCCCAGCAGGCACAAGTTGTAGTGTGCTGGGTCTTCCTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CAA 90 bp CCTCTGGGAGTAAGGAAGACCCAGCACACTACAACTTGTGCCTGCTGGGAAGTGAATAGCTGGGGAGTTTaGGTTCCTGGGAGGACAACA +
Preference number: 3 (lower is better)
Translates to: PLGVRKTQHTTTCACWEVNSWGV*VPGRTT
Trigger: TGTTGTCCTCCCAGGAACCAAAACTCCCCAGCTATT...CACTTCCCAGCAGGCACAAGTTGTAGTGTGCTGGGTCTTCCTTACTCCCAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CAA 90 bp AGCAAGACTACAGCATCACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTAGCGATGGAAAGATGTaGTTAGTTTGGCTGAGATTC +
Preference number: 3 (lower is better)
Translates to: SKTTASPNTTQSPSRPYPSDGKM*LVWLRF
Trigger: GAATCTCAGCCAAACTAACAACATCTTTCCATCGCT...AGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTGATGCTGTAGTCTTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp GGACCTCGAACCATGGCCACTACGGGAGAGTTAAAGTaGAGAGTTAAATGTGTCTTTGGTCAGGGGCTGCCT +
Preference number: 3 (lower is better)
Translates to: GPRTMATTGELK*RVKCVFGQGLP
Trigger: AGGCAGCCCCTGACCAAAGACACATTTAACTCTGCACTTTAACTCTCCCGTAGTGGCCATGGTTCGAGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp AGAGCCCGACCAGAACACACTGTTAGAAACAGAGAGTaGTTACGCACAGGCCCACTGGTGTGGTCTTACATC +
Preference number: 3 (lower is better)
Translates to: RARPEHTVRNRE*LRTGPLVWSYI
Trigger: GATGTAAGACCACACCAGTGGGCCTGTGCGTAAGCACTCTCTGTTTCTAACAGTGTGTTCTGGTCGGGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp GATGGTCACTGTGAGTCTGGCCAGGACAGGAGCAGCTaGATCATAGCAATCTCTTGGGAAATCCCTACATGG +
Preference number: 3 (lower is better)
Translates to: DGHCESGQDRSS*IIAISWEIPTW
Trigger: CCATGTAGGGATTTCCCAAGAGATTGCTATGATCCAGCTGCTCCTGTCCTGGCCAGACTCACAGTGACCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CAA 90 bp GGTCACTGTGAGTCTGGCCAGGACAGGAGCAGCTGGATCATAGCAATCTCTTGGGTATCATCCCAGGAATaGTGGGGAAGCAGAAAATGG +
Preference number: 3 (lower is better)
Translates to: GHCESGQDRSSWIIAISWVSSQE*WGSRKW
Trigger: CCATTTTCTGCTTCCCCACAATTCCTGGGATGATAC...CCAAGAGATTGCTATGATCCAGCTGCTCCTGTCCTGGCCAGACTCACAGTGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CAA 90 bp AGCTTTCAGAGCTGTCGGGAGCCATGCAGGCCAGGGGAGGGAGAAAACACATCGGAAAGGGAACATTTATaGTTTCCTGCTCAGAACTGC +
Preference number: 3 (lower is better)
Translates to: SFQSCREPCRPGEGENTSEREHL*FPAQNC
Trigger: GCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTC...CGATGTGTTTTCTCCCTCCCCTGGCCTGCATGGCTCCCGACAGCTCTGAAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CAA 90 bp ATTAAGGGTCAAGAGCAGAGGCCTCTTGTCATCCACAGACAGGGCCAAGCTGGTACATGGGACCTGAGTTaGAGGCCTGTGGTAATTAAC +
Preference number: 3 (lower is better)
Translates to: IKGQEQRPLVIHRQGQAGTWDLS*RPVVIN
Trigger: GTTAATTACCACAGGCCTCAAACTCAGGTCCCATGT...ACCAGCTTGGCCCTGTCTGTGGATGACAAGAGGCCTCTGCTCTTGACCCTTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp GATATAGACAGCACAGTCAAGAACTCACCACGGCCATaGCTACCTACACAGGATAAAGCCAGCAGGACCAGC +
Preference number: 3 (lower is better)
Translates to: DIDSTVKNSPRP*LPTQDKASRTS
Trigger: GCTGGTCCTGCTGGCTTTATCCTGTGTAGGTAGTCATGGCCGTGGTGAGTTCTTGACTGTGCTGTCTATATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp GTCCCATCCAGTACACAAAGAACGGCAGGCTCTTACTaGTTCAGGAGTGAGGATGCCCAGAGAAAAGGAACA +
Preference number: 3 (lower is better)
Translates to: VPSSTQRTAGSY*FRSEDAQRKGT
Trigger: TGTTCCTTTTCTCTGGGCATCCTCACTCCTGAAGCAGTAAGAGCCTGCCGTTCTTTGTGTACTGGATGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp CTTCAGAAGGCTCCCAGAAGCCTTCTACTTCTGCCTTaGTTCAGTCATTACCATACGGAGTCAGGAAGTGCC +
Preference number: 3 (lower is better)
Translates to: LQKAPRSLLLLP*FSHYHTESGSA
Trigger: GGCACTTCCTGACTCCGTATGGTAATGACTGAATCAAGGCAGAAGTAGAAGGCTTCTGGGAGCCTTCTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp TACACAAAGAACGGCAGGCTCTTACTGCTTCAGGAGTaGGGATGCCCAGAGAAAAGGAACATCAACGGCTTT +
Preference number: 3 (lower is better)
Translates to: YTKNGRLLLLQE*GCPEKRNINGF
Trigger: AAAGCCGTTGATGTTCCTTTTCTCTGGGCATCCTCACTCCTGAAGCAGTAAGAGCCTGCCGTTCTTTGTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp GGCGGCTGGCATCAGAAGGCTCTGCCTCAGCATACTTaGAGTAGGCCTATTCAATGGAATGAAGGCATAAAT +
Preference number: 3 (lower is better)
Translates to: GGWHQKALPQHT*SRPIQWNEGIN
