Pregenerated sensors for LDC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023120Ensembl transcript IDs: ENSMUST00000023884.7
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGATTCTCTTCCGTTCAAGGATGCTCAGACGGTAGAGCTGGGCTGTaGCACAACTGGACAGGTCTTGAAAGCCTTGGCAGAGACTGTGCA | + |
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Preference number: 1 (lower is better) Translates to: GFSSVQGCSDGRAGL*HNWTGLESLGRDCA Trigger: TGCACAGTCTCTGCCAAGGCTTTCAAGACCTGTCCAGTTGTGTCACAGCCCAGCTCTACCGTCTGAGCATCCTTGAACGGAAGAGAATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CCA 90 bp | CCCAAGGACCAACCCCATAGGCCTCTCACAGTAAGCTTTCCCCAGTaGGCATATCATACTGGGTGTCTGACTCCTCTTCATTCTGGCCAT | + |
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Preference number: 1 (lower is better) Translates to: PKDQPHRPLTVSFPQ*AYHTGCLTPLHSGH Trigger: ATGGCCAGAATGAAGAGGAGTCAGACACCCAGTATGATATGCCCACTGGGGAAAGCTTACTGTGAGAGGCCTATGGGGTTGGTCCTTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CCA 90 bp | ATGTGTCAGCACAAATCTGGCCTTCCTTGTCTCACCCATTCTCCATaGGGGTCCTATAGTCTAGGAGATCGAGAGCCAGAAGGGATGCCA | + |
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Preference number: 1 (lower is better) Translates to: MCQHKSGLPCLTHSP*GSYSLGDREPEGMP Trigger: TGGCATCCCTTCTGGCTCTCGATCTCCTAGACTATAGGACCCCCATGGAGAATGGGTGAGACAAGGAAGGCCAGATTTGTGCTGACACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR-3UTR TCA 90 bp | GCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGATGTCGGTAGAGCTGGGCTGTaGCACAACTGGACAGGTCTT | + |
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Preference number: 2 (lower is better) Translates to: AFPTFMGGVSSPHLPLDVGRAGL*HNWTGL Trigger: AAGACCTGTCCAGTTGTGTCACAGCCCAGCTCTACC...GACATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR-3UTR GCA 90 bp | CTGAGCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGAAAAGGGTCTCATCAGTaGAGAAGAGGCCAGGCCTCA | + |
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Preference number: 2 (lower is better) Translates to: LSLSHIHGWSQQPTPSTGKGSHQ*RRGQAS Trigger: TGAGGCCTGGCCTCTTCTGCACTGATGAGACCCTTT...TCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CAA 90 bp | CCTAAGTTGCAAGCTGTGGAGAGGCCAAATGAGCACCACACTGTCTaGAAGACTGAGCCTTTCCCACATTCATGGGTGGAGTCAGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: PKLQAVERPNEHHTV*KTEPFPHSWVESAA Trigger: GGCTGCTGACTCCACCCATGAATGTGGGAAAGGCTCAGTCTTCAAGACAGTGTGGTGCTCATTTGGCCTCTCCACAGCTTGCAACTTAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CAA 90 bp | ACGGTAGAGCTGGGCTGTGACACAACTGGACAGGTCTTGAAAGCCTaGGCAGAGACTGTGCATCCCAGAAAGCTTCGTCAGGCAAAGTTT | + |
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Preference number: 2 (lower is better) Translates to: TVELGCDTTGQVLKA*AETVHPRKLRQAKF Trigger: AAACTTTGCCTGACGAAGCTTTCTGGGATGCACAGTCTCTGCCAAGGCTTTCAAGACCTGTCCAGTTGTGTCACAGCCCAGCTCTACCGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR-3UTR CCA 90 bp | TGTGACACAACTGGACAGGTCTTGAAAGCCTTGGCAGAGACTGTGCATCCCAGAGTGTCAGCACAAATCTaGCCTTCCTTGTCTCACCCA | + |
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Preference number: 2 (lower is better) Translates to: CDTTGQVLKALAETVHPRVSAQI*PSLSHP Trigger: TGGGTGAGACAAGGAAGGCCAGATTTGTGCTGACAC...TCTGGGATGCACAGTCTCTGCCAAGGCTTTCAAGACCTGTCCAGTTGTGTCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR-3UTR CCA 90 bp | CCCACCTCACTTCATCCTGAAGCACTCCTAGGTACCCTTTTGTTAGTATCCTTCCCCAGTACAGTCATCTaGTACTTCAAGCTTACTTTA | + |
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Preference number: 2 (lower is better) Translates to: PTSLHPEALLGTLLLVSFPSTVI*YFKLTL Trigger: TAAAGTAAGCTTGAAGTACCAGATGACTGTACTGGG...GAAGGATACTAACAAAAGGGTACCTAGGAGTGCTTCAGGATGAAGTGAGGTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR-3UTR CAA 90 bp | CTGAGCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGACAGGTCTTGAAAGCCTaGGCAGAGACTGTGCATCCC | + |
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Preference number: 3 (lower is better) Translates to: LSLSHIHGWSQQPTPSTGQVLKA*AETVHP Trigger: GGGATGCACAGTCTCTGCCAAGGCTTTCAAGACCTG...TCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CCA 72 bp | GTCAGCAGCCCACACCTTCCACTGGATGTCTCATGGTaGGGGATTCTCTTCCGTTCAAGGATGCTCAGACGG | + |
|
Preference number: 3 (lower is better) Translates to: VSSPHLPLDVSW*GILFRSRMLRR Trigger: CCGTCTGAGCATCCTTGAACGGAAGAGAATCCCCCACCATGAGACATCCAGTGGAAGGTGTGGGCTGCTGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CCA 72 bp | GGAGTCAGCAGCCCACACCTTCCACTGGATGTCTCATaGTGGGGGATTCTCTTCCGTTCAAGGATGCTCAGA | + |
