Pregenerated sensors for LCTL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032401Ensembl transcript IDs: ENSMUST00000034969.14, ENSMUST00000118215.3, ENSMUST00000124020.8
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGCGCAGACTGTGGGGACCACAATCTCTGAAGCCACGTGCATGTaGCTAAGCAAGGGCTCTGTGGCAAGCATCTGGTTGTTGATGGAG | + |
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Preference number: 1 (lower is better) Translates to: RAQTVGTTISEATCM*LSKGSVASIWLLME Trigger: CTCCATCAACAACCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGTGGCTTCAGAGATTGTGGTCCCCACAGTCTGCGCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR GCA 90 bp | ATGGAGAGGGCGCAGACTGTGGGGACCACAATCTCTGAAGCCACGTaGATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGTTGTTG | + |
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Preference number: 1 (lower is better) Translates to: MERAQTVGTTISEAT*MCLSKGSVASIWLL Trigger: CAACAACCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGTGGCTTCAGAGATTGTGGTCCCCACAGTCTGCGCCCTCTCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CCA 90 bp | CCCACGGCACAGAATAGAGCCATGGGGATCCCATTTCTGGCCAGTTaGGGTCCACAAGCTCCACTAAGTCACGGTCATTCTGGTAGCTGG | + |
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Preference number: 1 (lower is better) Translates to: PTAQNRAMGIPFLAS*GPQAPLSHGHSGSW Trigger: CCAGCTACCAGAATGACCGTGACTTAGTGGAGCTTGTGGACCCCAACTGGCCAGAAATGGGATCCCCATGGCTCTATTCTGTGCCGTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR TCA 90 bp | TGGGGCGCTCCACTTTCTGTCACATATATGGGAGGGTCACCGTACTaGGTCTGGGCAAAGTTGAGAAGCCTCCTGAATCCCCACGGCACA | + |
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Preference number: 1 (lower is better) Translates to: WGAPLSVTYMGGSPY*VWAKLRSLLNPHGT Trigger: TGTGCCGTGGGGATTCAGGAGGCTTCTCAACTTTGCCCAGACTCAGTACGGTGACCCTCCCATATATGTGACAGAAAGTGGAGCGCCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CCA 90 bp | GGAGCAAGTTTCCAAGGCTTTGAGACGCCAACTTTCCACCTCTTGTaGGTTTGGGAACCCACTGGCTGTGATGATCTCCTTGTAATACTG | + |
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Preference number: 1 (lower is better) Translates to: GASFQGFETPTFHLL*VWEPTGCDDLLVIL Trigger: CAGTATTACAAGGAGATCATCACAGCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGTTGGCGTCTCAAAGCCTTGGAAACTTGCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CCA 90 bp | AGTTTCCAAGGCTTTGAGACGCCAACTTTCCACCTCTTGTGGGTTTaGGAACCCACTGGCTGTGATGATCTCCTTGTAATACTGCACAGA | + |
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Preference number: 1 (lower is better) Translates to: SFQGFETPTFHLLWV*EPTGCDDLLVILHR Trigger: TCTGTGCAGTATTACAAGGAGATCATCACAGCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGTTGGCGTCTCAAAGCCTTGGAAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR TCA 90 bp | TTGATGTATCCTTTGAGGTACTGGATTCTCCACTCATCGCAGAACTaGGTGCAATGTAACTTTTGGGGCGCTCCACTTTCTGTCACATAT | + |
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Preference number: 1 (lower is better) Translates to: LMYPLRYWILHSSQN*VQCNFWGAPLSVTY Trigger: ATATGTGACAGAAAGTGGAGCGCCCCAAAAGTTACATTGCACTCAGTTCTGCGATGAGTGGAGAATCCAGTACCTCAAAGGATACATCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR TCA 90 bp | AATACTGCACAGAAGCCTTGGGATAGCGAGGCTTGTTTCTCACATTaGATTCAACATAGTAGAATCCATATTTATCTGCATAGCCTTTCT | + |
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Preference number: 1 (lower is better) Translates to: NTAQKPWDSEACFSH*IQHSRIHIYLHSLS Trigger: AGAAAGGCTATGCAGATAAATATGGATTCTACTATGTTGAATTCAATGTGAGAAACAAGCCTCGCTATCCCAAGGCTTCTGTGCAGTATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR CCA 90 bp | ATCTCTGAAGCCACGTGCATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGCCTGCAGGGAGAACGTaGGCAACCTCGACATCTCCA | + |