Trigger: ATTTATGCCTTCATTCCATTGAATAGGCCTACTTCAAGTATGCTGAGGCAGAGCCTTCTGATGCCAGCCGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp GACCTCTTCAGAAGGCTCCCAGAAGCCTTCTACTTCTaGCTTGATTCAGTCATTACCATACGGAGTCAGGAA +
Preference number: 3 (lower is better)
Translates to: DLFRRLPEAFYF*LDSVITIRSQE
Trigger: TTCCTGACTCCGTATGGTAATGACTGAATCAAGGCAGAAGTAGAAGGCTTCTGGGAGCCTTCTGAAGAGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CAA 90 bp ACTTCTGCCTTGATTCAGTCATTACCATACGGAGTCAGGAAGTGCCTGGGCACCCTCAGGATCCATAATTaGAGACATCCGGAGACTAAA +
Preference number: 3 (lower is better)
Translates to: TSALIQSLPYGVRKCLGTLRIHN*RHPETK
Trigger: TTTAGTCTCCGGATGTCTCAAATTATGGATCCTGAG...GGTGCCCAGGCACTTCCTGACTCCGTATGGTAATGACTGAATCAAGGCAGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR-3UTR CAA 90 bp ATGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTGCTCAGAACTGCCTTTCGCACAGACGGCAGCTTaGGTATCAGATCTGGGTTCT +
Preference number: 3 (lower is better)
Translates to: MLTLRKGTFIVSCSELPFAQTAA*VSDLGS
Trigger: AGAACCCAGATCTGATACCAAAGCTGCCGTCTGTGC...GAAAGGCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp ACTTGGCAGCCATTAGGTCAACTCAAACTCACTATGTaGCACTGCAAATGTTCCCTTCCAGTCCTCTTGCAC +
Preference number: 3 (lower is better)
Translates to: TWQPLGQLKLTM*HCKCSLPVLLH
Trigger: GTGCAAGAGGACTGGAAGGGAACATTTGCAGTGTCACATAGTGAGTTTGAGTTGACCTAATGGCTGCCAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CCA 72 bp TACTGTTCTTTTGCTAAAGGACACGTAATGCCACGCTaGCTTCTGAACACTCATGTCTGTACCCATGGACCA +
Preference number: 3 (lower is better)
Translates to: YCSFAKGHVMPR*LLNTHVCTHGP
Trigger: TGGTCCATGGGTACAGACATGAGTGTTCAGAAGCCAGCGTGGCATTACGTGTCCTTTAGCAAAAGAACAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp ATGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTaGTCAGAACTGCCTTTCCAGCTTCACACAGCAGCA +
Preference number: 3 (lower is better)
Translates to: MLTLRKGTFIVS*SELPFQLHTAA
Trigger: TGCTGCTGTGTGAAGCTGGAAAGGCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp AGTTTCTTTATCTGTAAAATGGATGCAAGAATCGCCTaGCACAGCCTAGTGCTAGGCTTTGGTATCATCCCA +
Preference number: 3 (lower is better)
Translates to: SFFICKMDARIA*HSLVLGFGIIP
Trigger: TGGGATGATACCAAAGCCTAGCACTAGGCTGTGGCAGGCGATTCTTGCATCCATTTTACAGATAAAGAAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR GCA 72 bp ATAGGCACAGGAGACTGCTTTACACAGTCTTTACACTaGTTTACACTGCACAGAAGACCCTGTTTACAGACA +
Preference number: 3 (lower is better)
Translates to: IGTGDCFTQSLH*FTLHRRPCLQT
Trigger: TGTCTGTAAACAGGGTCTTCTGTGCAGTGTAAAGCAGTGTAAAGACTGTGTAAAGCAGTCTCCTGTGCCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR TCA 72 bp TGCAGGTCAGAAAAGGACAGCAAGATGTTTCTAGAGTaGGATACCGTTTCACCCATGGAATTAACAGACTTC +
Preference number: 3 (lower is better)
Translates to: CRSEKDSKMFLE*DTVSPMELTDF
Trigger: GAAGTCTGTTAATTCCATGGGTGAAACGGTATCTCACTCTAGAAACATCTTGCTGTCCTTTTCTGACCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR GCA 90 bp GCAGGGCATGGCGGCCTGCGCCAGCGCTGTGTGAAAAGGCACCAGATGGTTTGTTTTTCAGTGAGGGGGTaGTGTCCCGTCGGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: AGHGGLRQRCVKRHQMVCFSVRG*CPVGSL
Trigger: CAGGGACCCGACGGGACAGCACCCCCTCACTGAAAA...ACAAACCATCTGGTGCCTTTTCACACAGCGCTGGCGCAGGCCGCCATGCCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CCA 90 bp AGCAAGACTACAGCATCACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTGTGCAGAGGAAGGCGTaGCACTCGAGGCTCTCGTTC +
Preference number: 4 (lower is better)
Translates to: SKTTASPNTTQSPSRPYPVQRKA*HSRLSF
Trigger: GAACGAGAGCCTCGAGTGCCACGCCTTCCTCTGCAC...AGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTGATGCTGTAGTCTTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR TCA 90 bp TACTCGGCCCCGAGGAAGCAGAGCTTGAGGAGCCCCAACTTTCCTGAAAGCCACCCAGTGTCCAGGACTTaGGGGTTTGTCCGGGACTGC +
Preference number: 4 (lower is better)
Translates to: YSAPRKQSLRSPNFPESHPVSRT*GFVRDC
Trigger: GCAGTCCCGGACAAACCCTCAAGTCCTGGACACTGG...GTGGCTTTCAGGAAAGTTGGGGCTCCTCAAGCTCTGCTTCCTCGGGGCCGAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CCA 90 bp GGTGGCAGCACAGACGGCAGCTTTGGTATCAGATCTGGGTTCTGTTCTCAACTCCCGCCCAGCTCTGCTTaGCCAGACTGGGGCTCCGGA +
Preference number: 4 (lower is better)
Translates to: GGSTDGSFGIRSGFCSQLPPSSA*PDWGSG