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Preference number: 3 (lower is better) Translates to: GVSSPHLPLDVS*WGILFRSRMLR Trigger: TCTGAGCATCCTTGAACGGAAGAGAATCCCCCACCATGAGACATCCAGTGGAAGGTGTGGGCTGCTGACTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR TCA 72 bp | TCCGTTCAAGGATGCTCAGACGGTAGAGCTGGGCTGTaGCACAACTGGACAGGTCTTGAAAGCCTTGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: SVQGCSDGRAGL*HNWTGLESLGR Trigger: TCTGCCAAGGCTTTCAAGACCTGTCCAGTTGTGTCACAGCCCAGCTCTACCGTCTGAGCATCCTTGAACGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CCA 72 bp | CATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTaGATGTCTCATGGTGGGGGATTCTCTTCCGTTCAA | + |
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Preference number: 3 (lower is better) Translates to: HSWVESAAHTFH*MSHGGGFSSVQ Trigger: TTGAACGGAAGAGAATCCCCCACCATGAGACATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CCA 72 bp | CACACTGTCTTGAAGACTGAGCCTTTCCCACATTCATaGGTGGAGTCAGCAGCCCACACCTTCCACTGGATG | + |
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Preference number: 3 (lower is better) Translates to: HTVLKTEPFPHS*VESAAHTFHWM Trigger: CATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGCTCAGTCTTCAAGACAGTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR-3UTR CAA 90 bp | TCTCATGGTGGGGGATTCTCTTCCGTTCAAGGATGCTCAGACGGTAGAGCTGGGACAACTGGACAGGTCTaGAAAGCCTTGGCAGAGACT | + |
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Preference number: 3 (lower is better) Translates to: SHGGGFSSVQGCSDGRAGTTGQV*KALAET Trigger: AGTCTCTGCCAAGGCTTTCAAGACCTGTCCAGTTGT...CCCAGCTCTACCGTCTGAGCATCCTTGAACGGAAGAGAATCCCCCACCATGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR TCA 72 bp | AAGCTGTGGAGAGGCCAAATGAGCACCACACTGTCTTaGAGACTGAGCCTTTCCCACATTCATGGGTGGAGT | + |
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Preference number: 3 (lower is better) Translates to: KLWRGQMSTTLS*RLSLSHIHGWS Trigger: ACTCCACCCATGAATGTGGGAAAGGCTCAGTCTTCAAGACAGTGTGGTGCTCATTTGGCCTCTCCACAGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR-3UTR CAA 90 bp | CTTGAAAGCCTTGGCAGAGACTGTGCATCCCAGAAAGCTTCGTCAGGCAAAGTTCTCCTAGGTACCCTTTaGTTAGTATCCTTCCCCAGG | + |
|
Preference number: 3 (lower is better) Translates to: LESLGRDCASQKASSGKVLLGTL*LVSFPR Trigger: CCTGGGGAAGGATACTAACAAAAGGGTACCTAGGAG...AACTTTGCCTGACGAAGCTTTCTGGGATGCACAGTCTCTGCCAAGGCTTTCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR GCA 90 bp | CTGAGCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGACAGCTGCCAGGCAGATaGCCCTGGCCCCAAGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: LSLSHIHGWSQQPTPSTGQLPGR*PWPQGD Trigger: ATCACCTTGGGGCCAGGGGCATCTGCCTGGCAGCTG...TCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGCTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | GCTCAGACGGTAGAGCTGGGCTGTGACACAACTGGACAGGTCTTGAAAGCCTTGACTCTGGGCAGGGCCTaGAGGAAGGTCCGATGGCGG | + |
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Preference number: 4 (lower is better) Translates to: AQTVELGCDTTGQVLKALTLGRA*RKVRWR Trigger: CCGCCATCGGACCTTCCTCCAGGCCCTGCCCAGAGT...CAAGGCTTTCAAGACCTGTCCAGTTGTGTCACAGCCCAGCTCTACCGTCTGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | CTGAGCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGAGCTGCGAACTGGATGTaGGAGACGGCCTTGCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: LSLSHIHGWSQQPTPSTGAANWM*ETALQG Trigger: CCCCTGCAAGGCCGTCTCCCACATCCAGTTCGCAGC...TCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGCTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR TCA 90 bp | GCTCAGACGGTAGAGCTGGGCTGTGACACAACTGGACAGGTCTTGAAAGCCTTGGGGCCAGGGCAGTGTTaGTCACTCTCGCCACCTCCT | + |
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Preference number: 4 (lower is better) Translates to: AQTVELGCDTTGQVLKALGPGQC*SLSPPP Trigger: AGGAGGTGGCGAGAGTGATCAACACTGCCCTGGCCC...CAAGGCTTTCAAGACCTGTCCAGTTGTGTCACAGCCCAGCTCTACCGTCTGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | CCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGATGTCTCCAGCTCTCCCTGGCTaGCACAGTCAAAGCCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: PFPHSWVESAAHTFHWMSPALPG*HSQSRC Trigger: GCACCGGCTTTGACTGTGCCAGCCAGGGAGAGCTGG...AGACATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | GCTCAGACGGTAGAGCTGGGCTGTGACACAACTGGACAGGTCTTGAAAGCCTTGCAGTCGGAACCCACGTaGAAGGAGGCCCCCACCACA | + |
