Pregenerated sensors for LDLRAD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070877Ensembl transcript IDs: ENSMUST00000094916.5
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGGCCGGTACCACTGGGAGATGGCAAAAGTTTCTTCCCACCCTTaGGGTCCAGGGTTTGGTGCTCTGGTGAAAGGATCTGGGTGTCAG | + |
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Preference number: 1 (lower is better) Translates to: RGRYHWEMAKVSSHP*GPGFGALVKGSGCQ Trigger: CTGACACCCAGATCCTTTCACCAGAGCACCAAACCCTGGACCGCAAGGGTGGGAAGAAACTTTTGCCATCTCCCAGTGGTACCGGCCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| 3UTR TCA 90 bp | CAAAAGTTTCTTCCCACCCTTGCGGTCCAGGGTTTGGTGCTCTGGTaGAAGGATCTGGGTGTCAGCTTCCATGCTATGGAGGGAGGCTCA | + |
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Preference number: 1 (lower is better) Translates to: QKFLPTLAVQGLVLW*KDLGVSFHAMEGGS Trigger: TGAGCCTCCCTCCATAGCATGGAAGCTGACACCCAGATCCTTTCACCAGAGCACCAAACCCTGGACCGCAAGGGTGGGAAGAAACTTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| 3UTR CCA 90 bp | CTGGGAGATGGCAAAAGTTTCTTCCCACCCTTGCGGTCCAGGGTTTaGTGCTCTGGTGAAAGGATCTGGGTGTCAGCTTCCATGCTATGG | + |
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Preference number: 1 (lower is better) Translates to: LGDGKSFFPPLRSRV*CSGERIWVSASMLW Trigger: CCATAGCATGGAAGCTGACACCCAGATCCTTTCACCAGAGCACCAAACCCTGGACCGCAAGGGTGGGAAGAAACTTTTGCCATCTCCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| 3UTR CAA 90 bp | CAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTTCTTCCCACCCTaGCGGTCCAGGGTTTGGTGCTCTGGTGAAAGGATCTGGGTGTCA | + |
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Preference number: 2 (lower is better) Translates to: QGPVPLGDGKSFFPP*RSRVWCSGERIWVS Trigger: TGACACCCAGATCCTTTCACCAGAGCACCAAACCCTGGACCGCAAGGGTGGGAAGAAACTTTTGCCATCTCCCAGTGGTACCGGCCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| 3UTR-3UTR TCA 90 bp | AAGACAATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAGGTTTGGTGCTCTGGTaGAAGGATCTGGGTGTCAGC | + |
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Preference number: 2 (lower is better) Translates to: KTIPVQRQQGPVPLGDGKGLVLW*KDLGVS Trigger: GCTGACACCCAGATCCTTTCACCAGAGCACCAAACC...TTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAATTGTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| 3UTR-3UTR CCA 90 bp | CAATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTTTGCGGTCCAGGGTTTaGTGCTCTGGTGAAAGGATC | + |
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Preference number: 2 (lower is better) Translates to: QFLFRDNRGRYHWEMAKVLRSRV*CSGERI Trigger: GATCCTTTCACCAGAGCACCAAACCCTGGACCGCAA...AACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAATTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| 3UTR GCA 72 bp | TACCACTGGGAGATGGCAAAAGTTTCTTCCCACCCTTaGGGTCCAGGGTTTGGTGCTCTGGTGAAAGGATCT | + |
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Preference number: 3 (lower is better) Translates to: YHWEMAKVSSHP*GPGFGALVKGS Trigger: AGATCCTTTCACCAGAGCACCAAACCCTGGACCGCAAGGGTGGGAAGAAACTTTTGCCATCTCCCAGTGGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR CCA 90 bp | GAGATGGCAAAAGTTTCTTCCCACCCTTGCGGTCCAGGGTTTGGTGCTCTGGTGGCAAGGCAGCGAGCATaGCCAGCAGGAGCAGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: EMAKVSSHPCGPGFGALVARQRA*PAGAAG Trigger: GCCTGCTGCTCCTGCTGGCCATGCTCGCTGCCTTGC...CACCAGAGCACCAAACCCTGGACCGCAAGGGTGGGAAGAAACTTTTGCCATCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR CCA 90 bp | GAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTTCTTCCCACCCTTAAGCTGGGGAGGCTCTaGGGCACATCTCGGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: ETTGAGTTGRWQKFLPTLKLGRL*GTSRHR Trigger: CCTGTGCCGAGATGTGCCCCAGAGCCTCCCCAGCTT...AAGGGTGGGAAGAAACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR TCA 90 bp | ATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTTCGCAGGCTCCACGGCGTaGGCAGCAGAGTGGACCACA | + |