Trigger: TCCGGAGCCCCAGTCTGGCCAAGCAGAGCTGGGCGG...GAGTTGAGAACAGAACCCAGATCTGATACCAAAGCTGCCGTCTGTGCTGCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp GAGAGCCTCAGTTACTCGGCCCCGAGGAAGCAGAGCTaGAGGAGCCCCAACTTTCCTGAAAGCCACGTCCCA +
Preference number: 4 (lower is better)
Translates to: ESLSYSAPRKQS*RSPNFPESHVP
Trigger: TGGGACGTGGCTTTCAGGAAAGTTGGGGCTCCTCAAGCTCTGCTTCCTCGGGGCCGAGTAACTGAGGCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp GGCGTGGGCTGGGAGGTGGCAGCACAGACGGCAGCTTaGGTATCAGATCTGGGTTCTGTTCTCAACTCCACC +
Preference number: 4 (lower is better)
Translates to: GVGWEVAAQTAA*VSDLGSVLNST
Trigger: GGTGGAGTTGAGAACAGAACCCAGATCTGATACCAAAGCTGCCGTCTGTGCTGCCACCTCCCAGCCCACGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp CATGTCTGTACCCATGGACCAGCGCTCTTCTTACCCTaGGCCAGCATGGCTTCTCTCCACAGTGGGCAGCCG +
Preference number: 4 (lower is better)
Translates to: HVCTHGPALFLP*ASMASLHSGQP
Trigger: CGGCTGCCCACTGTGGAGAGAAGCCATGCTGGCCAAGGGTAAGAAGAGCGCTGGTCCATGGGTACAGACATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR GCA 90 bp TGCATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATTTGAGACATCCGGAGAGTTCTCTGGCAACTTaGGGTGCCGGCCGCCCGCCC +
Preference number: 4 (lower is better)
Translates to: CMKEQTAALRIHNLRHPESSLAT*GAGRPP
Trigger: GGGCGGGCGGCCGGCACCGCAAGTTGCCAGAGAACT...CTCCGGATGTCTCAAATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR GCA 90 bp TACTCGGCCCCGAGGAAGCAGAGCTTGAGGAGCCCCAACTTTCCTGAAAGCCACTTGAGTGTCACCTTCTaGAGCTTCTTCCCGCTGGCC +
Preference number: 4 (lower is better)
Translates to: YSAPRKQSLRSPNFPESHLSVTF*SFFPLA
Trigger: GGCCAGCGGGAAGAAGCTGCAGAAGGTGACACTCAA...GTGGCTTTCAGGAAAGTTGGGGCTCCTCAAGCTCTGCTTCCTCGGGGCCGAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CCA 90 bp GGTGGCAGCACAGACGGCAGCTTTGGTATCAGATCTGGGTTCTGTTCTCAACTCTCTGCTTGGCCAGACTaGGGCTCCGGATTAGCGCGC +
Preference number: 4 (lower is better)
Translates to: GGSTDGSFGIRSGFCSQLSAWPD*GSGLAR
Trigger: GCGCGCTAATCCGGAGCCCCAGTCTGGCCAAGCAGA...GAGTTGAGAACAGAACCCAGATCTGATACCAAAGCTGCCGTCTGTGCTGCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp AGTGAGGATGCCCAGAGAAAAGGAACATCAACGGCTTaGGTCATTGTCCTGACGCCCACAGCAGGAGGGGGC +
Preference number: 4 (lower is better)
Translates to: SEDAQRKGTSTA*VIVLTPTAGGG
Trigger: GCCCCCTCCTGCTGTGGGCGTCAGGACAATGACCAAAGCCGTTGATGTTCCTTTTCTCTGGGCATCCTCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR GCA 90 bp CCTCTGGGAGTAAGGAAGACCCAGCACACTACAACTTGTGCCTGCTGGGAAGTGGGGTTTGTCCGGGACTaGGCCAGCCTTGAAAATGCT +
Preference number: 4 (lower is better)
Translates to: PLGVRKTQHTTTCACWEVGFVRD*ASLENA
Trigger: AGCATTTTCAAGGCTGGCGCAGTCCCGGACAAACCC...CACTTCCCAGCAGGCACAAGTTGTAGTGTGCTGGGTCTTCCTTACTCCCAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CCA 90 bp CCTCTGGGAGTAAGGAAGACCCAGCACACTACAACTTGTGCCTGCTGGGAAGTGGCTTGTCCCAGTCGGTaGGCGATAAGCACTGTGCAT +
Preference number: 4 (lower is better)
Translates to: PLGVRKTQHTTTCACWEVACPSR*AISTVH
Trigger: ATGCACAGTGCTTATCGCCCACCGACTGGGACAAGC...CACTTCCCAGCAGGCACAAGTTGTAGTGTGCTGGGTCTTCCTTACTCCCAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR GCA 90 bp TGCATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATTTGAGACATCCGGAGAGACGACGCTGTTGTTaGCCAAGACCTGAGGCCGTG +
Preference number: 4 (lower is better)
Translates to: CMKEQTAALRIHNLRHPERRRCC*PRPEAV
Trigger: CACGGCCTCAGGTCTTGGGCAACAACAGCGTCGTCT...CTCCGGATGTCTCAAATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp CACACCAATGCTCCTCAGAAGCCGCCACCCTGCCCTTaGTTACCAGCAATACTCCAAGTGATGCTCACACTC +
Preference number: 4 (lower is better)
Translates to: HTNAPQKPPPCP*LPAILQVMLTL
Trigger: GAGTGTGAGCATCACTTGGAGTATTGCTGGTAACAAAGGGCAGGGTGGCGGCTTCTGAGGAGCATTGGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp GGCCACCTCAGGACACTGAACACATGGGACCTGAGTTaGAGGCCTGTGGTAATTAACCTCTACGATCCCCAC +
Preference number: 4 (lower is better)
Translates to: GHLRTLNTWDLS*RPVVINLYDPH
Trigger: GTGGGGATCGTAGAGGTTAATTACCACAGGCCTCAAACTCAGGTCCCATGTGTTCAGTGTCCTGAGGTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR TCA 90 bp CACAAGCGATGGAAAGATGTTGTTAGTTTGGCTGAGATTCAGGATGCCAGAGCCCCCGGGGTGACACCTTaGGTGTCACCTTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: HKRWKDVVSLAEIQDARAPGVTP*VSPSAA