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Preference number: 4 (lower is better) Translates to: AQTVELGCDTTGQVLKALQSEPT*KEAPTT Trigger: TGTGGTGGGGGCCTCCTTCCACGTGGGTTCCGACTG...CAAGGCTTTCAAGACCTGTCCAGTTGTGTCACAGCCCAGCTCTACCGTCTGAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR GCA 90 bp | GAGCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGATGTTCTTCAAGACCAGCTaGCAGGCAGATGCCCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: EPFPHSWVESAAHTFHWMFFKTS*QADAPG Trigger: GCCAGGGGCATCTGCCTGGCAGCTGGTCTTGAAGAA...CATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | GCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGATGTCTGTTCCAGCTCTCCCTaGCTGGCACAGTCAAAGCCG | + |
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Preference number: 4 (lower is better) Translates to: AFPTFMGGVSSPHLPLDVCSSSP*LAQSKP Trigger: CGGCTTTGACTGTGCCAGCCAGGGAGAGCTGGAACA...GACATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR GCA 90 bp | GAGCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGATGTGTGGTGGCCAGCCTTaGAGCCCATCTCAAACACAC | + |
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Preference number: 4 (lower is better) Translates to: EPFPHSWVESAAHTFHWMCGGQP*SPSQTH Trigger: GTGTGTTTGAGATGGGCTGCAAGGCTGGCCACCACA...CATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | GCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGATGTCGATGGGCTCCAAACTTaGTGTGCAGAGGGAAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: AFPTFMGGVSSPHLPLDVDGLQT*CAEGRC Trigger: GCACCTTCCCTCTGCACACCAAGTTTGGAGCCCATC...GACATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | GCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGATGTCAGAGCCCTTAACTCCTaGGAAGCCCCCTCCAAGATC | + |
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Preference number: 4 (lower is better) Translates to: AFPTFMGGVSSPHLPLDVRALNS*EAPSKI Trigger: GATCTTGGAGGGGGCTTCCCAGGAGTTAAGGGCTCT...GACATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR GCA 90 bp | CATTCTCCATGGGGGTCCTATAGTCTAGGAGATCGAGAGCCAGAAGGGATGCCAGAAGCGGCCAGGCTCTaGAATGACCTCGATACCGGT | + |
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Preference number: 4 (lower is better) Translates to: HSPWGSYSLGDREPEGMPEAARL*NDLDTG Trigger: ACCGGTATCGAGGTCATTGCAGAGCCTGGCCGCTTC...TGGCATCCCTTCTGGCTCTCGATCTCCTAGACTATAGGACCCCCATGGAGAATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR GCA 90 bp | TCTCACAGTAAGCTTTCCCCAGTGGGCATATCATACTGGGTGTCTGACTCCTCTCACAGTCAAAGCCGGTaGCCAGGGCAGCCAAGACGA | + |
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Preference number: 4 (lower is better) Translates to: SHSKLSPVGISYWVSDSSHSQSR*PGQPRR Trigger: TCGTCTTGGCTGCCCTGGGCACCGGCTTTGACTGTG...AGAGGAGTCAGACACCCAGTATGATATGCCCACTGGGGAAAGCTTACTGTGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR GCA 90 bp | GAGCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGATGCTCATTAAGGTAGTATaGCAGCTTCCTGTGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: EPFPHSWVESAAHTFHWMLIKVV*QLPVAS Trigger: GGAGGCCACAGGAAGCTGGCATACTACCTTAATGAG...CATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | TGTGACACAACTGGACAGGTCTTGAAAGCCTTGGCAGAGACTGTGCATCCCAGAAGCTCTCTGGCAACCTaGAGCAGGTGTCCACATGCC | + |
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Preference number: 4 (lower is better) Translates to: CDTTGQVLKALAETVHPRSSLAT*SRCPHA Trigger: GGCATGTGGACACCTGCTCCAGGTTGCCAGAGAGCT...TCTGGGATGCACAGTCTCTGCCAAGGCTTTCAAGACCTGTCCAGTTGTGTCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | GAGAGGCCAAATGAGCACCACACTGTCTTGAAGACTGAGCCTTTCCCACATTCACCAACCCCAGCTCTCTaGCAACCTGGAGCAGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: ERPNEHHTVLKTEPFPHSPTPAL*QPGAGV Trigger: GACACCTGCTCCAGGTTGCCAGAGAGCTGGGGTTGG...TGAATGTGGGAAAGGCTCAGTCTTCAAGACAGTGTGGTGCTCATTTGGCCTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CAA 72 bp | CTGGGCTGTGACACAACTGGACAGGTCTTGAAAGCCTaGGCAGAGACTGTGCATCCCAGAAAGCTTCGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LGCDTTGQVLKA*AETVHPRKLRQ Trigger: CTGACGAAGCTTTCTGGGATGCACAGTCTCTGCCAAGGCTTTCAAGACCTGTCCAGTTGTGTCACAGCCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CAA 72 bp | ACGGTAGAGCTGGGCTGTGACACAACTGGACAGGTCTaGAAAGCCTTGGCAGAGACTGTGCATCCCAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: TVELGCDTTGQV*KALAETVHPRK Trigger: CTTTCTGGGATGCACAGTCTCTGCCAAGGCTTTCAAGACCTGTCCAGTTGTGTCACAGCCCAGCTCTACCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR TCA 90 bp | TCTCACAGTAAGCTTTCCCCAGTGGGCATATCATACTGGGTGTCTGACTCCTCTCAAGGTGATGGGCTCTaGTGGCCTCAGGTGTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SHSKLSPVGISYWVSDSSQGDGL*WPQVFC Trigger: GCAGAACACCTGAGGCCATCAGAGCCCATCACCTTG...AGAGGAGTCAGACACCCAGTATGATATGCCCACTGGGGAAAGCTTACTGTGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | GTAAGCTTTCCCCAGTGGGCATATCATACTGGGTGTCTGACTCCTCTTCATTCTAGGAGGCTCATGTGGTaGCCAGCCTTGCAGCCCATC | + |