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Preference number: 4 (lower is better) Translates to: IPVQRQQGPVPLGDGKSFAGSTA*AAEWTT Trigger: TGTGGTCCACTCTGCTGCTCACGCCGTGGAGCCTGC...GAAACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR CCA 90 bp | GAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTTCTTCCCACCCTTGCACACAGCATGGGCTaGGATGCAGTGCCTTCGGTC | + |
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Preference number: 4 (lower is better) Translates to: ETTGAGTTGRWQKFLPTLAHSMG*DAVPSV Trigger: GACCGAAGGCACTGCATCCCAGCCCATGCTGTGTGC...AAGGGTGGGAAGAAACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR TCA 90 bp | CAATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTGCCTCGTCCTCACCATaGGGACAGGTGCGGATGCCA | + |
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Preference number: 4 (lower is better) Translates to: QFLFRDNRGRYHWEMAKVASSSP*GQVRMP Trigger: TGGCATCCGCACCTGTCCTCATGGTGAGGACGAGGC...AACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR CCA 90 bp | ATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTTCCTCTGGTGTGCGGGGTaGATGTCCGAGGATGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: IPVQRQQGPVPLGDGKSFLWCAG*MSEDGG Trigger: GCCACCATCCTCGGACATCCACCCCGCACACCAGAG...GAAACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR CCA 90 bp | AAAGACAATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAGCAGGAGTGAGTCTCTaGTGTGCGGGGTGGATGTCC | + |
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Preference number: 4 (lower is better) Translates to: KDNSCSETTGAGTTGRWQAGVSL*CAGWMS Trigger: GGACATCCACCCCGCACACCAGAGACTCACTCCTGC...TTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAATTGTCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR CCA 90 bp | CAATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTCTGGGTCTCCACAGGTaGTCAGGAGGAAGCTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: QFLFRDNRGRYHWEMAKVLGLHR*SGGSWG Trigger: TCCCCAGCTTCCTCCTGACCACCTGTGGAGACCCAG...AACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR TCA 90 bp | GAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTTCTTCCCACCCTTACAGGAGTACTCATCTaGCCAGTCAGAGCAGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: ETTGAGTTGRWQKFLPTLTGVLI*PVRAVL Trigger: CAGCACTGCTCTGACTGGTCAGATGAGTACTCCTGT...AAGGGTGGGAAGAAACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR GCA 90 bp | AAAGACAATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAGTGAGTCTCTGGTGTaGGGGGTGGATGTCCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: KDNSCSETTGAGTTGRWQSESLV*GVDVRG Trigger: TCCTCGGACATCCACCCCGCACACCAGAGACTCACT...TTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAATTGTCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR GCA 90 bp | AAGACAATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAACACCATGAGGACAGGTaGGGATGCCATCGCACACAG | + |
