Pregenerated sensors for LDHC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030851Ensembl transcript IDs: ENSMUST00000014545.11, ENSMUST00000126004.3, ENSMUST00000148565.8, ENSMUST00000210585.2, ENSMUST00000211784.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGATCAGGCATCTGTCACACGGTCGAAGGTGGCGAGTTTATAACTaGAGATCCTTCTGCATATTCCAGAGTGTGTCCGCACTCTTCTTG | + |
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Preference number: 1 (lower is better) Translates to: VIRHLSHGRRWRVYN*RSFCIFQSVSALFL Trigger: CAAGAAGAGTGCGGACACACTCTGGAATATGCAGAAGGATCTGCAGTTATAAACTCGCCACCTTCGACCGTGTGACAGATGCCTGATCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211784.2 |
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| 3UTR CCA 90 bp | GCCGTGATCAGTGATGTGATCAGGCATCTGTCACACGGTCGAAGGTaGCGAGTTTATAACTGCAGATCCTTCTGCATATTCCAGAGTGTG | + |
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Preference number: 1 (lower is better) Translates to: AVISDVIRHLSHGRR*RVYNCRSFCIFQSV Trigger: CACACTCTGGAATATGCAGAAGGATCTGCAGTTATAAACTCGCCACCTTCGACCGTGTGACAGATGCCTGATCACATCACTGATCACGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211784.2 |
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| 3UTR-3UTR TCA 90 bp | GGGGAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACGACTGCCGTGATCAGTaGTGTGATCAGGCATCTGTC | + |
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Preference number: 2 (lower is better) Translates to: GEGDAFGINLSSLEIDLNDCRDQ*CDQASV Trigger: GACAGATGCCTGATCACATCACTGATCACGGCAGTC...GTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| 3UTR-3UTR TCA 90 bp | AGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTGACTGCCGTGATCAGTaGTGTGATCAGGCATCTGTC | + |
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Preference number: 2 (lower is better) Translates to: REMPLALIFLALRLILTGDCRDQ*CDQASV Trigger: GACAGATGCCTGATCACATCACTGATCACGGCAGTC...ACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| 3UTR-3UTR TCA 90 bp | GCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTCCAAAAGACTGCCGTGATCAGTaGTGTGATCAGGCATCTGTC | + |
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Preference number: 2 (lower is better) Translates to: AFGINLSSLEIDLNRFPKDCRDQ*CDQASV Trigger: GACAGATGCCTGATCACATCACTGATCACGGCAGTC...TTTTGGAAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGAACTGCAGATCCTTCTaGATATTCCAGAGTGTGTCC | + |
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Preference number: 2 (lower is better) Translates to: EGDAFGINLSSLEIDLNRNCRSF*IFQSVS Trigger: GGACACACTCTGGAATATGCAGAAGGATCTGCAGTT...CCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211784.2 |
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| 3UTR-3UTR GCA 90 bp | GGGGAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACTGGCGAGTTTATAACTaGAGATCCTTCTGCATATTC | + |
|
Preference number: 2 (lower is better) Translates to: GEGDAFGINLSSLEIDLNWRVYN*RSFCIF Trigger: GAATATGCAGAAGGATCTGCAGTTATAAACTCGCCA...GTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTCCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211784.2 |
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| 3UTR-3UTR CCA 90 bp | AAAAAGGGGGAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATAACTTTGTTATGATGTaGAAACACTTTCAGTGGGAC | + |
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Preference number: 2 (lower is better) Translates to: KKGEGDAFGINLSSLEIDNFVMM*KHFQWD Trigger: GTCCCACTGAAAGTGTTTCCACATCATAACAAAGTT...ATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTCCCCCTTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTAACTTTGTTATGATGTaGAAACACTTTCAGTGGGAC | + |
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Preference number: 2 (lower is better) Translates to: REMPLALIFLALRLILTGNFVMM*KHFQWD Trigger: GTCCCACTGAAAGTGTTTCCACATCATAACAAAGTT...ACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| 3UTR TCA 72 bp | ATGTGGAAACACTTTCAGTGGGACTGCCGTGATCAGTaGTGTGATCAGGCATCTGTCACACGGTCGAAGGTG | + |
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Preference number: 3 (lower is better) Translates to: MWKHFQWDCRDQ*CDQASVTRSKV Trigger: CACCTTCGACCGTGTGACAGATGCCTGATCACATCACTGATCACGGCAGTCCCACTGAAAGTGTTTCCACAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| 3UTR CCA 72 bp | AGTGATGTGATCAGGCATCTGTCACACGGTCGAAGGTaGCGAGTTTATAACTGCAGATCCTTCTGCATATTC | + |
|
