Pregenerated sensors for LDHA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063229Ensembl transcript IDs: ENSMUST00000005051.6, ENSMUST00000048209.16, ENSMUST00000209548.2, ENSMUST00000209984.2, ENSMUST00000210815.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCACTACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTaGGATGTTTCCCCACACCATCTCAACACCACTGTACTAACCACA | + |
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Preference number: 1 (lower is better) Translates to: PLHKYHLAAGQSCGE*DVSPHHLNTTVLTT Trigger: TGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR CCA 90 bp | CTGTACAACATTTATGCACAAGATATGCATCATGGACGTACACACTaGAGCCAGGTTATACGACTTAACTGGGAACTCGTCGGCCTAGGC | + |
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Preference number: 1 (lower is better) Translates to: LYNIYAQDMHHGRTH*SQVIRLNWELVGLG Trigger: GCCTAGGCCGACGAGTTCCCAGTTAAGTCGTATAACCTGGCTCCAGTGTGTACGTCCATGATGCATATCTTGTGCATAAATGTTGTACAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR TCA 90 bp | CAGCAGGCTCACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACCTGCAGCCTGGACAGTaGAGTGCTAGGACACGGGGA | + |
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Preference number: 2 (lower is better) Translates to: QQAHRGNRSLQLAVCLRDLQPGQ*SARTRG Trigger: TCCCCGTGTCCTAGCACTTCACTGTCCAGGCTGCAG...GTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTGAGCCTGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR GCA 90 bp | AGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTCCCCACACCGAGAAGGGTGTGGTCTaGCTAGAAGCCCTGCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: STTWQQGRAVGSEMFPHTEKGVV*LEALLQ Trigger: CTGCAGCAGGGCTTCTAGGCAGACCACACCCTTCTC...GGTGTGGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR GCA 90 bp | ACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTCCCCGGTGCAGGGCAGCAATaGAGCAGGCTCACAGGGGTA | + |
|
Preference number: 2 (lower is better) Translates to: TQVPLGSRAELWGVRCFPGAGQQ*SRLTGV Trigger: TACCCCTGTGAGCCTGCTGCATTGCTGCCCTGCACC...GGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR TCA 90 bp | AGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGTCCTGCAGCCTGGACAGTaGAGTGCTAGGACACGGGGA | + |
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Preference number: 2 (lower is better) Translates to: RGNRSLQLAVCLRDSGTVLQPGQ*SARTRG Trigger: TCCCCGTGTCCTAGCACTTCACTGTCCAGGCTGCAG...GACAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR TCA 90 bp | GGCAGAGCTGTGGGGAGTGAGATGTTTCCCCACACCATCTCAACACCACTGTACCTGCAGCCTGGACAGTaGAGTGCTAGGACACGGGGA | + |
|
Preference number: 2 (lower is better) Translates to: GRAVGSEMFPHTISTPLYLQPGQ*SARTRG Trigger: TCCCCGTGTCCTAGCACTTCACTGTCCAGGCTGCAG...GTACAGTGGTGTTGAGATGGTGTGGGGAAACATCTCACTCCCCACAGCTCTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR TCA 90 bp | ACCACTACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTCTGCAGCCTGGACAGTaGAGTGCTAGGACACGGGGA | + |
|
Preference number: 2 (lower is better) Translates to: TTTQVPLGSRAELWGVRCLQPGQ*SARTRG Trigger: TCCCCGTGTCCTAGCACTTCACTGTCCAGGCTGCAG...ACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAGTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCAGGCTCACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACGAGAAGGGTGTGGTCTaGCTAGAAGCCCTGCTGCAG | + |
|
Preference number: 2 (lower is better) Translates to: QQAHRGNRSLQLAVCLRDEKGVV*LEALLQ Trigger: CTGCAGCAGGGCTTCTAGGCAGACCACACCCTTCTC...GTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTGAGCCTGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR GCA 90 bp | ACCACTACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTGGTGCAGGGCAGCAATaGAGCAGGCTCACAGGGGTA | + |
|
Preference number: 2 (lower is better) Translates to: TTTQVPLGSRAELWGVRCGAGQQ*SRLTGV Trigger: TACCCCTGTGAGCCTGCTGCATTGCTGCCCTGCACC...ACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAGTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR GCA 90 bp | AAGCCCTGCTGCAGCCTGGACAGTGAAGTGCTAGGACACGGGGAAGACTTTAGAGGTGCAGGGCAGCAATaGAGCAGGCTCACAGGGGTA | + |