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Preference number: 2 (lower is better) Translates to: ISEATCMCLSKGSVASIWPAGRT*ATSTSP Trigger: TGGAGATGTCGAGGTTGCCCACGTTCTCCCTGCAGG...CCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGTGGCTTCAGAGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR TCA 90 bp | ACGCCAACTTTCCACCTCTTGTGGGTTTGGGAACCCACTGGCTGTGATGATCTCGGAGGGTCACCGTACTaGGTCTGGGCAAAGTTGAGA | + |
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Preference number: 2 (lower is better) Translates to: TPTFHLLWVWEPTGCDDLGGSPY*VWAKLR Trigger: TCTCAACTTTGCCCAGACTCAGTACGGTGACCCTCC...GAGATCATCACAGCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGTTGGCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR CCA 90 bp | GCCATGGGGATCCCATTTCTGGCCAGTTGGGGTCCACAAGCTCCACTAAGTCACTATCGAGTGGTAAAATaGCCCAGGCCCAGGAAGTCA | + |
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Preference number: 2 (lower is better) Translates to: AMGIPFLASWGPQAPLSHYRVVK*PRPRKS Trigger: TGACTTCCTGGGCCTGGGCCATTTTACCACTCGATA...GTGACTTAGTGGAGCTTGTGGACCCCAACTGGCCAGAAATGGGATCCCCATGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CAA 90 bp | GCCACGTGCATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGTaGTTGATGGAGCAAGTTTCCAAGGCTTTGAGACGCCAACTTTCC | + |
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Preference number: 2 (lower is better) Translates to: ATCMCLSKGSVASIW*LMEQVSKALRRQLS Trigger: GGAAAGTTGGCGTCTCAAAGCCTTGGAAACTTGCTCCATCAACAACCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR CCA 90 bp | ATCTCTGAAGCCACGTGCATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGCACAGAATAGAGCCATaGGGATCCCATTTCTGGCCA | + |
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Preference number: 2 (lower is better) Translates to: ISEATCMCLSKGSVASIWHRIEP*GSHFWP Trigger: TGGCCAGAAATGGGATCCCCATGGCTCTATTCTGTG...CCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGTGGCTTCAGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR CCA 90 bp | ATCTCTGAAGCCACGTGCATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGACTGCACAGAAGCCTTaGGATAGCGAGGCTTGTTTC | + |
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Preference number: 2 (lower is better) Translates to: ISEATCMCLSKGSVASIWTAQKP*DSEACF Trigger: GAAACAAGCCTCGCTATCCCAAGGCTTCTGTGCAGT...CCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGTGGCTTCAGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR CCA 90 bp | GTGCATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGTTGTTGATGGAGCAACTTTCCACCTCTTGTaGGTTTGGGAACCCACTGGC | + |
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Preference number: 2 (lower is better) Translates to: VHVPKQGLCGKHLVVDGATFHLL*VWEPTG Trigger: GCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGT...TGCTCCATCAACAACCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CAA 90 bp | ACGTGCATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGTTGTaGATGGAGCAAGTTTCCAAGGCTTTGAGACGCCAACTTTCCACC | + |
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Preference number: 2 (lower is better) Translates to: TCMCLSKGSVASIWL*MEQVSKALRRQLST Trigger: GGTGGAAAGTTGGCGTCTCAAAGCCTTGGAAACTTGCTCCATCAACAACCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR TCA 90 bp | GGTACTGGATTCTCCACTCATCGCAGAACTGAGTGCAATGTAACTTTTGGGGCGCCTGAAGAGATGCTTTaGCAGATGAAGGTGGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: GTGFSTHRRTECNVTFGAPEEML*QMKVER Trigger: CCTCTCCACCTTCATCTGTCAAAGCATCTCTTCAGG...CGCCCCAAAAGTTACATTGCACTCAGTTCTGCGATGAGTGGAGAATCCAGTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR CCA 90 bp | ACGCCAACTTTCCACCTCTTGTGGGTTTGGGAACCCACTGGCTGTGATGATCTCCTCTTTGTTCCAATGTaGTCTTTCATGACTTGGGGG | + |