Preference number: 3 (lower is better) Translates to: SDVIRHLSHGRR*RVYNCRSFCIF Trigger: GAATATGCAGAAGGATCTGCAGTTATAAACTCGCCACCTTCGACCGTGTGACAGATGCCTGATCACATCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211784.2 |
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| CDS-3UTR CCA 90 bp | GGCGAGTTTATAACTGCAGATCCTTCTGCATATTCCAGAGTGTGTCCGCACTCTATAGCGACATTACGTTaGAGCAGGTCAAGGCGAGTT | + |
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Preference number: 4 (lower is better) Translates to: GEFITADPSAYSRVCPHSIATLR*SRSRRV Trigger: AACTCGCCTTGACCTGCTCCAACGTAATGTCGCTAT...AGAGTGCGGACACACTCTGGAATATGCAGAAGGATCTGCAGTTATAAACTCGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211784.2 |
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| CDS-3UTR TCA 90 bp | GAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTCTGTCCGCACTCTTCTTaGGGAGACCCTCCTCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: EMPLALIFLALRLILTGFCPHSS*GDPPPQ Trigger: CTGAGGAGGAGGGTCTCCTCAAGAAGAGTGCGGACA...GAAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 |
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| CDS-3UTR GCA 90 bp | GGGGAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACGTGCAGAAGATCCAGTaGCTCTCCCCTCAGTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: GEGDAFGINLSSLEIDLNVQKIQ*LSPQFV Trigger: AACAAACTGAGGGGAGAGGCACTGGATCTTCTGCAC...GTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR TCA 90 bp | ATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTCCAATGTCCGCACTCTTCTTaGGGAGACCCTCCTCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: MPLALIFLALRLILTGFQCPHSS*GDPPPQ Trigger: CTGAGGAGGAGGGTCTCCTCAAGAAGAGTGCGGACA...TTGGAAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 |
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| CDS-3UTR CCA 90 bp | GGGGAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACTCTTCCTTTATCCCATaGAAGCCCTTAACCAGCGTG | + |
|
Preference number: 4 (lower is better) Translates to: GEGDAFGINLSSLEIDLNSSFIP*KPLTSV Trigger: CACGCTGGTTAAGGGCTTCCATGGGATAAAGGAAGA...GTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 |
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| CDS-3UTR TCA 90 bp | GGGGAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGACACAAGGGATACTaGGGAAGACCTCTTCCTTTA | + |
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Preference number: 4 (lower is better) Translates to: GEGDAFGINLSSLEIDLNRHKGY*GRPLPL Trigger: TAAAGGAAGAGGTCTTCCTCAGTATCCCTTGTGTCT...GTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTCCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR GCA 90 bp | AGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTAGGAAAAGACTGCCGTaGAGAAGATCCAGTGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: REMPLALIFLALRLILTGRKRLP*RRSSAS Trigger: AGAGGCACTGGATCTTCTGCACGGCAGTCTTTTCCT...ACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR GCA 90 bp | GAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTCGTGCAGAAGATCCAGTaGCTCTCCCCTCAGTTTGTT | + |
|
Preference number: 4 (lower is better) Translates to: EMPLALIFLALRLILTGFVQKIQ*LSPQFV Trigger: AACAAACTGAGGGGAGAGGCACTGGATCTTCTGCAC...GAAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR GCA 90 bp | AAAAAGGGGGAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATGACTGTTTTGGACAATaGCCGGAACAATGGCTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: KKGEGDAFGINLSSLEIDDCFGQ*PEQWLS Trigger: TGAAAGCCATTGTTCCGGGCATTGTCCAAAACAGTC...ATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTCCCCCTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR GCA 90 bp | GAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGGACTGTTTTGGACAATaGCCGGAACAATGGCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: EGDAFGINLSSLEIDLNRDCFGQ*PEQWLS Trigger: TGAAAGCCATTGTTCCGGGCATTGTCCAAAACAGTC...CCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR CCA 90 bp | AGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTCTTCCTTTATCCCATaGAAGCCCTTAACCAGCGTG | + |
|
Preference number: 4 (lower is better) Translates to: REMPLALIFLALRLILTGSSFIP*KPLTSV Trigger: CACGCTGGTTAAGGGCTTCCATGGGATAAAGGAAGA...ACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 |