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Preference number: 4 (lower is better) Translates to: KTIPVQRQQGPVPLGDGKHHEDR*GCHRTQ Trigger: CTGTGTGCGATGGCATCCGCACCTGTCCTCATGGTG...TTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAATTGTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR CCA 90 bp | CAATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTCCATCGCACACAGCATaGGCTGGGATGCAGTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: QFLFRDNRGRYHWEMAKVPSHTA*AGMQCL Trigger: AAGGCACTGCATCCCAGCCCATGCTGTGTGCGATGG...AACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAATTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| 3UTR CAA 72 bp | GTACCACTGGGAGATGGCAAAAGTTTCTTCCCACCCTaGCGGTCCAGGGTTTGGTGCTCTGGTGAAAGGATC | + |
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Preference number: 4 (lower is better) Translates to: VPLGDGKSFFPP*RSRVWCSGERI Trigger: GATCCTTTCACCAGAGCACCAAACCCTGGACCGCAAGGGTGGGAAGAAACTTTTGCCATCTCCCAGTGGTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR GCA 90 bp | GAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTTCTTCCCACCCTTGTTACTCTCGGCATCTaGCTGGCCAAGAAACCAGAA | + |
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Preference number: 4 (lower is better) Translates to: ETTGAGTTGRWQKFLPTLVTLGI*LAKKPE Trigger: TTCTGGTTTCTTGGCCAGGCAGATGCCGAGAGTAAC...AAGGGTGGGAAGAAACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR CCA 90 bp | TTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTTCTCTCTCGGCATCTGCCTaGCCAAGAAACCAGAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: FLFRDNRGRYHWEMAKVSLSASA*PRNQKQ Trigger: CTGCTTCTGGTTTCTTGGCCAGGCAGATGCCGAGAG...AGAAACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR CCA 90 bp | AAAGACAATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAGTAGATCCAGGAGTCTaGGTCTCCACAGGTGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: KDNSCSETTGAGTTGRWQVDPGV*VSTGGQ Trigger: CTGACCACCTGTGGAGACCCAGACTCCTGGATCTAC...TTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAATTGTCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR CCA 90 bp | GAGATGGCAAAAGTTTCTTCCCACCCTTGCGGTCCAGGGTTTGGTGCTCTGGTGAAACCAGAAGCAGGCTaGGCAAAATTCTGCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: EMAKVSSHPCGPGFGALVKPEAG*AKFCSL Trigger: GAGAGAGCAGAATTTTGCCCAGCCTGCTTCTGGTTT...CACCAGAGCACCAAACCCTGGACCGCAAGGGTGGGAAGAAACTTTTGCCATCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR TCA 90 bp | AAGACAATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAATCACATTTCTGGTCTaGGTAGATCCAGGAGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: KTIPVQRQQGPVPLGDGKITFLV*VDPGVW Trigger: CCAGACTCCTGGATCTACTCAGACCAGAAATGTGAT...TTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAATTGTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS-3UTR TCA 90 bp | CAATTCCTGTTCAGAGACAACAGGGGCCGGTACCACTGGGAGATGGCAAAAGTTAGTCTCCACAGTTGTTaGCGCCATCACATTTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: QFLFRDNRGRYHWEMAKVSLHSC*RHHISG Trigger: ACCAGAAATGTGATGGCGTCAACAACTGTGGAGACT...AACTTTTGCCATCTCCCAGTGGTACCGGCCCCTGTTGTCTCTGAACAGGAATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS TCA 90 bp | GGCCAGCAGGAGCAGCAGGCCGACCGAGAGGCAGGCTCCACGGCGTaGGCAGCAGAGTGGACCACAGCCTTCATCTCCAGGGCGGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: GQQEQQADREAGSTA*AAEWTTAFISRAGF Trigger: AAAGCCCGCCCTGGAGATGAAGGCTGTGGTCCACTCTGCTGCTCACGCCGTGGAGCCTGCCTCTCGGTCGGCCTGCTGCTCCTGCTGGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS CCA 90 bp | CGCAGGAGTGAGTCTCTGGTGTGCGGGGTGGATGTCCGAGGATGGTaGCCACAGCAAGCAAGGCAGCGAGCATGGCCAGCAGGAGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: RRSESLVCGVDVRGW*PQQARQRAWPAGAA Trigger: TGCTGCTCCTGCTGGCCATGCTCGCTGCCTTGCTTGCTGTGGCCACCATCCTCGGACATCCACCCCGCACACCAGAGACTCACTCCTGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS CCA 90 bp | TCACGCAGGAGTGAGTCTCTGGTGTGCGGGGTGGATGTCCGAGGATaGTGGCCACAGCAAGCAAGGCAGCGAGCATGGCCAGCAGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: SRRSESLVCGVDVRG*WPQQARQRAWPAGA Trigger: TGCTCCTGCTGGCCATGCTCGCTGCCTTGCTTGCTGTGGCCACCATCCTCGGACATCCACCCCGCACACCAGAGACTCACTCCTGCGTGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS TCA 90 bp | TCGTGGCACAAGAACCCTGTCCTGTTGGCTAGTGTCACGCAGGAGTaGGTCTCTGGTGTGCGGGGTGGATGTCCGAGGATGGTGGCCACA | + |
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Preference number: 5 (lower is better) Translates to: SWHKNPVLLASVTQE*VSGVRGGCPRMVAT Trigger: TGTGGCCACCATCCTCGGACATCCACCCCGCACACCAGAGACTCACTCCTGCGTGACACTAGCCAACAGGACAGGGTTCTTGTGCCACGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS GCA 90 bp | CATGAGGACAGGTGCGGATGCCATCGCACACAGCATGGGCTGGGATaGAGTGCCTTCGGTCGTGGCACAAGAACCCTGTCCTGTTGGCTA | + |
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Preference number: 5 (lower is better) Translates to: HEDRCGCHRTQHGLG*SAFGRGTRTLSCWL Trigger: TAGCCAACAGGACAGGGTTCTTGTGCCACGACCGAAGGCACTGCATCCCAGCCCATGCTGTGTGCGATGGCATCCGCACCTGTCCTCATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS CCA 90 bp | CTGGGATGCAGTGCCTTCGGTCGTGGCACAAGAACCCTGTCCTGTTaGCTAGTGTCACGCAGGAGTGAGTCTCTGGTGTGCGGGGTGGAT | + |
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Preference number: 5 (lower is better) Translates to: LGCSAFGRGTRTLSC*LVSRRSESLVCGVD Trigger: ATCCACCCCGCACACCAGAGACTCACTCCTGCGTGACACTAGCCAACAGGACAGGGTTCTTGTGCCACGACCGAAGGCACTGCATCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS CCA 90 bp | CTCACCATGAGGACAGGTGCGGATGCCATCGCACACAGCATGGGCTaGGATGCAGTGCCTTCGGTCGTGGCACAAGAACCCTGTCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: LTMRTGADAIAHSMG*DAVPSVVAQEPCPV Trigger: AACAGGACAGGGTTCTTGTGCCACGACCGAAGGCACTGCATCCCAGCCCATGCTGTGTGCGATGGCATCCGCACCTGTCCTCATGGTGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS GCA 90 bp | TCCAGGGCGGGCTTTCCTTCTAGTGGTGATGTTACTCTCGGCATCTaGCTGGCCAAGAAACCAGAAGCAGGCTGGGCAAAATTCTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: SRAGFPSSGDVTLGI*LAKKPEAGWAKFCS Trigger: AGAGCAGAATTTTGCCCAGCCTGCTTCTGGTTTCTTGGCCAGGCAGATGCCGAGAGTAACATCACCACTAGAAGGAAAGCCCGCCCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS TCA 72 bp | CCCGGCACAGATCCCTCGGGACACAGCTGCAGTACTTaGACACAGTTGGCGAGCAGCGCCACCACCCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: PGTDPSGHSCST*TQLASSATTQG Trigger: GCCCTGGGTGGTGGCGCTGCTCGCCAACTGTGTTCAAGTACTGCAGCTGTGTCCCGAGGGATCTGTGCCGGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS CAA 72 bp | TCCCGGCACAGATCCCTCGGGACACAGCTGCAGTACTaGAACACAGTTGGCGAGCAGCGCCACCACCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: SRHRSLGTQLQY*NTVGEQRHHPG Trigger: CCCTGGGTGGTGGCGCTGCTCGCCAACTGTGTTCAAGTACTGCAGCTGTGTCCCGAGGGATCTGTGCCGGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS GCA 72 bp | AGGTGCGGATGCCATCGCACACAGCATGGGCTGGGATaGAGTGCCTTCGGTCGTGGCACAAGAACCCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: RCGCHRTQHGLG*SAFGRGTRTLS Trigger: GGACAGGGTTCTTGTGCCACGACCGAAGGCACTGCATCCCAGCCCATGCTGTGTGCGATGGCATCCGCACCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS CCA 72 bp | AGTGAGTCTCTGGTGTGCGGGGTGGATGTCCGAGGATaGTGGCCACAGCAAGCAAGGCAGCGAGCATGGCCA | + |