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Preference number: 4 (lower is better) Translates to: VSFPQWAYHTGCLTPLHSRRLMW*PALQPI Trigger: GATGGGCTGCAAGGCTGGCCACCACATGAGCCTCCT...AGAATGAAGAGGAGTCAGACACCCAGTATGATATGCCCACTGGGGAAAGCTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CAA 72 bp | CAAGCTGTGGAGAGGCCAAATGAGCACCACACTGTCTaGAAGACTGAGCCTTTCCCACATTCATGGGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: QAVERPNEHHTV*KTEPFPHSWVE Trigger: CTCCACCCATGAATGTGGGAAAGGCTCAGTCTTCAAGACAGTGTGGTGCTCATTTGGCCTCTCCACAGCTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR TCA 90 bp | TATAGTCTAGGAGATCGAGAGCCAGAAGGGATGCCAAGCTACCCAGTACAGTCACCAGCAGATCCTTCTTaGCCTCAGAGGGGGTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: YSLGDREPEGMPSYPVQSPADPS*PQRGCS Trigger: TGAACACCCCCTCTGAGGTCAAGAAGGATCTGCTGG...TGACTGTACTGGGTAGCTTGGCATCCCTTCTGGCTCTCGATCTCCTAGACTATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR GCA 90 bp | TGTGACACAACTGGACAGGTCTTGAAAGCCTTGGCAGAGACTGTGCATCCCAGATGGCCTCAGGTGTTCTaGAACTCCCAGCAGATCCTT | + |
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Preference number: 4 (lower is better) Translates to: CDTTGQVLKALAETVHPRWPQVF*NSQQIL Trigger: AAGGATCTGCTGGGAGTTGCAGAACACCTGAGGCCA...TCTGGGATGCACAGTCTCTGCCAAGGCTTTCAAGACCTGTCCAGTTGTGTCACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | TATAGTCTAGGAGATCGAGAGCCAGAAGGGATGCCAAGCTACCCAGTACAGTCACCACATGCCTCCAGATaGGCTCCAAACTTGGTGTGC | + |
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Preference number: 4 (lower is better) Translates to: YSLGDREPEGMPSYPVQSPHASR*APNLVC Trigger: GCACACCAAGTTTGGAGCCCATCTGGAGGCATGTGG...TGACTGTACTGGGTAGCTTGGCATCCCTTCTGGCTCTCGATCTCCTAGACTATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | TCTCACAGTAAGCTTTCCCCAGTGGGCATATCATACTGGGTGTCTGACTCCTCTGATGGCAGTCAGCGATaGCCTGTCTGTAGCTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: SHSKLSPVGISYWVSDSSDGSQR*PVCSSQ Trigger: CTGAGAGCTACAGACAGGCCATCGCTGACTGCCATC...AGAGGAGTCAGACACCCAGTATGATATGCCCACTGGGGAAAGCTTACTGTGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR TCA 90 bp | TGTGACACAACTGGACAGGTCTTGAAAGCCTTGGCAGAGACTGTGCATCCCAGAGGTTGCTGTTACACTTaGCTGCATAGAAGGGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: CDTTGQVLKALAETVHPRGCCYT*LHRRAG Trigger: TCCAGCCCTTCTATGCAGTCAAGTGTAACAGCAACC...TCTGGGATGCACAGTCTCTGCCAAGGCTTTCAAGACCTGTCCAGTTGTGTCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR TCA 90 bp | TCTCACAGTAAGCTTTCCCCAGTGGGCATATCATACTGGGTGTCTGACTCCTCTAGAGGGAAGGTGCTTTaGCTGTCCAGGGTCTGTATC | + |
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Preference number: 4 (lower is better) Translates to: SHSKLSPVGISYWVSDSSRGKVL*LSRVCI Trigger: GATACAGACCCTGGACAGTCAAAGCACCTTCCCTCT...AGAGGAGTCAGACACCCAGTATGATATGCCCACTGGGGAAAGCTTACTGTGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CCA 90 bp | CTTGAAAGCCTTGGCAGAGACTGTGCATCCCAGAAAGCTTCGTCAGGCAAAGTTTATGCCAGCTTCCTGTaGCCTCCTGGATCTAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: LESLGRDCASQKASSGKVYASFL*PPGSRE Trigger: TTCCCTAGATCCAGGAGGCCACAGGAAGCTGGCATA...AACTTTGCCTGACGAAGCTTTCTGGGATGCACAGTCTCTGCCAAGGCTTTCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| 3UTR CAA 72 bp | ACCTCACTTCATCCTGAAGCACTCCTAGGTACCCTTTaGTTAGTATCCTTCCCCAGGGGACCCAGTCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: TSLHPEALLGTL*LVSFPRGPSLF Trigger: AAAAAGACTGGGTCCCCTGGGGAAGGATACTAACAAAAGGGTACCTAGGAGTGCTTCAGGATGAAGTGAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS TCA 90 bp | CAGCTGTGCACACGGACCCCGCATAGAAGCGGCCAGGCTCTGCAATaGCCTCGATACCGGTCTCCTCCGGAAAGTACTGGGCCAGGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: QLCTRTPHRSGQALQ*PRYRSPPESTGPGQ Trigger: CTGCCCTGGCCCAGTACTTTCCGGAGGAGACCGGTATCGAGGTCATTGCAGAGCCTGGCCGCTTCTATGCGGGGTCCGTGTGCACAGCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS GCA 90 bp | CCAGCACTTGTTCCAGCTCTCCCTGGCTGGCACAGTCAAAGCCGGTaGCCAGGGCAGCCAAGACGAGCAGCACCCAGGGGTTGCTGTTAC | + |
|
Preference number: 5 (lower is better) Translates to: PALVPALPGWHSQSR*PGQPRRAAPRGCCY Trigger: GTAACAGCAACCCCTGGGTGCTGCTCGTCTTGGCTGCCCTGGGCACCGGCTTTGACTGTGCCAGCCAGGGAGAGCTGGAACAAGTGCTGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS TCA 90 bp | CTGCGAACTGGATGTGGGAGACGGCCTTGCAGGGGTTGGCGAAGATaGTTCTGGAGGGGGCCACGCCCAAGCCCAGCACTTGTTCCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: LRTGCGRRPCRGWRR*FWRGPRPSPALVPA Trigger: AGCTGGAACAAGTGCTGGGCTTGGGCGTGGCCCCCTCCAGAATCATCTTCGCCAACCCCTGCAAGGCCGTCTCCCACATCCAGTTCGCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CCA 90 bp | TCGAAGGTCAGAAGCTGCACCCCACAGCGGGCTGCGAACTGGATGTaGGAGACGGCCTTGCAGGGGTTGGCGAAGATGATTCTGGAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: SKVRSCTPQRAANWM*ETALQGLAKMILEG Trigger: CCCCTCCAGAATCATCTTCGCCAACCCCTGCAAGGCCGTCTCCCACATCCAGTTCGCAGCCCGCTGTGGGGTGCAGCTTCTGACCTTCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS TCA 90 bp | GACCAGCTGCCAGGCAGATGCCCCTGGCCCCAAGGTGATGGGCTCTaGTGGCCTCAGGTGTTCTGCAACTCCCAGCAGATCCTTCTTGAC | + |