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| CDS-3UTR GCA 90 bp | ATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTCCAAAGGAAAAGACTGCCGTaGAGAAGATCCAGTGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: MPLALIFLALRLILTGFQRKRLP*RRSSAS Trigger: AGAGGCACTGGATCTTCTGCACGGCAGTCTTTTCCT...TTGGAAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR GCA 90 bp | GCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTCCAAAAAGGAAAAGACTGCCGTaGAGAAGATCCAGTGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: AFGINLSSLEIDLNRFPKRKRLP*RRSSAS Trigger: AGAGGCACTGGATCTTCTGCACGGCAGTCTTTTCCT...TTTTGGAAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR GCA 90 bp | AGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTAACTGCAGATCCTTCTaGATATTCCAGAGTGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: REMPLALIFLALRLILTGNCRSF*IFQSVS Trigger: GGACACACTCTGGAATATGCAGAAGGATCTGCAGTT...ACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 |
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| CDS-3UTR CCA 90 bp | GAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTCATAGCGACATTACGTTaGAGCAGGTCAAGGCGAGTT | + |
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Preference number: 4 (lower is better) Translates to: EMPLALIFLALRLILTGFIATLR*SRSRRV Trigger: AACTCGCCTTGACCTGCTCCAACGTAATGTCGCTAT...GAAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR CCA 90 bp | GGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTATAGCGACATTACGTTaGAGCAGGTCAAGGCGAGTT | + |
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Preference number: 4 (lower is better) Translates to: GDAFGINLSSLEIDLNRFIATLR*SRSRRV Trigger: AACTCGCCTTGACCTGCTCCAACGTAATGTCGCTAT...AAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR GCA 90 bp | GGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTGACTGTTTTGGACAATaGCCGGAACAATGGCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: GDAFGINLSSLEIDLNRFDCFGQ*PEQWLS Trigger: TGAAAGCCATTGTTCCGGGCATTGTCCAAAACAGTC...AAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR CCA 90 bp | GCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTCCAAAATCTTCCTTTATCCCATaGAAGCCCTGGGTTAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: AFGINLSSLEIDLNRFPKSSFIP*KPWVSD Trigger: GTCACTAACCCAGGGCTTCCATGGGATAAAGGAAGA...TTTTGGAAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211784.2 |
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| CDS-3UTR TCA 90 bp | GCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTCCAAAAAGACACAAGGGATACTaGGGAAGACCTCTTCCTTTA | + |
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Preference number: 4 (lower is better) Translates to: AFGINLSSLEIDLNRFPKRHKGY*GRPLPL Trigger: TAAAGGAAGAGGTCTTCCTCAGTATCCCTTGTGTCT...TTTTGGAAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| 3UTR CAA 72 bp | GGGAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTaGAGATTGATCTTAACAGGTTTCCAAAATTTTATT | + |
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Preference number: 4 (lower is better) Translates to: GREMPLALIFLA*RLILTGFQNFI Trigger: AATAAAATTTTGGAAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS CCA 90 bp | TGGACAATGCCCGGAACAATGGCTTTCATGATAGCGACATTACGTTaGAGCAGGTCAAGGCGAGTTTCTCCAGACACCATTCTTGCACCA | + |
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Preference number: 5 (lower is better) Translates to: WTMPGTMAFMIATLR*SRSRRVSPDTILAP Trigger: TGGTGCAAGAATGGTGTCTGGAGAAACTCGCCTTGACCTGCTCCAACGTAATGTCGCTATCATGAAAGCCATTGTTCCGGGCATTGTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000014545.11 ENSMUST00000126004.3 ENSMUST00000148565.8 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR CAA 90 bp | GGGGAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACTGGCAGCTTGTAGGGTaGACACCCAGCTTCTCCCCA | + |
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Preference number: 5 (lower is better) Translates to: GEGDAFGINLSSLEIDLNWQLVG*TPSFSP Trigger: TGGGGAGAAGCTGGGTGTCAACCCTACAAGCTGCCA...GTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000014545.11 |
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| CDS-3UTR CAA 90 bp | GAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGGTCTGTGATACCACTTaGTCCCAAGACACAAGGGAT | + |
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Preference number: 5 (lower is better) Translates to: EGDAFGINLSSLEIDLNRVCDTT*SQDTRD Trigger: ATCCCTTGTGTCTTGGGACAAAGTGGTATCACAGAC...CCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR CAA 90 bp | AAAAAGGGGGAGGGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATGTCTGTGATACCACTTaGTCCCAAGACACAAGGGAT | + |