Trigger: AGCTGCAGAAGGTGACACTCAAGGTGTCACCCCGGG...GGCTCTGGCATCCTGAATCTCAGCCAAACTAACAACATCTTTCCATCGCTTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR TCA 90 bp TGCATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATTTGAGACATCCGGAGATGGATGTCCTGTGCTaGCAGTCCAGTGTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: CMKEQTAALRIHNLRHPEMDVLC*QSSVQD
Trigger: GTCCTGGACACTGGACTGTCAGCACAGGACATCCAT...CTCCGGATGTCTCAAATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp TGCTCAGAACTGCCTTTCCAGCTTCACACAGCAGCATaGGCAGCAGGCACAGGAAGCAAGACTACAGCATCA +
Preference number: 4 (lower is better)
Translates to: CSELPFQLHTAA*AAGTGSKTTAS
Trigger: TGATGCTGTAGTCTTGCTTCCTGTGCCTGCTGCCAATGCTGCTGTGTGAAGCTGGAAAGGCAGTTCTGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp AAGGATCAGGGAACACTGGGAAGAGGAGGCGCGCTGTaGTCTAGACGGGATATAGACAGCACAGTCAAGAAC +
Preference number: 4 (lower is better)
Translates to: KDQGTLGRGGAL*SRRDIDSTVKN
Trigger: GTTCTTGACTGTGCTGTCTATATCCCGTCTAGACAACAGCGCGCCTCCTCTTCCCAGTGTTCCCTGATCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR GCA 90 bp ATTAAGGGTCAAGAGCAGAGGCCTCTTGTCATCCACAGACAGGGCCAAGCTGGTCTTGATCAATGCCACTaGTGTCAGGCTTGTCCCAGT +
Preference number: 4 (lower is better)
Translates to: IKGQEQRPLVIHRQGQAGLDQCH*CQACPS
Trigger: ACTGGGACAAGCCTGACAGCAGTGGCATTGATCAAG...ACCAGCTTGGCCCTGTCTGTGGATGACAAGAGGCCTCTGCTCTTGACCCTTAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CCA 90 bp ATGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTGCTCAGAACTGCCTTTCGGGCCACTTTCCGCTTaGTGCAGAGGAAGGCGTGGC +
Preference number: 4 (lower is better)
Translates to: MLTLRKGTFIVSCSELPFGPLSA*CRGRRG
Trigger: GCCACGCCTTCCTCTGCACCAAGCGGAAAGTGGCCC...GAAAGGCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CCA 90 bp AGCTTTGGTATCAGATCTGGGTTCTGTTCTCAACTCCACCCCTCAACACGTGTGGCAACTTTGAAGGCTTaGGCTACAGTCAGGGTGACG +
Preference number: 4 (lower is better)
Translates to: SFGIRSGFCSQLHPSTRVATLKA*ATVRVT
Trigger: CGTCACCCTGACTGTAGCCCAAGCCTTCAAAGTTGC...CACACGTGTTGAGGGGTGGAGTTGAGAACAGAACCCAGATCTGATACCAAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp ACCAGCTTTCACAAGCGATGGAAAGATGTTGTTAGTTaGGCTGAGATTCAGGATGCCAGAGCCCACGGGACC +
Preference number: 4 (lower is better)
Translates to: TSFHKRWKDVVS*AEIQDARAHGT
Trigger: GGTCCCGTGGGCTCTGGCATCCTGAATCTCAGCCAAACTAACAACATCTTTCCATCGCTTGTGAAAGCTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR GCA 90 bp GGTGGCAGCACAGACGGCAGCTTTGGTATCAGATCTGGGTTCTGTTCTCAACTCGCATCTTGTCTGCAGTaGAGTAGGAGATCCTGTAAA +
Preference number: 4 (lower is better)
Translates to: GGSTDGSFGIRSGFCSQLASCLQ*SRRSCK
Trigger: TTTACAGGATCTCCTACTGCACTGCAGACAAGATGC...GAGTTGAGAACAGAACCCAGATCTGATACCAAAGCTGCCGTCTGTGCTGCCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR GCA 90 bp TCACTATGCCTGTTATGCATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATGCGAACACCTTGTCGTaGATCTTGTCTGCAGTGCAG +
Preference number: 4 (lower is better)
Translates to: SLCLLCMKEQTAALRIHNANTLS*ILSAVQ
Trigger: CTGCACTGCAGACAAGATGCACGACAAGGTGTTCGC...ATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCATAACAGGCATAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR GCA 90 bp ATTAAGGGTCAAGAGCAGAGGCCTCTTGTCATCCACAGACAGGGCCAAGCTGGTTCTTCCTTGGACACCTaGCAAAACTCAAAGGCAACT +
Preference number: 4 (lower is better)
Translates to: IKGQEQRPLVIHRQGQAGSSLDT*QNSKAT
Trigger: AGTTGCCTTTGAGTTTTGGCAGGTGTCCAAGGAAGA...ACCAGCTTGGCCCTGTCTGTGGATGACAAGAGGCCTCTGCTCTTGACCCTTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CCA 90 bp AGCTTTGGTATCAGATCTGGGTTCTGTTCTCAACTCCACCCCTCAACACGTGTGACGTCTCCTCCTTCCTaGTTGGCTTTCTCCCTTTTC +
Preference number: 4 (lower is better)
Translates to: SFGIRSGFCSQLHPSTRVTSPPS*LAFSLF
Trigger: GAAAAGGGAGAAAGCCAACCAGGAAGGAGGAGACGT...CACACGTGTTGAGGGGTGGAGTTGAGAACAGAACCCAGATCTGATACCAAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp TACCTCTTCCTGAATGTAAGCCTGAGGTCGGTCACCTaGCTGATCTTTCCTGTCCCTCAGATATCCCAGAGA +
Preference number: 4 (lower is better)
Translates to: YLFLNVSLRSVT*LIFPVPQISQR
Trigger: TCTCTGGGATATCTGAGGGACAGGAAAGATCAGCAAGGTGACCGACCTCAGGCTTACATTCAGGAAGAGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR GCA 90 bp TCACTATGCCTGTTATGCATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATGTCGTGCATCTTGTCTaGAGTGCAGTAGGAGATCCT +