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Preference number: 2 (lower is better) Translates to: KPCCSLDSEVLGHGEDFRGAGQQ*SRLTGV Trigger: TACCCCTGTGAGCCTGCTGCATTGCTGCCCTGCACC...TCTAAAGTCTTCCCCGTGTCCTAGCACTTCACTGTCCAGGCTGCAGCAGGGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209548.2 |
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| 3UTR-3UTR GCA 90 bp | GCTCACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGGCTCTCAGCCAAGTCTaGCACAGAGAGGCCAATGGC | + |
|
Preference number: 2 (lower is better) Translates to: AHRGNRSLQLAVCLRDSGALSQV*HREANG Trigger: GCCATTGGCCTCTCTGTGGCAGACTTGGCTGAGAGC...CCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209548.2 |
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| 3UTR-3UTR GCA 90 bp | CACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGAGAAGGGTGTGGTCTaGCTAGAAGCCCTGCTGCAG | + |
|
Preference number: 2 (lower is better) Translates to: HRGNRSLQLAVCLRDSGTEKGVV*LEALLQ Trigger: CTGCAGCAGGGCTTCTAGGCAGACCACACCCTTCTC...AGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR GCA 90 bp | ACCACTACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTGAGAAGGGTGTGGTCTaGCTAGAAGCCCTGCTGCAG | + |
|
Preference number: 2 (lower is better) Translates to: TTTQVPLGSRAELWGVRCEKGVV*LEALLQ Trigger: CTGCAGCAGGGCTTCTAGGCAGACCACACCCTTCTC...ACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAGTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR GCA 90 bp | ACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTCCCCCCTAGGCATGTTTGGTaGAGGGCAGCAATGCAGCAG | + |
|
Preference number: 2 (lower is better) Translates to: TQVPLGSRAELWGVRCFPPRHVW*RAAMQQ Trigger: CTGCTGCATTGCTGCCCTGCACCAAACATGCCTAGG...GGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGT 57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR CCA 90 bp | GTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTCCCCACACCATACACAAGTACCACTTaGCAGCAGGGCAGAGCTGTG | + |
|
Preference number: 2 (lower is better) Translates to: VPLGSRAELWGVRCFPTPYTSTT*QQGRAV Trigger: CACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTA...TGGTGTGGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR GCA 90 bp | ACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTCCCCGGGGTAATCGAAGCCTaGAGTTGGCAGTGTGTCTCA | + |
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Preference number: 2 (lower is better) Translates to: TQVPLGSRAELWGVRCFPGVIEA*SWQCVS Trigger: TGAGACACACTGCCAACTGCAGGCTTCGATTACCCC...GGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR TCA 90 bp | AGATGTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGCTGCAGCCTGGACAGTaGAGTGCTAGGACACGGGGA | + |
|
Preference number: 2 (lower is better) Translates to: RCFPTPSQHHCTNHSSDELQPGQ*SARTRG Trigger: TCCCCGTGTCCTAGCACTTCACTGTCCAGGCTGCAG...CTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAACATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR GCA 90 bp | TTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGGTGAGAAGGGTGTGGTCTaGCTAGAAGCCCTGCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: FPTPSQHHCTNHSSDEKGEKGVV*LEALLQ Trigger: CTGCAGCAGGGCTTCTAGGCAGACCACACCCTTCTC...ACCCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR GCA 90 bp | GTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGTCACACCCTAGGCATGTTTGGTaGAGGGCAGCAATGCAGCAG | + |
|
Preference number: 2 (lower is better) Translates to: VIEACSWQCVSETVGLSHPRHVW*RAAMQQ Trigger: CTGCTGCATTGCTGCCCTGCACCAAACATGCCTAGG...GTGTGACAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGATCGAAGCCTGCAGTTaGCAGTGTGTCTCAGAGACA | + |
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Preference number: 2 (lower is better) Translates to: TGVIEACSWQCVSETVGLIEACS*QCVSET Trigger: TGTCTCTGAGACACACTGCCAACTGCAGGCTTCGAT...CAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR CCA 90 bp | ACCACTACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTATCGAAGCCTGCAGTTaGCAGTGTGTCTCAGAGACA | + |
