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Pregenerated sensors for LDHAL6B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000101959

Ensembl transcript IDs: ENSMUST00000189788.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGGCACCCAGAAACTGTGAAAAAGCAAAGTCACCCAGCCTCTGGATaGTACACAACAGGAGACCTAAACAAGAGACCCTCCAGCTTTCGG +
Preference number: 1 (lower is better)
Translates to: RHPETVKKQSHPASG*YTTGDLNKRPSSFR
Trigger: CCGAAAGCTGGAGGGTCTCTTGTTTAGGTCTCCTGTTGTGTAGCATCCAGAGGCTGGGTGACTTTGCTTTTTCACAGTTTCTGGGTGCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
3UTR GCA 72 bp GAAACTGTGAAAAAGCAAAGTCACCCAGCCTCTGGATaGTACACAACAGGAGACCTAAACAAGAGACCCTCC +
Preference number: 3 (lower is better)
Translates to: ETVKKQSHPASG*YTTGDLNKRPS
Trigger: GGAGGGTCTCTTGTTTAGGTCTCCTGTTGTGTAGCATCCAGAGGCTGGGTGACTTTGCTTTTTCACAGTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS-3UTR CCA 90 bp GGAGACCTAAACAAGAGACCCTCCAGCTTTCGGAACCCCCGCTTCACCCCACACGCAATGACTTCTTTGTaGACATCGCCCCATTTCTCG +
Preference number: 4 (lower is better)
Translates to: GDLNKRPSSFRNPRFTPHAMTSL*TSPHFS
Trigger: CGAGAAATGGGGCGATGTCCACAAAGAAGTCATTGC...GTGTGGGGTGAAGCGGGGGTTCCGAAAGCTGGAGGGTCTCTTGTTTAGGTCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS-3UTR TCA 90 bp CGGCACCCAGAAACTGTGAAAAAGCAAAGTCACCCAGCCTCTGGATGCTACACACCTCAGAGTTGGCAGTaGCACGGAAATCCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: RHPETVKKQSHPASGCYTPQSWQ*HGNPCC
Trigger: GCAGCAAGGATTTCCGTGTCACTGCCAACTCTGAGG...TGTGTAGCATCCAGAGGCTGGGTGACTTTGCTTTTTCACAGTTTCTGGGTGCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS-3UTR GCA 90 bp CCTAAACAAGAGACCCTCCAGCTTTCGGAACCCCCGCTTCACCCCACACTTGGCTTTCCAAATAGTCTCTaGGCTCTTTACCATCTGGGC +
Preference number: 4 (lower is better)
Translates to: PKQETLQLSEPPLHPTLGFPNSL*ALYHLG
Trigger: GCCCAGATGGTAAAGAGCGCAGAGACTATTTGGAAA...GCCAAGTGTGGGGTGAAGCGGGGGTTCCGAAAGCTGGAGGGTCTCTTGTTTAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS-3UTR CCA 90 bp GGATGCTACACAACAGGAGACCTAAACAAGAGACCCTCCAGCTTTCGGAACCCCGTCTCATTTTTCTCTTaGCGTGCACCCGCTGTGATA +
Preference number: 4 (lower is better)
Translates to: GCYTTGDLNKRPSSFRNPVSFFS*RAPAVI
Trigger: TATCACAGCGGGTGCACGCCAAGAGAAAAATGAGAC...GGGGTTCCGAAAGCTGGAGGGTCTCTTGTTTAGGTCTCCTGTTGTGTAGCATCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS-3UTR GCA 90 bp CTACACAACAGGAGACCTAAACAAGAGACCCTCCAGCTTTCGGAACCCCCGCTTCTTCAGGATACTCTCTaGAATATCAGTTACAGACAG +
Preference number: 4 (lower is better)
Translates to: LHNRRPKQETLQLSEPPLLQDTL*NISYRQ
Trigger: CTGTCTGTAACTGATATTGCAGAGAGTATCCTGAAG...AAGCGGGGGTTCCGAAAGCTGGAGGGTCTCTTGTTTAGGTCTCCTGTTGTGTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS-3UTR TCA 90 bp CTACACAACAGGAGACCTAAACAAGAGACCCTCCAGCTTTCGGAACCCCCGCTTTCAGCTTTACCTTTATaGTATCAGATATGCCACTCT +
Preference number: 4 (lower is better)
Translates to: LHNRRPKQETLQLSEPPLSALPL*YQICHS
Trigger: AGAGTGGCATATCTGATATCATAAAGGTAAAGCTGA...AAGCGGGGGTTCCGAAAGCTGGAGGGTCTCTTGTTTAGGTCTCCTGTTGTGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS-3UTR CAA 90 bp CGGCACCCAGAAACTGTGAAAAAGCAAAGTCACCCAGCCTCTGGATGCTACACACTCCACCAGGCCCGGTaGGGAGGGACACGTTGCACC +
Preference number: 5 (lower is better)
Translates to: RHPETVKKQSHPASGCYTLHQAR*GGTRCT