Preference number: 4 (lower is better)
Translates to: SLCLLCMKEQTAALRIHNVVHLV*SAVGDP
Trigger: AGGATCTCCTACTGCACTGCAGACAAGATGCACGAC...ATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCATAACAGGCATAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp ATGAAAGAGCAGACGGCTGCGCTCAGGATCCATAATTaGAGACATCCGGAGACTAAAGGCGTTGGCCAAATT +
Preference number: 4 (lower is better)
Translates to: MKEQTAALRIHN*RHPETKGVGQI
Trigger: AATTTGGCCAACGCCTTTAGTCTCCGGATGTCTCAAATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp CCCACTACTGGTGCAGAGGCAGAAATAAGCTTTGGATaGAGATACCCCGGGGTTCAATTTCCAGACTTACCT +
Preference number: 4 (lower is better)
Translates to: PTTGAEAEISFG*RYPGVQFPDLP
Trigger: AGGTAAGTCTGGAAATTGAACCCCGGGGTATCTCAATCCAAAGCTTATTTCTGCCTCTGCACCAGTAGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp TCTTCAGAAGGCTCCCAGAAGCCTTCTACTTCTGCCTaGATTCAGTCATTACCATACGGAGTCAGGAAGTGC +
Preference number: 4 (lower is better)
Translates to: SSEGSQKPSTSA*IQSLPYGVRKC
Trigger: GCACTTCCTGACTCCGTATGGTAATGACTGAATCAAGGCAGAAGTAGAAGGCTTCTGGGAGCCTTCTGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR TCA 90 bp AGCTTTGGTATCAGATCTGGGTTCTGTTCTCAACTCCACCCCTCAACACGTGTGAAGACGTCATCATCTTaGTCAATGCCACTGCTGTCA +
Preference number: 4 (lower is better)
Translates to: SFGIRSGFCSQLHPSTRVKTSSS*SMPLLS
Trigger: TGACAGCAGTGGCATTGATCAAGATGATGACGTCTT...CACACGTGTTGAGGGGTGGAGTTGAGAACAGAACCCAGATCTGATACCAAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CCA 90 bp CACAAGCGATGGAAAGATGTTGTTAGTTTGGCTGAGATTCAGGATGCCAGAGCCTCTCTTTCTCTTCCTTaGACACCTGCCAAAACTCAA +
Preference number: 4 (lower is better)
Translates to: HKRWKDVVSLAEIQDARASLSLP*TPAKTQ
Trigger: TTGAGTTTTGGCAGGTGTCCAAGGAAGAGAAAGAGA...GGCTCTGGCATCCTGAATCTCAGCCAAACTAACAACATCTTTCCATCGCTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp ATTAACCTCTACGATCCCCACAAAGGCAGATATGACTaGGCAGCCATTAGGTCAACTCAAACTCACTATGTG +
Preference number: 4 (lower is better)
Translates to: INLYDPHKGRYD*AAIRSTQTHYV
Trigger: CACATAGTGAGTTTGAGTTGACCTAATGGCTGCCAAGTCATATCTGCCTTTGTGGGGATCGTAGAGGTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
3UTR CAA 72 bp TTGGCATTGAAGACCTACTCTGCAGGAATTCAGACCTaGTACCACAAACCTTGTCAAAACTCCATAGTTAGA +
Preference number: 4 (lower is better)
Translates to: LALKTYSAGIQT*YHKPCQNSIVR
Trigger: TCTAACTATGGAGTTTTGACAAGGTTTGTGGTACAAGGTCTGAATTCCTGCAGAGTAGGTCTTCAATGCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS GCA 90 bp GTCCAGTTCTCTGGCAACTTGCGGTGCCGGCCGCCCGCCCAGCTCTaGTTGGCCAGACTGGGGCTCCGGATTAGCGCGCGCCCCGCCGAC +
Preference number: 5 (lower is better)
Translates to: VQFSGNLRCRPPAQL*LARLGLRISARPAD
Trigger: GTCGGCGGGGCGCGCGCTAATCCGGAGCCCCAGTCTGGCCAAGCAGAGCTGGGCGGGCGGCCGGCACCGCAAGTTGCCAGAGAACTGGAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp CAGGAAGCAAGACTACAGCATCACCCAACACCACACAGTCCCCCTCGCGCCCGTCAGTTCTCTGGCAACTaGCGGTGCCGGCCGCCCGCC +
Preference number: 5 (lower is better)
Translates to: QEARLQHHPTPHSPPRARQFSGN*RCRPPA
Trigger: GGCGGGCGGCCGGCACCGCAAGTTGCCAGAGAACTG...ACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTGATGCTGTAGTCTTGCTTCCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp GTCATTGTCCTGACGCCCACAGCAGGAGGGGGCACTGGCTCCAGGAGGCCAGGCTCCAGTGTCCAGGACTaGAGGGTTTGTCCGGGACTG +
Preference number: 5 (lower is better)
Translates to: VIVLTPTAGGGTGSRRPGSSVQD*RVCPGL
Trigger: CAGTCCCGGACAAACCCTCAAGTCCTGGACACTGGA...GCCTGGCCTCCTGGAGCCAGTGCCCCCTCCTGCTGTGGGCGTCAGGACAATGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS GCA 90 bp CTTCCCGCTGGCCTTGGCTGTAGCTACGATCCTCTTGACAGCAGCTaGAGACAGCTCCTCGCCCTTGGGCCGCTCCACCAGCGTCATACC +
Preference number: 5 (lower is better)
Translates to: LPAGLGCSYDPLDSS*RQLLALGPLHQRHT
Trigger: GGTATGACGCTGGTGGAGCGGCCCAAGGGCGAGGAGCTGTCTGCAGCTGCTGTCAAGAGGATCGTAGCTACAGCCAAGGCCAGCGGGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp AGCAAGACTACAGCATCACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTCCAGGACTTGAGGGTTaGTCCGGGACTGCGCCAGCC +
Preference number: 5 (lower is better)
Translates to: SKTTASPNTTQSPSRPYPPGLEG*SGTAPA