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Preference number: 2 (lower is better) Translates to: TTTQVPLGSRAELWGVRCIEACS*QCVSET Trigger: TGTCTCTGAGACACACTGCCAACTGCAGGCTTCGAT...ACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAGTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR GCA 90 bp | GTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGGGGGTAATCGAAGCCTaGAGTTGGCAGTGTGTCTCA | + |
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Preference number: 2 (lower is better) Translates to: VSPHHLNTTVLTTAQTRRGVIEA*SWQCVS Trigger: TGAGACACACTGCCAACTGCAGGCTTCGATTACCCC...CCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAAC 52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR CCA 90 bp | GTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGTACACAAGTACCACTTaGCAGCAGGGCAGAGCTGTG | + |
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Preference number: 2 (lower is better) Translates to: VSPHHLNTTVLTTAQTRRYTSTT*QQGRAV Trigger: CACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTA...CCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR CAA 90 bp | ACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTCCCCCTACACAAGTACCACTaGGCAGCAGGGCAGAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: TQVPLGSRAELWGVRCFPLHKYH*AAGQSC Trigger: ACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAG...GGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR GCA 72 bp | CAGCAATGCAGCAGGCTCACAGGGGTAATCGAAGCCTaGAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTG | + |
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Preference number: 3 (lower is better) Translates to: QQCSRLTGVIEA*SWQCVSETVGL Trigger: CAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTGAGCCTGCTGCATTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR CAA 90 bp | CACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTCTACACAAGTACCACTaGGCAGCAGGGCAGAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: HRGNRSLQLAVCLRDSGTLHKYH*AAGQSC Trigger: ACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAG...AGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR CAA 90 bp | ACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGCTACACAAGTACCACTaGGCAGCAGGGCAGAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: TGVIEACSWQCVSETVGLLHKYH*AAGQSC Trigger: ACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAG...CAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR CAA 90 bp | GTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGTCACACCTACACAAGTACCACTaGGCAGCAGGGCAGAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: VIEACSWQCVSETVGLSHLHKYH*AAGQSC Trigger: ACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAG...GTGTGACAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR CAA 90 bp | GGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGTCAAATCGAAGCCTGCAGTaGGCAGTGTGTCTCAGAGAC | + |
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Preference number: 3 (lower is better) Translates to: GVIEACSWQCVSETVGLSNRSLQ*AVCLRD Trigger: GTCTCTGAGACACACTGCCAACTGCAGGCTTCGATT...TGACAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| 3UTR-3UTR CAA 90 bp | GTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGATCCGAGATTCCATTTaGTCCCAGGATACATGGGAC | + |
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Preference number: 3 (lower is better) Translates to: VSPHHLNTTVLTTAQTRRIRDSI*SQDTWD Trigger: GTCCCATGTATCCTGGGACAAAATGGAATCTCGGAT...CCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209548.2 |
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| CDS-3UTR GCA 90 bp | GTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTCCCCACACCACCACTGCTCCTTGTCTaGGTCAGTGCCCAGTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: VPLGSRAELWGVRCFPTPPLLLV*VSAQFW Trigger: CCAGAACTGGGCACTGACGCAGACAAGGAGCAGTGG...TGGTGTGGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| CDS-3UTR GCA 90 bp | AGACGAGAAGGGTGTGGTCTGCCTAGAAGCCCTGCTGCAGCCTGGACAGTGAAGGCTCTCAGCCAAGTCTaGCACAGAGAGGCCAATGGC | + |