|
Preference number: 5 (lower is better) Translates to: DQLPGRCPWPQGDGL*WPQVFCNSQQILLD Trigger: GTCAAGAAGGATCTGCTGGGAGTTGCAGAACACCTGAGGCCATCAGAGCCCATCACCTTGGGGCCAGGGGCATCTGCCTGGCAGCTGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS GCA 90 bp | GGAAGCCCCCTCCAAGATCCAGGAGGCTCATGTGGTGGCCAGCCTTaGAGCCCATCTCAAACACACGATGGCAGTCAGCGATGGCCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: GSPLQDPGGSCGGQP*SPSQTHDGSQRWPV Trigger: GACAGGCCATCGCTGACTGCCATCGTGTGTTTGAGATGGGCTGCAAGGCTGGCCACCACATGAGCCTCCTGGATCTTGGAGGGGGCTTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS TCA 90 bp | GCCTCCAGATGGGCTCCAAACTTGGTGTGCAGAGGGAAGGTGCTTTaGCTGTCCAGGGTCTGTATCCGGAGAACCAGCCTAGCCCTCGGG | + |
|
Preference number: 5 (lower is better) Translates to: ASRWAPNLVCRGKVL*LSRVCIRRTSLALG Trigger: CCCGAGGGCTAGGCTGGTTCTCCGGATACAGACCCTGGACAGTCAAAGCACCTTCCCTCTGCACACCAAGTTTGGAGCCCATCTGGAGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS GCA 90 bp | TTCCTCCTCATTGTCGAAGGTCAGAAGCTGCACCCCACAGCGGGCTaGGAACTGGATGTGGGAGACGGCCTTGCAGGGGTTGGCGAAGAT | + |
|
Preference number: 5 (lower is better) Translates to: FLLIVEGQKLHPTAG*ELDVGDGLAGVGED Trigger: ATCTTCGCCAACCCCTGCAAGGCCGTCTCCCACATCCAGTTCGCAGCCCGCTGTGGGGTGCAGCTTCTGACCTTCGACAATGAGGAGGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS GCA 90 bp | CGGGCCAGCTTAATCAGTTCCTCCTCATTGTCGAAGGTCAGAAGCTaGACCCCACAGCGGGCTGCGAACTGGATGTGGGAGACGGCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: RASLISSSSLSKVRS*TPQRAANWMWETAL Trigger: CAAGGCCGTCTCCCACATCCAGTTCGCAGCCCGCTGTGGGGTGCAGCTTCTGACCTTCGACAATGAGGAGGAACTGATTAAGCTGGCCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CCA 90 bp | GGCCAGCCTTGCAGCCCATCTCAAACACACGATGGCAGTCAGCGATaGCCTGTCTGTAGCTCTCAGGTGTGTGGCAGTCGGAACCCACGT | + |
|
Preference number: 5 (lower is better) Translates to: GQPCSPSQTHDGSQR*PVCSSQVCGSRNPR Trigger: ACGTGGGTTCCGACTGCCACACACCTGAGAGCTACAGACAGGCCATCGCTGACTGCCATCGTGTGTTTGAGATGGGCTGCAAGGCTGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS TCA 90 bp | TCTTCTTCAAGACCAGCTGCCAGGCAGATGCCCCTGGCCCCAAGGTaGTGGGCTCTGATGGCCTCAGGTGTTCTGCAACTCCCAGCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: SSSRPAARQMPLAPR*WALMASGVLQLPAD Trigger: ATCTGCTGGGAGTTGCAGAACACCTGAGGCCATCAGAGCCCATCACCTTGGGGCCAGGGGCATCTGCCTGGCAGCTGGTCTTGAAGAAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CCA 90 bp | TTAACTCCTGGGAAGCCCCCTCCAAGATCCAGGAGGCTCATGTGGTaGCCAGCCTTGCAGCCCATCTCAAACACACGATGGCAGTCAGCG | + |
|
Preference number: 5 (lower is better) Translates to: LTPGKPPPRSRRLMW*PALQPISNTRWQSA Trigger: CGCTGACTGCCATCGTGTGTTTGAGATGGGCTGCAAGGCTGGCCACCACATGAGCCTCCTGGATCTTGGAGGGGGCTTCCCAGGAGTTAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CCA 90 bp | CCCTTAACTCCTGGGAAGCCCCCTCCAAGATCCAGGAGGCTCATGTaGTGGCCAGCCTTGCAGCCCATCTCAAACACACGATGGCAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: PLTPGKPPPRSRRLM*WPALQPISNTRWQS Trigger: TGACTGCCATCGTGTGTTTGAGATGGGCTGCAAGGCTGGCCACCACATGAGCCTCCTGGATCTTGGAGGGGGCTTCCCAGGAGTTAAGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CCA 90 bp | CACTCTCGCCACCTCCTCAAATTTGGCTTCAGAGCCCTTAACTCCTaGGAAGCCCCCTCCAAGATCCAGGAGGCTCATGTGGTGGCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: HSRHLLKFGFRALNS*EAPSKIQEAHVVAS Trigger: GCTGGCCACCACATGAGCCTCCTGGATCTTGGAGGGGGCTTCCCAGGAGTTAAGGGCTCTGAAGCCAAATTTGAGGAGGTGGCGAGAGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS-3UTR CAA 90 bp | CTTCCGTTCAAGGATGCTCAGACGGTAGAGCTGGGCTGTGACACAACTGGACAGTGGGCCAGGGCAGTGTaGATCACTCTCGCCACCTCC | + |
|
Preference number: 5 (lower is better) Translates to: LPFKDAQTVELGCDTTGQWARAV*ITLATS Trigger: GGAGGTGGCGAGAGTGATCAACACTGCCCTGGCCCA...CTGTCCAGTTGTGTCACAGCCCAGCTCTACCGTCTGAGCATCCTTGAACGGAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CCA 90 bp | TGGCGGCTGACCAGCACATCCAGGTCAGCCACCATGAAGGCATCTTaGCGGCCCGAGATGGACAACTCCTTGATCTTCTTCAAGACCAGC | + |
|
Preference number: 5 (lower is better) Translates to: WRLTSTSRSATMKAS*RPEMDNSLIFFKTS Trigger: GCTGGTCTTGAAGAAGATCAAGGAGTTGTCCATCTCGGGCCGCCAAGATGCCTTCATGGTGGCTGACCTGGATGTGCTGGTCAGCCGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CCA 90 bp | CCAGGCTCTGCAATGACCTCGATACCGGTCTCCTCCGGAAAGTACTaGGCCAGGGCAGTGTTGATCACTCTCGCCACCTCCTCAAATTTG | + |