Trigger: GGCTGGCGCAGTCCCGGACAAACCCTCAAGTCCTGG...AGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTGATGCTGTAGTCTTGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp AGCAAGACTACAGCATCACCCAACACCACACAGTCCCCCTCGCGCCCGTACCCTCCCCGGGGTGACACCTaGAGTGTCACCTTCTGCAGC +
Preference number: 5 (lower is better)
Translates to: SKTTASPNTTQSPSRPYPPRGDT*SVTFCS
Trigger: GCTGCAGAAGGTGACACTCAAGGTGTCACCCCGGGG...AGGGTACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTGATGCTGTAGTCTTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp CAGGAAGCAAGACTACAGCATCACCCAACACCACACAGTCCCCCTCGCGCCCGTCCACTGCTGTCAGGCTaGTCCCAGTCGGTGGGCGAT +
Preference number: 5 (lower is better)
Translates to: QEARLQHHPTPHSPPRARPLLSG*SQSVGD
Trigger: ATCGCCCACCGACTGGGACAAGCCTGACAGCAGTGG...ACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTGATGCTGTAGTCTTGCTTCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp ATTAAGGGTCAAGAGCAGAGGCCTCTTGTCATCCACAGACAGGGCCAAGCTGGTGACAGCTCCTCGCCCTaGGGCCGCTCCACCAGCGTC +
Preference number: 5 (lower is better)
Translates to: IKGQEQRPLVIHRQGQAGDSSSP*GRSTSV
Trigger: GACGCTGGTGGAGCGGCCCAAGGGCGAGGAGCTGTC...ACCAGCTTGGCCCTGTCTGTGGATGACAAGAGGCCTCTGCTCTTGACCCTTAAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS TCA 90 bp GATGAGCTGGCTAGTGAGGCTGTCGGTCAGGATGATCCCCCGGGGTaGCACCTTGAGTGTCACCTTCTGCAGCTTCTTCCCGCTGGCCTT +
Preference number: 5 (lower is better)
Translates to: DELASEAVGQDDPPG*HLECHLLQLLPAGL
Trigger: AAGGCCAGCGGGAAGAAGCTGCAGAAGGTGACACTCAAGGTGTCACCCCGGGGGATCATCCTGACCGACAGCCTCACTAGCCAGCTCATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS TCA 90 bp AGGCCGTCATCCAGCTCCCAGACGACGCTGTTGTTGCCCAAGACCTaGGGCCGTGGTGTCTCGTCCACGTTGTTGGTATTAGCGCTGACT +
Preference number: 5 (lower is better)
Translates to: RPSSSSQTTLLLPKT*GRGVSSTLLVLALT
Trigger: AGTCAGCGCTAATACCAACAACGTGGACGAGACACCACGGCCTCAGGTCTTGGGCAACAACAGCGTCGTCTGGGAGCTGGATGACGGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS GCA 90 bp ATGCTTCGTCCAGGCCGTCATCCAGCTCCCAGACGACGCTGTTGTTaGCCAAGACCTGAGGCCGTGGTGTCTCGTCCACGTTGTTGGTAT +
Preference number: 5 (lower is better)
Translates to: MLRPGRHPAPRRRCC*PRPEAVVSRPRCWY
Trigger: ATACCAACAACGTGGACGAGACACCACGGCCTCAGGTCTTGGGCAACAACAGCGTCGTCTGGGAGCTGGATGACGGCCTGGACGAAGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp CAGGAAGCAAGACTACAGCATCACCCAACACCACACAGTCCCCCTCGCGCCCGTTCTCCTCCTTCCTGGTaGGCTTTCTCCCTTTTCTCT +
Preference number: 5 (lower is better)
Translates to: QEARLQHHPTPHSPPRARSPPSW*AFSLFS
Trigger: AGAGAAAAGGGAGAAAGCCAACCAGGAAGGAGGAGA...ACGGGCGCGAGGGGGACTGTGTGGTGTTGGGTGATGCTGTAGTCTTGCTTCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp ATGCTCACACTCAGAAAGGGAACATTTATTGTTTCCTGCTCAGAACTGCCTTTCCCCGCCCAGCTCTGCTaGGCCAGACTGGGGCTCCGG +
Preference number: 5 (lower is better)
Translates to: MLTLRKGTFIVSCSELPFPAQLC*ARLGLR
Trigger: CCGGAGCCCCAGTCTGGCCAAGCAGAGCTGGGCGGG...GAAAGGCAGTTCTGAGCAGGAAACAATAAATGTTCCCTTTCTGAGTGTGAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp AGCTTTGGTATCAGATCTGGGTTCTGTTCTCAACTCCACCCCTCAACACGTGTGTGGGCCACTTTCCGCTaGGTGCAGAGGAAGGCGTGG +
Preference number: 5 (lower is better)
Translates to: SFGIRSGFCSQLHPSTRVWATFR*VQRKAW
Trigger: CCACGCCTTCCTCTGCACCAAGCGGAAAGTGGCCCA...CACACGTGTTGAGGGGTGGAGTTGAGAACAGAACCCAGATCTGATACCAAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp GGTGGCAGCACAGACGGCAGCTTTGGTATCAGATCTGGGTTCTGTTCTCAACTCGGCAACTTTGAAGGCTaGGGCTACAGTCAGGGTGAC +
Preference number: 5 (lower is better)
Translates to: GGSTDGSFGIRSGFCSQLGNFEG*GYSQGD
Trigger: GTCACCCTGACTGTAGCCCAAGCCTTCAAAGTTGCC...GAGTTGAGAACAGAACCCAGATCTGATACCAAAGCTGCCGTCTGTGCTGCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CCA 90 bp CATCATCTTGATCAATGCCACTGCTGTCAGGCTTGTCCCAGTCGGTaGGCGATAAGCACTGTGCATAATGGATGTCCTGTGCTGACAGTC +
Preference number: 5 (lower is better)
Translates to: HHLDQCHCCQACPSR*AISTVHNGCPVLTV
Trigger: GACTGTCAGCACAGGACATCCATTATGCACAGTGCTTATCGCCCACCGACTGGGACAAGCCTGACAGCAGTGGCATTGATCAAGATGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp GCCACCCTCTGCTTCTGTCCCCTTTTACACAAAGCCACACATCTTGAATTCGAGGTAGCTACGATCCTCTaGACAGCAGCTGCAGACAGC +
Preference number: 5 (lower is better)
Translates to: ATLCFCPLLHKATHLEFEVATIL*TAAADS