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Preference number: 6 (lower is better) Translates to: SESLVCGVDVRG*WPQQARQRAWP Trigger: TGGCCATGCTCGCTGCCTTGCTTGCTGTGGCCACCATCCTCGGACATCCACCCCGCACACCAGAGACTCACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS CCA 72 bp | AGGACAGGTGCGGATGCCATCGCACACAGCATGGGCTaGGATGCAGTGCCTTCGGTCGTGGCACAAGAACCC | + |
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Preference number: 6 (lower is better) Translates to: RTGADAIAHSMG*DAVPSVVAQEP Trigger: GGGTTCTTGTGCCACGACCGAAGGCACTGCATCCCAGCCCATGCTGTGTGCGATGGCATCCGCACCTGTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS GCA 72 bp | CCAGGACAGGAGTACTCATCTGACCAGTCAGAGCAGTaGTGCACGCTGTCCCGGCACAGATCCCTCGGGACA | + |
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Preference number: 6 (lower is better) Translates to: PGQEYSSDQSEQ*CTLSRHRSLGT Trigger: TGTCCCGAGGGATCTGTGCCGGGACAGCGTGCAGCACTGCTCTGACTGGTCAGATGAGTACTCCTGTCCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS CCA 72 bp | CACACAGCATGGGCTGGGATGCAGTGCCTTCGGTCGTaGCACAAGAACCCTGTCCTGTTGGCTAGTGTCACG | + |
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Preference number: 6 (lower is better) Translates to: HTAWAGMQCLRS*HKNPVLLASVT Trigger: CGTGACACTAGCCAACAGGACAGGGTTCTTGTGCCACGACCGAAGGCACTGCATCCCAGCCCATGCTGTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS CCA 72 bp | AGTGCCTTCGGTCGTGGCACAAGAACCCTGTCCTGTTaGCTAGTGTCACGCAGGAGTGAGTCTCTGGTGTGC | + |
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Preference number: 6 (lower is better) Translates to: SAFGRGTRTLSC*LVSRRSESLVC Trigger: GCACACCAGAGACTCACTCCTGCGTGACACTAGCCAACAGGACAGGGTTCTTGTGCCACGACCGAAGGCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS CCA 72 bp | CTCGGCATCTGCCTGGCCAAGAAACCAGAAGCAGGCTaGGCAAAATTCTGCTCTCTCACAGCCCACGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: LGICLAKKPEAG*AKFCSLTAHAH Trigger: ATGAGCGTGGGCTGTGAGAGAGCAGAATTTTGCCCAGCCTGCTTCTGGTTTCTTGGCCAGGCAGATGCCGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS TCA 72 bp | ACAGGGCGGGCACGTAGTCACTGGGCTCAGCTCATCTaGGCAGTCTCCACAGTTGTTGACGCCATCACATTT | + |
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Preference number: 6 (lower is better) Translates to: TGRARSHWAQLI*AVSTVVDAITF Trigger: AAATGTGATGGCGTCAACAACTGTGGAGACTGCTCAGATGAGCTGAGCCCAGTGACTACGTGCCCGCCCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS TCA 72 bp | GTCTCCACAGTTGTTGACGCCATCACATTTCTGGTCTaGGTAGATCCAGGAGTCTGGGTCTCCACAGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: VSTVVDAITFLV*VDPGVWVSTGG Trigger: ACCACCTGTGGAGACCCAGACTCCTGGATCTACTCAGACCAGAAATGTGATGGCGTCAACAACTGTGGAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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| CDS CCA 72 bp | TTCCTTCTAGTGGTGATGTTACTCTCGGCATCTGCCTaGCCAAGAAACCAGAAGCAGGCTGGGCAAAATTCT | + |
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Preference number: 6 (lower is better) Translates to: FLLVVMLLSASA*PRNQKQAGQNS Trigger: AGAATTTTGCCCAGCCTGCTTCTGGTTTCTTGGCCAGGCAGATGCCGAGAGTAACATCACCACTAGAAGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094916.5 |
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