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Preference number: 4 (lower is better) Translates to: RREGCGLPRSPAAAWTVKALSQV*HREANG Trigger: GCCATTGGCCTCTCTGTGGCAGACTTGGCTGAGAGC...CTTCACTGTCCAGGCTGCAGCAGGGCTTCTAGGCAGACCACACCCTTCTCGTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| CDS-3UTR GCA 90 bp | CAGCAGGCTCACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACCCACTGCTCCTTGTCTaGGTCAGTGCCCAGTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: QQAHRGNRSLQLAVCLRDPLLLV*VSAQFW Trigger: CCAGAACTGGGCACTGACGCAGACAAGGAGCAGTGG...GTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTGAGCCTGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| CDS-3UTR GCA 90 bp | ACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTCCCCCCACTGCTCCTTGTCTaGGTCAGTGCCCAGTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: TQVPLGSRAELWGVRCFPPLLLV*VSAQFW Trigger: CCAGAACTGGGCACTGACGCAGACAAGGAGCAGTGG...GGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGT 58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| CDS-3UTR GCA 90 bp | ACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGGCTCTCAGCCAAGTCTaGCACAGAGAGGCCAATGGC | + |
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Preference number: 4 (lower is better) Translates to: TGVIEACSWQCVSETVGLALSQV*HREANG Trigger: GCCATTGGCCTCTCTGTGGCAGACTTGGCTGAGAGC...CAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| CDS-3UTR GCA 90 bp | GTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGCCACTGCTCCTTGTCTaGGTCAGTGCCCAGTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: VSPHHLNTTVLTTAQTRRPLLLV*VSAQFW Trigger: CCAGAACTGGGCACTGACGCAGACAAGGAGCAGTGG...CCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| CDS-3UTR GCA 90 bp | TCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGGTGTGGTCTGCCTAGCTCTCAGCCAAGTCTaGCACAGAGAGGCCAATGGC | + |
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Preference number: 4 (lower is better) Translates to: SQHHCTNHSSDEKGVVCLALSQV*HREANG Trigger: GCCATTGGCCTCTCTGTGGCAGACTTGGCTGAGAGC...TAGGCAGACCACACCCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
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| CDS-3UTR TCA 90 bp | CAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGTCACACTAACCAGGTCACCACAATCAGCTGGTCCTTaGGGGTTGCCATCTTGGACT | + |
|
Preference number: 4 (lower is better) Translates to: QLAVCLRDSGTVTLTRSPQSAGP*GLPSWT Trigger: AGTCCAAGATGGCAACCCTCAAGGACCAGCTGATTG...TGGTGACCTGGTTAGTGTGACAGTCCCACTGTCTCTGAGACACACTGCCAACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209984.2 |
||
| CDS-3UTR GCA 90 bp | GTGAGATGTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGCTCTCAGCCAAGTCTaGCACAGAGAGGCCAATGGC | + |
|
Preference number: 4 (lower is better) Translates to: VRCFPTPSQHHCTNHSSDALSQV*HREANG Trigger: GCCATTGGCCTCTCTGTGGCAGACTTGGCTGAGAGC...GTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAACATCTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CCA 90 bp | GTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGTCACACAACTGCAGCTCCTTCTaGATTCCCCAGAGGGTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: VIEACSWQCVSETVGLSHNCSSF*IPQRVS Trigger: AGACACCCTCTGGGGAATCCAGAAGGAGCTGCAGTT...GTGTGACAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR TCA 90 bp | AGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGTCTGTAACCTTTCAGCTTaGTCACCTCGTAGGCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: RGNRSLQLAVCLRDSGTVCNLSA*SPRRHC Trigger: ACAGTGCCTACGAGGTGATCAAGCTGAAAGGTTACA...GACAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR TCA 90 bp | ACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGTGTAACCTTTCAGCTTaGTCACCTCGTAGGCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: TGVIEACSWQCVSETVGLCNLSA*SPRRHC Trigger: ACAGTGCCTACGAGGTGATCAAGCTGAAAGGTTACA...CAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CCA 