|
Preference number: 5 (lower is better) Translates to: PGSAMTSIPVSSGKY*ARAVLITLATSSNL Trigger: CAAATTTGAGGAGGTGGCGAGAGTGATCAACACTGCCCTGGCCCAGTACTTTCCGGAGGAGACCGGTATCGAGGTCATTGCAGAGCCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS-3UTR CAA 90 bp | CTGAGCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGAAGCAGCACCCAGGGGTaGCTGTTACACTTGACTGCA | + |
|
Preference number: 5 (lower is better) Translates to: LSLSHIHGWSQQPTPSTGSSTQG*LLHLTA Trigger: TGCAGTCAAGTGTAACAGCAACCCCTGGGTGCTGCT...TCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS-3UTR CAA 90 bp | GCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGATGTCAGATGGGCTCCAAACTaGGTGTGCAGAGGGAAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: AFPTFMGGVSSPHLPLDVRWAPN*VCRGKV Trigger: CACCTTCCCTCTGCACACCAAGTTTGGAGCCCATCT...GACATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS TCA 90 bp | GTTGGGGGCTCATGGCATCATAGACAGTTGCGATCGGGAAGCCATTaGAGGTGGAACTCATGGAGCTACTGTAGGCACCCATGTCAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: VGGSWHHRQLRSGSH*RWNSWSYCRHPCQG Trigger: TCCCTGACATGGGTGCCTACAGTAGCTCCATGAGTTCCACCTTCAATGGCTTCCCGATCGCAACTGTCTATGATGCCATGAGCCCCCAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS-3UTR CAA 90 bp | CCCACCTCACTTCATCCTGAAGCACTCCTAGGTACCCTTTTGTTAGTATCCTTCGCCCAAGCCCAGCACTaGTTCCAGCTCTCCCTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: PTSLHPEALLGTLLLVSFAQAQH*FQLSLA Trigger: AGCCAGGGAGAGCTGGAACAAGTGCTGGGCTTGGGC...GAAGGATACTAACAAAAGGGTACCTAGGAGTGCTTCAGGATGAAGTGAGGTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS-3UTR CAA 90 bp | CCTTGGCAGAGACTGTGCATCCCAGAAAGCTTCGTCAGGCAAAGTTTAGAAAGCATGTGGGAGACGGCCTaGCAGGGGTTGGCGAAGATG | + |
|
Preference number: 5 (lower is better) Translates to: PWQRLCIPESFVRQSLESMWETA*QGLAKM Trigger: CATCTTCGCCAACCCCTGCAAGGCCGTCTCCCACAT...GCTTTCTAAACTTTGCCTGACGAAGCTTTCTGGGATGCACAGTCTCTGCCAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS-3UTR CAA 90 bp | CTCACAGTAAGCTTTCCCCAGTGGGCATATCATACTGGGTGTCTGACTCCTCTTCCCAGCAGATCCTTCTaGACCTCAGAGGGGGTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: LTVSFPQWAYHTGCLTPLPSRSF*TSEGVF Trigger: GAACACCCCCTCTGAGGTCAAGAAGGATCTGCTGGG...AAGAGGAGTCAGACACCCAGTATGATATGCCCACTGGGGAAAGCTTACTGTGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS-3UTR CAA 90 bp | TCTCATGGTGGGGGATTCTCTTCCGTTCAAGGATGCTCAGACGGTAGAGCTGGGGCCACCTCCTCAAATTaGGCTTCAGAGCCCTTAACT | + |
|
Preference number: 5 (lower is better) Translates to: SHGGGFSSVQGCSDGRAGATSSN*ASEPLT Trigger: AGTTAAGGGCTCTGAAGCCAAATTTGAGGAGGTGGC...CCCAGCTCTACCGTCTGAGCATCCTTGAACGGAAGAGAATCCCCCACCATGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS-3UTR CAA 90 bp | GAGCCTTTCCCACATTCATGGGTGGAGTCAGCAGCCCACACCTTCCACTGGATGTCTAGGGAAGACTTCTaGACTATGATATTCACAGCA | + |
|
Preference number: 5 (lower is better) Translates to: EPFPHSWVESAAHTFHWMSREDF*TMIFTA Trigger: TGCTGTGAATATCATAGTCAAGAAGTCTTCCCTAGA...CATCCAGTGGAAGGTGTGGGCTGCTGACTCCACCCATGAATGTGGGAAAGGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS-3UTR CAA 90 bp | GTAAGCTTTCCCCAGTGGGCATATCATACTGGGTGTCTGACTCCTCTTCATTCTGAGATGGACAACTCCTaGATCTTCTTCAAGACCAGC | + |
|
Preference number: 5 (lower is better) Translates to: VSFPQWAYHTGCLTPLHSEMDNS*IFFKTS Trigger: GCTGGTCTTGAAGAAGATCAAGGAGTTGTCCATCTC...AGAATGAAGAGGAGTCAGACACCCAGTATGATATGCCCACTGGGGAAAGCTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS CCA 72 bp | GCCACGCCCAAGCCCAGCACTTGTTCCAGCTCTCCCTaGCTGGCACAGTCAAAGCCGGTGCCCAGGGCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: ATPKPSTCSSSP*LAQSKPVPRAA Trigger: GGCTGCCCTGGGCACCGGCTTTGACTGTGCCAGCCAGGGAGAGCTGGAACAAGTGCTGGGCTTGGGCGTGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS GCA 72 bp | GTTCCAGCTCTCCCTGGCTGGCACAGTCAAAGCCGGTaGCCAGGGCAGCCAAGACGAGCAGCACCCAGGGGT | + |
|
Preference number: 6 (lower is better) Translates to: VPALPGWHSQSR*PGQPRRAAPRG Trigger: ACCCCTGGGTGCTGCTCGTCTTGGCTGCCCTGGGCACCGGCTTTGACTGTGCCAGCCAGGGAGAGCTGGAAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CAA 90 bp | CCACAGCGGGCTGCGAACTGGATGTGGGAGACGGCCTTGCAGGGGTaGGCGAAGATGATTCTGGAGGGGGCCACGCCCAAGCCCAGCACT | + |
|
Preference number: 6 (lower is better) Translates to: PQRAANWMWETALQG*AKMILEGATPKPST Trigger: AGTGCTGGGCTTGGGCGTGGCCCCCTCCAGAATCATCTTCGCCAACCCCTGCAAGGCCGTCTCCCACATCCAGTTCGCAGCCCGCTGTGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CAA 72 bp | CCACAGCGGGCTGCGAACTGGATGTGGGAGACGGCCTaGCAGGGGTTGGCGAAGATGATTCTGGAGGGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: PQRAANWMWETA*QGLAKMILEGA Trigger: GGCCCCCTCCAGAATCATCTTCGCCAACCCCTGCAAGGCCGTCTCCCACATCCAGTTCGCAGCCCGCTGTGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS TCA 72 bp | GGATGTGGGAGACGGCCTTGCAGGGGTTGGCGAAGATaGTTCTGGAGGGGGCCACGCCCAAGCCCAGCACTT | + |