Trigger: GCTGTCTGCAGCTGCTGTCAAGAGGATCGTAGCTAC...CTCGAATTCAAGATGTGTGGCTTTGTGTAAAAGGGGACAGAAGCAGAGGGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp GGTGGCAGCACAGACGGCAGCTTTGGTATCAGATCTGGGTTCTGTTCTCAACTCAACTCAAAGGCAACTTaGAAGGCTTGGGCTACAGTC +
Preference number: 5 (lower is better)
Translates to: GGSTDGSFGIRSGFCSQLNSKAT*KAWATV
Trigger: GACTGTAGCCCAAGCCTTCAAAGTTGCCTTTGAGTT...GAGTTGAGAACAGAACCCAGATCTGATACCAAAGCTGCCGTCTGTGCTGCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS-3UTR CAA 90 bp CACAAGCGATGGAAAGATGTTGTTAGTTTGGCTGAGATTCAGGATGCCAGAGCCGTCATACCAAGGTACTaGAGGCTGAAAACCATGCCC +
Preference number: 5 (lower is better)
Translates to: HKRWKDVVSLAEIQDARAVIPRY*RLKTMP
Trigger: GGGCATGGTTTTCAGCCTCAAGTACCTTGGTATGAC...GGCTCTGGCATCCTGAATCTCAGCCAAACTAACAACATCTTTCCATCGCTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 72 bp GGCAACTTGCGGTGCCGGCCGCCCGCCCAGCTCTGCTaGGCCAGACTGGGGCTCCGGATTAGCGCGCGCCCC +
Preference number: 6 (lower is better)
Translates to: GNLRCRPPAQLC*ARLGLRISARP
Trigger: GGGGCGCGCGCTAATCCGGAGCCCCAGTCTGGCCAAGCAGAGCTGGGCGGGCGGCCGGCACCGCAAGTTGCC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS GCA 72 bp TCTGGCAACTTGCGGTGCCGGCCGCCCGCCCAGCTCTaGTTGGCCAGACTGGGGCTCCGGATTAGCGCGCGC +
Preference number: 6 (lower is better)
Translates to: SGNLRCRPPAQL*LARLGLRISAR
Trigger: GCGCGCGCTAATCCGGAGCCCCAGTCTGGCCAAGCAGAGCTGGGCGGGCGGCCGGCACCGCAAGTTGCCAGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CCA 72 bp CTCCAGCAGTGTCTCCCGCGTGTCCGTCCAGTTCTCTaGCAACTTGCGGTGCCGGCCGCCCGCCCAGCTCTG +
Preference number: 6 (lower is better)
Translates to: LQQCLPRVRPVL*QLAVPAARPAL
Trigger: CAGAGCTGGGCGGGCGGCCGGCACCGCAAGTTGCCAGAGAACTGGACGGACACGCGGGAGACACTGCTGGAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CCA 72 bp GCTTGGGCCACTTTCCGCTTGGTGCAGAGGAAGGCGTaGCACTCGAGGCTCTCGTTCTGCTGGCTCTGGGCG +
Preference number: 6 (lower is better)
Translates to: AWATFRLVQRKA*HSRLSFCWLWA
Trigger: CGCCCAGAGCCAGCAGAACGAGAGCCTCGAGTGCCACGCCTTCCTCTGCACCAAGCGGAAAGTGGCCCAAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS GCA 72 bp GGCCTTGGCTGTAGCTACGATCCTCTTGACAGCAGCTaGAGACAGCTCCTCGCCCTTGGGCCGCTCCACCAG +
Preference number: 6 (lower is better)
Translates to: GLGCSYDPLDSS*RQLLALGPLHQ
Trigger: CTGGTGGAGCGGCCCAAGGGCGAGGAGCTGTCTGCAGCTGCTGTCAAGAGGATCGTAGCTACAGCCAAGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS GCA 72 bp CCAGGCCGTCATCCAGCTCCCAGACGACGCTGTTGTTaGCCAAGACCTGAGGCCGTGGTGTCTCGTCCACGT +
Preference number: 6 (lower is better)
Translates to: PGRHPAPRRRCC*PRPEAVVSRPR
Trigger: ACGTGGACGAGACACCACGGCCTCAGGTCTTGGGCAACAACAGCGTCGTCTGGGAGCTGGATGACGGCCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 72 bp GCTACAGTCAGGGTGACGGCTTGGGCCACTTTCCGCTaGGTGCAGAGGAAGGCGTGGCACTCGAGGCTCTCG +
Preference number: 6 (lower is better)
Translates to: ATVRVTAWATFR*VQRKAWHSRLS
Trigger: CGAGAGCCTCGAGTGCCACGCCTTCCTCTGCACCAAGCGGAAAGTGGCCCAAGCCGTCACCCTGACTGTAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 90 bp AAGGCTTGGGCTACAGTCAGGGTGACGGCTTGGGCCACTTTCCGCTaGGTGCAGAGGAAGGCGTGGCACTCGAGGCTCTCGTTCTGCTGG +
Preference number: 6 (lower is better)
Translates to: KAWATVRVTAWATFR*VQRKAWHSRLSFCW
Trigger: CCAGCAGAACGAGAGCCTCGAGTGCCACGCCTTCCTCTGCACCAAGCGGAAAGTGGCCCAAGCCGTCACCCTGACTGTAGCCCAAGCCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 72 bp AGGCTGTCGGTCAGGATGATCCCCCGGGGTGACACCTaGAGTGTCACCTTCTGCAGCTTCTTCCCGCTGGCC +
Preference number: 6 (lower is better)
Translates to: RLSVRMIPRGDT*SVTFCSFFPLA
Trigger: GGCCAGCGGGAAGAAGCTGCAGAAGGTGACACTCAAGGTGTCACCCCGGGGGATCATCCTGACCGACAGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 72 bp TTCTTCCCGCTGGCCTTGGCTGTAGCTACGATCCTCTaGACAGCAGCTGCAGACAGCTCCTCGCCCTTGGGC +
Preference number: 6 (lower is better)
Translates to: FFPLALAVATIL*TAAADSSSPLG
Trigger: GCCCAAGGGCGAGGAGCTGTCTGCAGCTGCTGTCAAGAGGATCGTAGCTACAGCCAAGGCCAGCGGGAAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 90 bp TGGCTAGTGAGGCTGTCGGTCAGGATGATCCCCCGGGGTGACACCTaGAGTGTCACCTTCTGCAGCTTCTTCCCGCTGGCCTTGGCTGTA +
Preference number: 6 (lower is better)
Translates to: WLVRLSVRMIPRGDT*SVTFCSFFPLALAV