90 bp | GTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGAACTGCAGCTCCTTCTaGATTCCCCAGAGGGTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: VSPHHLNTTVLTTAQTRRNCSSF*IPQRVS Trigger: AGACACCCTCTGGGGAATCCAGAAGGAGCTGCAGTT...CCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CCA 90 bp | TTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGGTAACTGCAGCTCCTTCTaGATTCCCCAGAGGGTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: FPTPSQHHCTNHSSDEKGNCSSF*IPQRVS Trigger: AGACACCCTCTGGGGAATCCAGAAGGAGCTGCAGTT...ACCCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CCA 90 bp | GTGAGATGTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACAACTGCAGCTCCTTCTaGATTCCCCAGAGGGTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: VRCFPTPSQHHCTNHSSDNCSSF*IPQRVS Trigger: AGACACCCTCTGGGGAATCCAGAAGGAGCTGCAGTT...GTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAACATCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR TCA 90 bp | TCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGGTGTGGTCTGCCTATGTAACCTTTCAGCTTaGTCACCTCGTAGGCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: SQHHCTNHSSDEKGVVCLCNLSA*SPRRHC Trigger: ACAGTGCCTACGAGGTGATCAAGCTGAAAGGTTACA...TAGGCAGACCACACCCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR TCA 90 bp | GTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGTGTAACCTTTCAGCTTaGTCACCTCGTAGGCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: VSPHHLNTTVLTTAQTRRCNLSA*SPRRHC Trigger: ACAGTGCCTACGAGGTGATCAAGCTGAAAGGTTACA...CCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CCA 90 bp | ACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTCCCCGCTGGAGACAATTTTTaGTGTTTTAAGGAAGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: TQVPLGSRAELWGVRCFPAGDNF*CFKEEA Trigger: AGCCTCTTCCTTAAAACACCAAAAATTGTCTCCAGC...GGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CCA 90 bp | CACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGCTGGAGACAATTTTTaGTGTTTTAAGGAAGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: HRGNRSLQLAVCLRDSGTAGDNF*CFKEEA Trigger: AGCCTCTTCCTTAAAACACCAAAAATTGTCTCCAGC...AGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CCA 90 bp | GGCAGAGCTGTGGGGAGTGAGATGTTTCCCCACACCATCTCAACACCACTGTACGCTGGAGACAATTTTTaGTGTTTTAAGGAAGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: GRAVGSEMFPHTISTPLYAGDNF*CFKEEA Trigger: AGCCTCTTCCTTAAAACACCAAAAATTGTCTCCAGC...GTACAGTGGTGTTGAGATGGTGTGGGGAAACATCTCACTCCCCACAGCTCTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR GCA 90 bp | CTCACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGATTACACAGTAGTCTTTaGTGGAGACAATTTTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: LTGVIEACSWQCVSETVGLHSSL*WRQFLV Trigger: CACCAAAAATTGTCTCCAGCAAAGACTACTGTGTAA...TCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR GCA 90 bp | ACCACTACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTACACAGTAGTCTTTaGTGGAGACAATTTTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: TTTQVPLGSRAELWGVRCLHSSL*WRQFLV Trigger: CACCAAAAATTGTCTCCAGCAAAGACTACTGTGTAA...ACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAGTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR GCA 90 bp | CACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTTTACACAGTAGTCTTTaGTGGAGACAATTTTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: HRGNRSLQLAVCLRDSGTLHSSL*WRQFLV Trigger: CACCAAAAATTGTCTCCAGCAAAGACTACTGTGTAA...AGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CCA 90 bp | CACTACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTGCTGGAGACAATTTTTaGTGTTTTAAGGAAGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: HYTSTTWQQGRAVGSEMFAGDNF*CFKEEA Trigger: AGCCTCTTCCTTAAAACACCAAAAATTGTCTCCAGC...AAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CCA 90 bp | GTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGGCTGGAGACAATTTTTaGTGTTTTAAGGAAGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: VSPHHLNTTVLTTAQTRRAGDNF*CFKEEA Trigger: AGCCTCTTCCTTAAAACACCAAAAATTGTCTCCAGC...CCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR GCA 90 bp | GTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGTTACACAGTAGTCTTTaGTGGAGACAATTTTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: VSPHHLNTTVLTTAQTRRLHSSL*WRQFLV Trigger: CACCAAAAATTGTCTCCAGCAAAGACTACTGTGTAA...CCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR GCA 90 bp | AGATGTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGTTACACAGTAGTCTTTaGTGGAGACAATTTTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: RCFPTPSQHHCTNHSSDELHSSL*WRQFLV Trigger: CACCAAAAATTGTCTCCAGCAAAGACTACTGTGTAA...CTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAACATCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CCA 90 bp | AGATGTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGTTTGAGACCTTGAAATaGAAAAATAATACCGAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: RCFPTPSQHHCTNHSSDEFETLK*KNNTEV Trigger: GACCTCGGTATTATTTTTCCATTTCAAGGTCTCAAA...CTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAACATCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209984.2 |
||
| CDS-3UTR CAA 90 bp | ACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTCCCCTTTCGCTGGACCAGGTaGAGCCGGCTCTCCCCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: TQVPLGSRAELWGVRCFPFRWTR*SRLSPS Trigger: AGAGGGGGAGAGCCGGCTCAACCTGGTCCAGCGAAA...GGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CAA 90 bp | TTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGGTTTTCGCTGGACCAGGTaGAGCCGGCTCTCCCCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: FPTPSQHHCTNHSSDEKGFRWTR*SRLSPS Trigger: AGAGGGGGAGAGCCGGCTCAACCTGGTCCAGCGAAA...ACCCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CAA 90 bp | ACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTTTCCCCACACCATCTCAATCCGAGATTCCATTTaGTCCCAGGATACATGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: TWQQGRAVGSEMFPHTISIRDSI*SQDTWD Trigger: GTCCCATGTATCCTGGGACAAAATGGAATCTCGGAT...TGAGATGGTGTGGGGAAACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CAA 90 bp | ACCACTACACAAGTACCACTTGGCAGCAGGGCAGAGCTGTGGGGAGTGAGATGTATCTCGCCCTTGAGTTaGTCTTCCATGACGTCAACA | + |
|
Preference number: 5 (lower is better) Translates to: TTTQVPLGSRAELWGVRCISPLS*SSMTST Trigger: TGTTGACGTCATGGAAGACAAACTCAAGGGCGAGAT...ACATCTCACTCCCCACAGCTCTGCCCTGCTGCCAAGTGGTACTTGTGTAGTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 |
||
| CDS-3UTR CAA 90 bp | GTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGTCACACATCCGAGATTCCATTTaGTCCCAGGATACATGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: VIEACSWQCVSETVGLSHIRDSI*SQDTWD Trigger: GTCCCATGTATCCTGGGACAAAATGGAATCTCGGAT...GTGTGACAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CAA 90 bp | CTGTGGGGAGTGAGATGTTTCCCCACACCATCTCAACACCACTGTACTAACCACATCTCGCCCTTGAGTTaGTCTTCCATGACGTCAACA | + |
|
Preference number: 5 (lower is better) Translates to: LWGVRCFPTPSQHHCTNHISPLS*SSMTST Trigger: TGTTGACGTCATGGAAGACAAACTCAAGGGCGAGAT...GTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAACATCTCACTCCCCACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 |
||
| CDS-3UTR CAA 90 bp | TTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGAAGGGTATCTCGCCCTTGAGTTaGTCTTCCATGACGTCAACA | + |
|
Preference number: 5 (lower is better) Translates to: FPTPSQHHCTNHSSDEKGISPLS*SSMTST Trigger: TGTTGACGTCATGGAAGACAAACTCAAGGGCGAGAT...ACCCTTCTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 |
||