|
Preference number: 6 (lower is better) Translates to: GCGRRPCRGWRR*FWRGPRPSPAL Trigger: AAGTGCTGGGCTTGGGCGTGGCCCCCTCCAGAATCATCTTCGCCAACCCCTGCAAGGCCGTCTCCCACATCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CCA 72 bp | AAGGTCAGAAGCTGCACCCCACAGCGGGCTGCGAACTaGATGTGGGAGACGGCCTTGCAGGGGTTGGCGAAG | + |
|
Preference number: 6 (lower is better) Translates to: KVRSCTPQRAAN*MWETALQGLAK Trigger: CTTCGCCAACCCCTGCAAGGCCGTCTCCCACATCCAGTTCGCAGCCCGCTGTGGGGTGCAGCTTCTGACCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS TCA 72 bp | CCAGGCAGATGCCCCTGGCCCCAAGGTGATGGGCTCTaGTGGCCTCAGGTGTTCTGCAACTCCCAGCAGATC | + |
|
Preference number: 6 (lower is better) Translates to: PGRCPWPQGDGL*WPQVFCNSQQI Trigger: GATCTGCTGGGAGTTGCAGAACACCTGAGGCCATCAGAGCCCATCACCTTGGGGCCAGGGGCATCTGCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS TCA 72 bp | AGACCAGCTGCCAGGCAGATGCCCCTGGCCCCAAGGTaGTGGGCTCTGATGGCCTCAGGTGTTCTGCAACTC | + |
|
Preference number: 6 (lower is better) Translates to: RPAARQMPLAPR*WALMASGVLQL Trigger: GAGTTGCAGAACACCTGAGGCCATCAGAGCCCATCACCTTGGGGCCAGGGGCATCTGCCTGGCAGCTGGTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CAA 72 bp | GATGATTCTGGAGGGGGCCACGCCCAAGCCCAGCACTaGTTCCAGCTCTCCCTGGCTGGCACAGTCAAAGCC | + |
|
Preference number: 6 (lower is better) Translates to: DDSGGGHAQAQH*FQLSLAGTVKA Trigger: GGCTTTGACTGTGCCAGCCAGGGAGAGCTGGAACAAGTGCTGGGCTTGGGCGTGGCCCCCTCCAGAATCATC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CAA 90 bp | GGGAAGCCCCCTCCAAGATCCAGGAGGCTCATGTGGTGGCCAGCCTaGCAGCCCATCTCAAACACACGATGGCAGTCAGCGATGGCCTGT | + |
|
Preference number: 6 (lower is better) Translates to: GKPPPRSRRLMWWPA*QPISNTRWQSAMAC Trigger: ACAGGCCATCGCTGACTGCCATCGTGTGTTTGAGATGGGCTGCAAGGCTGGCCACCACATGAGCCTCCTGGATCTTGGAGGGGGCTTCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS GCA 72 bp | GACGAGCAGCACCCAGGGGTTGCTGTTACACTTGACTaGATAGAAGGGCTGGACTCTGGGCAGGGCCTGGAG | + |
|
Preference number: 6 (lower is better) Translates to: DEQHPGVAVTLD*IEGLDSGQGLE Trigger: CTCCAGGCCCTGCCCAGAGTCCAGCCCTTCTATGCAGTCAAGTGTAACAGCAACCCCTGGGTGCTGCTCGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS GCA 72 bp | ATTGTCGAAGGTCAGAAGCTGCACCCCACAGCGGGCTaGGAACTGGATGTGGGAGACGGCCTTGCAGGGGTT | + |
|
Preference number: 6 (lower is better) Translates to: IVEGQKLHPTAG*ELDVGDGLAGV Trigger: AACCCCTGCAAGGCCGTCTCCCACATCCAGTTCGCAGCCCGCTGTGGGGTGCAGCTTCTGACCTTCGACAAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CCA 72 bp | AGAAGCTGCACCCCACAGCGGGCTGCGAACTGGATGTaGGAGACGGCCTTGCAGGGGTTGGCGAAGATGATT | + |
|
Preference number: 6 (lower is better) Translates to: RSCTPQRAANWM*ETALQGLAKMI Trigger: AATCATCTTCGCCAACCCCTGCAAGGCCGTCTCCCACATCCAGTTCGCAGCCCGCTGTGGGGTGCAGCTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CCA 72 bp | CCTGGGAAGCCCCCTCCAAGATCCAGGAGGCTCATGTaGTGGCCAGCCTTGCAGCCCATCTCAAACACACGA | + |
|
Preference number: 6 (lower is better) Translates to: PGKPPPRSRRLM*WPALQPISNTR Trigger: TCGTGTGTTTGAGATGGGCTGCAAGGCTGGCCACCACATGAGCCTCCTGGATCTTGGAGGGGGCTTCCCAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CAA 90 bp | TCAGCCACCATGAAGGCATCTTGGCGGCCCGAGATGGACAACTCCTaGATCTTCTTCAAGACCAGCTGCCAGGCAGATGCCCCTGGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: SATMKASWRPEMDNS*IFFKTSCQADAPGP Trigger: GGGGCCAGGGGCATCTGCCTGGCAGCTGGTCTTGAAGAAGATCAAGGAGTTGTCCATCTCGGGCCGCCAAGATGCCTTCATGGTGGCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CAA 72 bp | GGGTGGTACCGGGCCAGCTTAATCAGTTCCTCCTCATaGTCGAAGGTCAGAAGCTGCACCCCACAGCGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: GWYRASLISSSS*SKVRSCTPQRA Trigger: AGCCCGCTGTGGGGTGCAGCTTCTGACCTTCGACAATGAGGAGGAACTGATTAAGCTGGCCCGGTACCACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CAA 72 bp | CCTCCAAGATCCAGGAGGCTCATGTGGTGGCCAGCCTaGCAGCCCATCTCAAACACACGATGGCAGTCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: PPRSRRLMWWPA*QPISNTRWQSA Trigger: CGCTGACTGCCATCGTGTGTTTGAGATGGGCTGCAAGGCTGGCCACCACATGAGCCTCCTGGATCTTGGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CAA 90 bp | TGCCTCCAGATGGGCTCCAAACTTGGTGTGCAGAGGGAAGGTGCTTaGACTGTCCAGGGTCTGTATCCGGAGAACCAGCCTAGCCCTCGG | + |
|