Trigger: GGTGCAACGTGTCCCTCCCAACCGGGCCTGGTGGAG...TGTGTAGCATCCAGAGGCTGGGTGACTTTGCTTTTTCACAGTTTCTGGGTGCCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS TCA 90 bp GTGGACATCGCCCCATTTCTCGGGGTCTTTGCTTGTTCCTATAGCTaGATTCAGCTCTCTCAGCGGCACGCCGGCGATGTTCACACCACT +
Preference number: 5 (lower is better)
Translates to: VDIAPFLGVFACSYS*IQLSQRHAGDVHTT
Trigger: AGTGGTGTGAACATCGCCGGCGTGCCGCTGAGAGAGCTGAATTCAGCTATAGGAACAAGCAAAGACCCCGAGAAATGGGGCGATGTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS-3UTR CAA 90 bp GGAGACCTAAACAAGAGACCCTCCAGCTTTCGGAACCCCCGCTTCACCCCACACGCTATGCCAAAGCCCTaGAAATCTACCCTGGTTGTA +
Preference number: 5 (lower is better)
Translates to: GDLNKRPSSFRNPRFTPHAMPKP*KSTLVV
Trigger: TACAACCAGGGTAGATTTCAAGGGCTTTGGCATAGC...GTGTGGGGTGAAGCGGGGGTTCCGAAAGCTGGAGGGTCTCTTGTTTAGGTCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS-3UTR CAA 90 bp ACAACAGGAGACCTAAACAAGAGACCCTCCAGCTTTCGGAACCCCCGCTTCACCATCACTACCTCAGAGTaGGCAGTGACACGGAAATCC +
Preference number: 5 (lower is better)
Translates to: TTGDLNKRPSSFRNPRFTITTSE*AVTRKS
Trigger: GGATTTCCGTGTCACTGCCAACTCTGAGGTAGTGAT...GGTGAAGCGGGGGTTCCGAAAGCTGGAGGGTCTCTTGTTTAGGTCTCCTGTTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS CCA 90 bp ATATCTTTCTGGATTTTCCAAATAGTCTCTGCGCTCTTTACCATCTaGGCCTCCTCTGTAGGGCTCAGCTTTACCTTTATGATATCAGAT +
Preference number: 5 (lower is better)
Translates to: ISFWIFQIVSALFTI*ASSVGLSFTFMISD
Trigger: ATCTGATATCATAAAGGTAAAGCTGAGCCCTACAGAGGAGGCCCAGATGGTAAAGAGCGCAGAGACTATTTGGAAAATCCAGAAAGATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS TCA 72 bp CTCCACCAGGCCCGGTTGGGAGGGACACGTTGCACCTaGCTGGGCCATAGAGCTATGCCAAAGCCCTTGAAA +
Preference number: 6 (lower is better)
Translates to: LHQARLGGTRCT*LGHRAMPKPLK
Trigger: TTTCAAGGGCTTTGGCATAGCTCTATGGCCCAGTCAGGTGCAACGTGTCCCTCCCAACCGGGCCTGGTGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS GCA 72 bp ACCTTGTTGTGGAGAACGGGCTCTTCGGAGCTGATGTaGTGGATAAGTTCACCCTTCACGGTCGCCATGGAG +
Preference number: 6 (lower is better)
Translates to: TLLWRTGSSELM*WISSPFTVAME
Trigger: CTCCATGGCGACCGTGAAGGGTGAACTTATCCAGCACATCAGCTCCGAAGAGCCCGTTCTCCACAACAAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS CCA 72 bp TTGTTGTGGAGAACGGGCTCTTCGGAGCTGATGTGCTaGATAAGTTCACCCTTCACGGTCGCCATGGAGGAC +
Preference number: 6 (lower is better)
Translates to: LLWRTGSSELMC*ISSPFTVAMED
Trigger: GTCCTCCATGGCGACCGTGAAGGGTGAACTTATCCAGCACATCAGCTCCGAAGAGCCCGTTCTCCACAACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS CAA 90 bp ACAAGGCACGCTGAGGAACACCTCCTCTTTGATTCCGTAGAGACCTaGGATTTTGGTGGTAACTGGATGCGTCTTCCTGAGATTCTTCAG +
Preference number: 6 (lower is better)
Translates to: TRHAEEHLLFDSVET*DFGGNWMRLPEILQ
Trigger: CTGAAGAATCTCAGGAAGACGCATCCAGTTACCACCAAAATCCAAGGTCTCTACGGAATCAAAGAGGAGGTGTTCCTCAGCGTGCCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS CCA 72 bp TCCGCAACCATTGCCTTAAAGATGGTTACGTTTCGCTaGACTAAATTCAGGCGTGTCTCATTTTTCTCTTGG +
Preference number: 6 (lower is better)
Translates to: SATIALKMVTFR*TKFRRVSFFSW
Trigger: CCAAGAGAAAAATGAGACACGCCTGAATTTAGTCCAGCGAAACGTAACCATCTTTAAGGCAATGGTTGCGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2
CDS CCA 72 bp TTTGATTCCGTAGAGACCTTGGATTTTGGTGGTAACTaGATGCGTCTTCCTGAGATTCTTCAGGATACTCTC +
Preference number: 6 (lower is better)
Translates to: FDSVETLDFGGN*MRLPEILQDTL
Trigger: GAGAGTATCCTGAAGAATCTCAGGAAGACGCATCCAGTTACCACCAAAATCCAAGGTCTCTACGGAATCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189788.2