| CDS-3UTR CAA 90 bp | CAGCAGGCTCACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACCTGTACTTGACAATGTaGGGAATGATGAACTTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: QQAHRGNRSLQLAVCLRDLYLTM*GMMNLK Trigger: CTTCAAGTTCATCATTCCCAACATTGTCAAGTACAG...GTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTGAGCCTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CAA 90 bp | ACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGCTGTACTTGACAATGTaGGGAATGATGAACTTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: TGVIEACSWQCVSETVGLLYLTM*GMMNLK Trigger: CTTCAAGTTCATCATTCCCAACATTGTCAAGTACAG...CAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CAA 90 bp | CTCACAGGGGTAATCGAAGCCTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGTACTTGACAATGTaGGGAATGATGAACTTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LTGVIEACSWQCVSETVGLYLTM*GMMNLK Trigger: CTTCAAGTTCATCATTCCCAACATTGTCAAGTACAG...TCCCACTGTCTCTGAGACACACTGCCAACTGCAGGCTTCGATTACCCCTGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CAA 90 bp | AGATGTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACGAGATCCGAGATTCCATTTaGTCCCAGGATACATGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: RCFPTPSQHHCTNHSSDEIRDSI*SQDTWD Trigger: GTCCCATGTATCCTGGGACAAAATGGAATCTCGGAT...CTCGTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAACATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CAA 90 bp | CTGCAGTTGGCAGTGTGTCTCAGAGACAGTGGGACTGTCACACTAACCAGGTCACTGTACTTGACAATGTaGGGAATGATGAACTTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LQLAVCLRDSGTVTLTRSLYLTM*GMMNLK Trigger: CTTCAAGTTCATCATTCCCAACATTGTCAAGTACAG...TGACCTGGTTAGTGTGACAGTCCCACTGTCTCTGAGACACACTGCCAACTGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS-3UTR CAA 90 bp | GTGAGATGTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACTTGAGGGTTGCCATCTaGGACTTTGAATCTTTTGAG | + |
|
Preference number: 5 (lower is better) Translates to: VRCFPTPSQHHCTNHSSDLRVAI*DFESFE Trigger: CTCAAAAGATTCAAAGTCCAAGATGGCAACCCTCAA...GTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAACATCTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209984.2 |
||
| CDS-3UTR CAA 90 bp | GTGAGATGTTTCCCCACACCATCTCAACACCACTGTACTAACCACAGCTCAGACCTGTACTTGACAATGTaGGGAATGATGAACTTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: VRCFPTPSQHHCTNHSSDLYLTM*GMMNLK Trigger: CTTCAAGTTCATCATTCCCAACATTGTCAAGTACAG...GTCTGAGCTGTGGTTAGTACAGTGGTGTTGAGATGGTGTGGGGAAACATCTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000005051.6 ENSMUST00000048209.16 ENSMUST00000209548.2 ENSMUST00000209984.2 ENSMUST00000210815.2 |
||
| CDS CCA 72 bp | GGAGCCTGCTCTTCCTTAAGAAGATTCACAATCAGCTaGTCCTTGAGGGTTGCCATCTTGGACTTTGAATCT | + |
|
Preference number: 6 (lower is better) Translates to: GACSSLRRFTIS*SLRVAILDFES Trigger: AGATTCAAAGTCCAAGATGGCAACCCTCAAGGACCAGCTGATTGTGAATCTTCTTAAGGAAGAGCAGGCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209984.2 |
||
| CDS TCA 72 bp | GGGTTGCCATCTTGGACTTTGAATCTTTTGAGACCTTaGAATGGAAAAATAATACCGAGGTCTCCGTGTACG | + |
|
Preference number: 6 (lower is better) Translates to: GLPSWTLNLLRP*NGKIIPRSPCT Trigger: CGTACACGGAGACCTCGGTATTATTTTTCCATTTCAAGGTCTCAAAAGATTCAAAGTCCAAGATGGCAACCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209984.2 |
||
| CDS CAA 72 bp | TGCTCTTCCTTAAGAAGATTCACAATCAGCTGGTCCTaGAGGGTTGCCATCTTGGACTTTGAATCTTTTGAG | + |
|
Preference number: 6 (lower is better) Translates to: CSSLRRFTISWS*RVAILDFESFE Trigger: CTCAAAAGATTCAAAGTCCAAGATGGCAACCCTCAAGGACCAGCTGATTGTGAATCTTCTTAAGGAAGAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209984.2 |
||
| CDS CAA 72 bp | AGATTCACAATCAGCTGGTCCTTGAGGGTTGCCATCTaGGACTTTGAATCTTTTGAGACCTTGAAATGGAAA | + |
|
Preference number: 6 (lower is better) Translates to: RFTISWSLRVAI*DFESFETLKWK Trigger: TTTCCATTTCAAGGTCTCAAAAGATTCAAAGTCCAAGATGGCAACCCTCAAGGACCAGCTGATTGTGAATCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209984.2 |
||
| CDS CAA 90 bp | TCCTTAAGAAGATTCACAATCAGCTGGTCCTTGAGGGTTGCCATCTaGGACTTTGAATCTTTTGAGACCTTGAAATGGAAAAATAATACC | + |
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Preference number: 6 (lower is better) Translates to: SLRRFTISWSLRVAI*DFESFETLKWKNNT Trigger: GGTATTATTTTTCCATTTCAAGGTCTCAAAAGATTCAAAGTCCAAGATGGCAACCCTCAAGGACCAGCTGATTGTGAATCTTCTTAAGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209984.2 |
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