Preference number: 6 (lower is better) Translates to: CLQMGSKLGVQREGA*TVQGLYPENQPSPR Trigger: CCGAGGGCTAGGCTGGTTCTCCGGATACAGACCCTGGACAGTCAAAGCACCTTCCCTCTGCACACCAAGTTTGGAGCCCATCTGGAGGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS GCA 72 bp | CTCCAAGATCCAGGAGGCTCATGTGGTGGCCAGCCTTaGAGCCCATCTCAAACACACGATGGCAGTCAGCGA | + |
|
Preference number: 6 (lower is better) Translates to: LQDPGGSCGGQP*SPSQTHDGSQR Trigger: TCGCTGACTGCCATCGTGTGTTTGAGATGGGCTGCAAGGCTGGCCACCACATGAGCCTCCTGGATCTTGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CCA 72 bp | TGCAGCCCATCTCAAACACACGATGGCAGTCAGCGATaGCCTGTCTGTAGCTCTCAGGTGTGTGGCAGTCGG | + |
|
Preference number: 6 (lower is better) Translates to: CSPSQTHDGSQR*PVCSSQVCGSR Trigger: CCGACTGCCACACACCTGAGAGCTACAGACAGGCCATCGCTGACTGCCATCGTGTGTTTGAGATGGGCTGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS CAA 90 bp | ATGGCGGCTGACCAGCACATCCAGGTCAGCCACCATGAAGGCATCTaGGCGGCCCGAGATGGACAACTCCTTGATCTTCTTCAAGACCAG | + |
|
Preference number: 6 (lower is better) Translates to: MAADQHIQVSHHEGI*AARDGQLLDLLQDQ Trigger: CTGGTCTTGAAGAAGATCAAGGAGTTGTCCATCTCGGGCCGCCAAGATGCCTTCATGGTGGCTGACCTGGATGTGCTGGTCAGCCGCCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
||
| CDS TCA 72 bp | CCTTCACCACTATGGGTATCCTGGGGACAGGGTCCCTaGGGAAGAGTCGGAAGACTCCATAATGGCCCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: PSPLWVSWGQGP*GRVGRLHNGPH Trigger: ATGAGGGCCATTATGGAGTCTTCCGACTCTTCCTCAGGGACCCTGTCCCCAGGATACCCATAGTGGTGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS GCA 72 bp | TTAATCAGTTCCTCCTCATTGTCGAAGGTCAGAAGCTaGACCCCACAGCGGGCTGCGAACTGGATGTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: LISSSSLSKVRS*TPQRAANWMWE Trigger: CTCCCACATCCAGTTCGCAGCCCGCTGTGGGGTGCAGCTTCTGACCTTCGACAATGAGGAGGAACTGATTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS GCA 72 bp | CCAGATGGGCTCCAAACTTGGTGTGCAGAGGGAAGGTaGTTTGACTGTCCAGGGTCTGTATCCGGAGAACCA | + |
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Preference number: 6 (lower is better) Translates to: PDGLQTWCAEGR*FDCPGSVSGEP Trigger: TGGTTCTCCGGATACAGACCCTGGACAGTCAAAGCACCTTCCCTCTGCACACCAAGTTTGGAGCCCATCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS CCA 72 bp | ACCAGCACATCCAGGTCAGCCACCATGAAGGCATCTTaGCGGCCCGAGATGGACAACTCCTTGATCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: TSTSRSATMKAS*RPEMDNSLIFF Trigger: GAAGAAGATCAAGGAGTTGTCCATCTCGGGCCGCCAAGATGCCTTCATGGTGGCTGACCTGGATGTGCTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS CCA 72 bp | CACCTCCTCAAATTTGGCTTCAGAGCCCTTAACTCCTaGGAAGCCCCCTCCAAGATCCAGGAGGCTCATGTG | + |
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Preference number: 6 (lower is better) Translates to: HLLKFGFRALNS*EAPSKIQEAHV Trigger: CACATGAGCCTCCTGGATCTTGGAGGGGGCTTCCCAGGAGTTAAGGGCTCTGAAGCCAAATTTGAGGAGGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS CAA 72 bp | GACCAGCACATCCAGGTCAGCCACCATGAAGGCATCTaGGCGGCCCGAGATGGACAACTCCTTGATCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: DQHIQVSHHEGI*AARDGQLLDLL Trigger: AAGAAGATCAAGGAGTTGTCCATCTCGGGCCGCCAAGATGCCTTCATGGTGGCTGACCTGGATGTGCTGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS CAA 72 bp | ATGGGCTCCAAACTTGGTGTGCAGAGGGAAGGTGCTTaGACTGTCCAGGGTCTGTATCCGGAGAACCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: MGSKLGVQREGA*TVQGLYPENQP Trigger: AGGCTGGTTCTCCGGATACAGACCCTGGACAGTCAAAGCACCTTCCCTCTGCACACCAAGTTTGGAGCCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS GCA 72 bp | GCTCCTGAGTTGGGGGCTCATGGCATCATAGACAGTTaGGATCGGGAAGCCATTGAAGGTGGAACTCATGGA | + |
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Preference number: 6 (lower is better) Translates to: APELGAHGIIDS*DREAIEGGTHG Trigger: TCCATGAGTTCCACCTTCAATGGCTTCCCGATCGCAACTGTCTATGATGCCATGAGCCCCCAACTCAGGAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS TCA 72 bp | TCATGGCATCATAGACAGTTGCGATCGGGAAGCCATTaGAGGTGGAACTCATGGAGCTACTGTAGGCACCCA | + |
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Preference number: 6 (lower is better) Translates to: SWHHRQLRSGSH*RWNSWSYCRHP Trigger: TGGGTGCCTACAGTAGCTCCATGAGTTCCACCTTCAATGGCTTCCCGATCGCAACTGTCTATGATGCCATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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| CDS CAA 72 bp | AGCTTCCTGTGGCCTCCTGGATCTAGGGAAGACTTCTaGACTATGATATTCACAGCAGCTGTGCACACGGAC | + |
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Preference number: 6 (lower is better) Translates to: SFLWPPGSREDF*TMIFTAAVHTD Trigger: GTCCGTGTGCACAGCTGCTGTGAATATCATAGTCAAGAAGTCTTCCCTAGATCCAGGAGGCCACAGGAAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023884.7 |
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