Trigger: TACAGCCAAGGCCAGCGGGAAGAAGCTGCAGAAGGTGACACTCAAGGTGTCACCCCGGGGGATCATCCTGACCGACAGCCTCACTAGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS TCA 72 bp GCTAGTGAGGCTGTCGGTCAGGATGATCCCCCGGGGTaGCACCTTGAGTGTCACCTTCTGCAGCTTCTTCCC +
Preference number: 6 (lower is better)
Translates to: ASEAVGQDDPPG*HLECHLLQLLP
Trigger: GGGAAGAAGCTGCAGAAGGTGACACTCAAGGTGTCACCCCGGGGGATCATCCTGACCGACAGCCTCACTAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 72 bp ATCCTCTTGACAGCAGCTGCAGACAGCTCCTCGCCCTaGGGCCGCTCCACCAGCGTCATACCAAGGTACTTG +
Preference number: 6 (lower is better)
Translates to: ILLTAAADSSSP*GRSTSVIPRYL
Trigger: CAAGTACCTTGGTATGACGCTGGTGGAGCGGCCCAAGGGCGAGGAGCTGTCTGCAGCTGCTGTCAAGAGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 90 bp GTAGCTACGATCCTCTTGACAGCAGCTGCAGACAGCTCCTCGCCCTaGGGCCGCTCCACCAGCGTCATACCAAGGTACTTGAGGCTGAAA +
Preference number: 6 (lower is better)
Translates to: VATILLTAAADSSSP*GRSTSVIPRYLRLK
Trigger: TTTCAGCCTCAAGTACCTTGGTATGACGCTGGTGGAGCGGCCCAAGGGCGAGGAGCTGTCTGCAGCTGCTGTCAAGAGGATCGTAGCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CCA 72 bp CCAGACGACGCTGTTGTTGCCCAAGACCTGAGGCCGTaGTGTCTCGTCCACGTTGTTGGTATTAGCGCTGAC +
Preference number: 6 (lower is better)
Translates to: PDDAVVAQDLRP*CLVHVVGISAD
Trigger: GTCAGCGCTAATACCAACAACGTGGACGAGACACCACGGCCTCAGGTCTTGGGCAACAACAGCGTCGTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 90 bp AATGGATGTCCTGTGCTGACAGTCCAGTGTCCAGGACTTGAGGGTTaGTCCGGGACTGCGCCAGCCTTGAAAATGCTTCGTCCAGGCCGT +
Preference number: 6 (lower is better)
Translates to: NGCPVLTVQCPGLEG*SGTAPALKMLRPGR
Trigger: ACGGCCTGGACGAAGCATTTTCAAGGCTGGCGCAGTCCCGGACAAACCCTCAAGTCCTGGACACTGGACTGTCAGCACAGGACATCCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS TCA 72 bp TCCAGCTCCCAGACGACGCTGTTGTTGCCCAAGACCTaGGGCCGTGGTGTCTCGTCCACGTTGTTGGTATTA +
Preference number: 6 (lower is better)
Translates to: SSSQTTLLLPKT*GRGVSSTLLVL
Trigger: TAATACCAACAACGTGGACGAGACACCACGGCCTCAGGTCTTGGGCAACAACAGCGTCGTCTGGGAGCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS TCA 72 bp TGGATGTCCTGTGCTGACAGTCCAGTGTCCAGGACTTaGGGGTTTGTCCGGGACTGCGCCAGCCTTGAAAAT +
Preference number: 6 (lower is better)
Translates to: WMSCADSPVSRT*GFVRDCASLEN
Trigger: ATTTTCAAGGCTGGCGCAGTCCCGGACAAACCCTCAAGTCCTGGACACTGGACTGTCAGCACAGGACATCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 72 bp TTGAGTGTCACCTTCTGCAGCTTCTTCCCGCTGGCCTaGGCTGTAGCTACGATCCTCTTGACAGCAGCTGCA +
Preference number: 6 (lower is better)
Translates to: LSVTFCSFFPLA*AVATILLTAAA
Trigger: TGCAGCTGCTGTCAAGAGGATCGTAGCTACAGCCAAGGCCAGCGGGAAGAAGCTGCAGAAGGTGACACTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 90 bp CTCTTCCTTGGACACCTGCCAAAACTCAAAGGCAACTTTGAAGGCTaGGGCTACAGTCAGGGTGACGGCTTGGGCCACTTTCCGCTTGGT +
Preference number: 6 (lower is better)
Translates to: LFLGHLPKLKGNFEG*GYSQGDGLGHFPLG
Trigger: ACCAAGCGGAAAGTGGCCCAAGCCGTCACCCTGACTGTAGCCCAAGCCTTCAAAGTTGCCTTTGAGTTTTGGCAGGTGTCCAAGGAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CCA 72 bp GATCAATGCCACTGCTGTCAGGCTTGTCCCAGTCGGTaGGCGATAAGCACTGTGCATAATGGATGTCCTGTG +
Preference number: 6 (lower is better)
Translates to: DQCHCCQACPSR*AISTVHNGCPV
Trigger: CACAGGACATCCATTATGCACAGTGCTTATCGCCCACCGACTGGGACAAGCCTGACAGCAGTGGCATTGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS CAA 72 bp GGACACCTGCCAAAACTCAAAGGCAACTTTGAAGGCTaGGGCTACAGTCAGGGTGACGGCTTGGGCCACTTT +
Preference number: 6 (lower is better)
Translates to: GHLPKLKGNFEG*GYSQGDGLGHF
Trigger: AAAGTGGCCCAAGCCGTCACCCTGACTGTAGCCCAAGCCTTCAAAGTTGCCTTTGAGTTTTGGCAGGTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS GCA 72 bp GGCGATGTAGGCGAACACCTTGTCGTGCATCTTGTCTaGAGTGCAGTAGGAGATCCTGTAAATGGACACGTT +
Preference number: 6 (lower is better)
Translates to: GDVGEHLVVHLV*SAVGDPVNGHV
Trigger: AACGTGTCCATTTACAGGATCTCCTACTGCACTGCAGACAAGATGCACGACAAGGTGTTCGCCTACATCGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8
CDS GCA 72 bp TGTAGGCGAACACCTTGTCGTGCATCTTGTCTGCAGTaGAGTAGGAGATCCTGTAAATGGACACGTTCTCGA +
Preference number: 6 (lower is better)
Translates to: CRRTPCRASCLQ*SRRSCKWTRSR
Trigger: TCGAGAACGTGTCCATTTACAGGATCTCCTACTGCACTGCAGACAAGATGCACGACAAGGTGTTCGCCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037828.8