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Preference number: 5 (lower is better) Translates to: KKGEGDAFGINLSSLEIDVCDTT*SQDTRD Trigger: ATCCCTTGTGTCTTGGGACAAAGTGGTATCACAGAC...ATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCCCTCCCCCTTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR CAA 90 bp | GGAGATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTGTCTGTGATACCACTTaGTCCCAAGACACAAGGGAT | + |
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Preference number: 5 (lower is better) Translates to: GDAFGINLSSLEIDLNRFVCDTT*SQDTRD Trigger: ATCCCTTGTGTCTTGGGACAAAGTGGTATCACAGAC...AAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCATCTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS-3UTR CAA 90 bp | ATGCCTTTGGCATTAATCTTTCTAGCCTTGAGATTGATCTTAACAGGTTTCCAATCCTCAGCGGTCATGTaGACTTTCACAAAGTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: MPLALIFLALRLILTGFQSSAVM*TFTKSV Trigger: CACAGACTTTGTGAAAGTCAACATGACCGCTGAGGA...TTGGAAACCTGTTAAGATCAATCTCAAGGCTAGAAAGATTAATGCCAAAGGCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 |
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| CDS CAA 72 bp | TCCTTCTGCATATTCCAGAGTGTGTCCGCACTCTTCTaGAGGAGACCCTCCTCCTCAGCGGTCATGTTGACT | + |
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Preference number: 6 (lower is better) Translates to: SFCIFQSVSALF*RRPSSSAVMLT Trigger: AGTCAACATGACCGCTGAGGAGGAGGGTCTCCTCAAGAAGAGTGCGGACACACTCTGGAATATGCAGAAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 |
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| CDS CAA 72 bp | GCCCGGAACAATGGCTTTCATGATAGCGACATTACGTaGGAGCAGGTCAAGGCGAGTTTCTCCAGACACCAT | + |
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Preference number: 6 (lower is better) Translates to: ARNNGFHDSDIT*EQVKASFSRHH Trigger: ATGGTGTCTGGAGAAACTCGCCTTGACCTGCTCCAACGTAATGTCGCTATCATGAAAGCCATTGTTCCGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000014545.11 ENSMUST00000126004.3 ENSMUST00000148565.8 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS CAA 90 bp | TTGGACAATGCCCGGAACAATGGCTTTCATGATAGCGACATTACGTaGGAGCAGGTCAAGGCGAGTTTCTCCAGACACCATTCTTGCACC | + |
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Preference number: 6 (lower is better) Translates to: LDNARNNGFHDSDIT*EQVKASFSRHHSCT Trigger: GGTGCAAGAATGGTGTCTGGAGAAACTCGCCTTGACCTGCTCCAACGTAATGTCGCTATCATGAAAGCCATTGTTCCGGGCATTGTCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000014545.11 ENSMUST00000126004.3 ENSMUST00000148565.8 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS CAA 90 bp | AACTGCAGATCCTTCTGCATATTCCAGAGTGTGTCCGCACTCTTCTaGAGGAGACCCTCCTCCTCAGCGGTCATGTTGACTTTCACAAAG | + |
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Preference number: 6 (lower is better) Translates to: NCRSFCIFQSVSALF*RRPSSSAVMLTFTK Trigger: CTTTGTGAAAGTCAACATGACCGCTGAGGAGGAGGGTCTCCTCAAGAAGAGTGCGGACACACTCTGGAATATGCAGAAGGATCTGCAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014545.11 ENSMUST00000210585.2 |
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| CDS CCA 72 bp | CCCGGAACAATGGCTTTCATGATAGCGACATTACGTTaGAGCAGGTCAAGGCGAGTTTCTCCAGACACCATT | + |
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Preference number: 6 (lower is better) Translates to: PGTMAFMIATLR*SRSRRVSPDTI Trigger: AATGGTGTCTGGAGAAACTCGCCTTGACCTGCTCCAACGTAATGTCGCTATCATGAAAGCCATTGTTCCGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000014545.11 ENSMUST00000126004.3 ENSMUST00000148565.8 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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| CDS CCA 72 bp | CTGAGGAAGACCTCTTCCTTTATCCCATGGAAGCCCTaGGTTAGTGACGATAATTATTTTACAGTCCGGACT | + |
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Preference number: 6 (lower is better) Translates to: LRKTSSFIPWKP*VSDDNYFTVRT Trigger: AGTCCGGACTGTAAAATAATTATCGTCACTAACCCAGGGCTTCCATGGGATAAAGGAAGAGGTCTTCCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211784.2 |
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| CDS CAA 72 bp | GTTAGTGACGATAATTATTTTACAGTCCGGACTGTTTaGGACAATGCCCGGAACAATGGCTTTCATGATAGC | + |
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Preference number: 6 (lower is better) Translates to: VSDDNYFTVRTV*DNARNNGFHDS Trigger: GCTATCATGAAAGCCATTGTTCCGGGCATTGTCCAAAACAGTCCGGACTGTAAAATAATTATCGTCACTAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000014545.11 ENSMUST00000126004.3 ENSMUST00000148565.8 ENSMUST00000210585.2 ENSMUST00000211784.2 |
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