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Preference number: 2 (lower is better) Translates to: TPTFHLLWVWEPTGCDDLLFVPM*SFMTWG Trigger: CCCCCAAGTCATGAAAGACCACATTGGAACAAAGAG...GAGATCATCACAGCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGTTGGCGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR CCA 90 bp | GTGCATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGTTGTTGATGGAGCATATCCTTTGAGGTACTaGATTCTCCACTCATCGCAG | + |
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Preference number: 2 (lower is better) Translates to: VHVPKQGLCGKHLVVDGAYPLRY*ILHSSQ Trigger: CTGCGATGAGTGGAGAATCCAGTACCTCAAAGGATA...TGCTCCATCAACAACCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CAA 90 bp | GATGGAGCAAGTTTCCAAGGCTTTGAGACGCCAACTTTCCACCTCTaGTGGGTTTGGGAACCCACTGGCTGTGATGATCTCCTTGTAATA | + |
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Preference number: 2 (lower is better) Translates to: DGASFQGFETPTFHL*WVWEPTGCDDLLVI Trigger: TATTACAAGGAGATCATCACAGCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGTTGGCGTCTCAAAGCCTTGGAAACTTGCTCCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR TCA 90 bp | GCAAGCATCTGGTTGTTGATGGAGCAAGTTTCCAAGGCTTTGAGACGCCAACTTCAATGTGGTCTTTCATaGCTTGGGGGTAGTCACCAG | + |
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Preference number: 2 (lower is better) Translates to: ASIWLLMEQVSKALRRQLQCGLS*LGGSHQ Trigger: CTGGTGACTACCCCCAAGTCATGAAAGACCACATTG...AAGTTGGCGTCTCAAAGCCTTGGAAACTTGCTCCATCAACAACCAGATGCTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR TCA 90 bp | CCCACTGGCTGTGATGATCTCCTTGTAATACTGCACAGAAGCCTTGGGATAGCGAAAATAGACATCACGTaGACTTCTGCAGCAGAAAAG | + |
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Preference number: 2 (lower is better) Translates to: PTGCDDLLVILHRSLGIAKIDIT*TSAAEK Trigger: CTTTTCTGCTGCAGAAGTTCACGTGATGTCTATTTT...CGCTATCCCAAGGCTTCTGTGCAGTATTACAAGGAGATCATCACAGCCAGTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR TCA 90 bp | AACTTATCCAACAGAGACCAGGAAGTATACCCTTTTATATCCACGCCATCTTTTAGATGCTTTGACAGATaGAGGTGGAGAGGAGATCCC | + |
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Preference number: 2 (lower is better) Translates to: NLSNRDQEVYPFISTPSFRCFDR*RWRGDP Trigger: GGGATCTCCTCTCCACCTTCATCTGTCAAAGCATCT...AAAAGATGGCGTGGATATAAAAGGGTATACTTCCTGGTCTCTGTTGGATAAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR TCA 72 bp | GATGGAGAGGGCGCAGACTGTGGGGACCACAATCTCTaGAGCCACGTGCATGTGCCTAAGCAAGGGCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: DGEGADCGDHNL*SHVHVPKQGLC Trigger: ACAGAGCCCTTGCTTAGGCACATGCACGTGGCTTCAGAGATTGTGGTCCCCACAGTCTGCGCCCTCTCCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR GCA 72 bp | GCGCAGACTGTGGGGACCACAATCTCTGAAGCCACGTaGATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATC | + |
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Preference number: 3 (lower is better) Translates to: AQTVGTTISEAT*MCLSKGSVASI Trigger: GATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGTGGCTTCAGAGATTGTGGTCCCCACAGTCTGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CCA 72 bp | AAGCCTCCTGAATCCCCACGGCACAGAATAGAGCCATaGGGATCCCATTTCTGGCCAGTTGGGGTCCACAAG | + |
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Preference number: 3 (lower is better) Translates to: KPPESPRHRIEP*GSHFWPVGVHK Trigger: CTTGTGGACCCCAACTGGCCAGAAATGGGATCCCCATGGCTCTATTCTGTGCCGTGGGGATTCAGGAGGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR CAA 90 bp | GTGCATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGTTGTTGATGGAGCACGACATCTCCAGGCCTaGCTCGGCACTCTTTGTTCC | + |
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Preference number: 3 (lower is better) Translates to: VHVPKQGLCGKHLVVDGARHLQA*LGTLCS Trigger: GGAACAAAGAGTGCCGAGCAAGGCCTGGAGATGTCG...TGCTCCATCAACAACCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR GCA 72 bp | ACTGTGGGGACCACAATCTCTGAAGCCACGTGCATGTaGCTAAGCAAGGGCTCTGTGGCAAGCATCTGGTTG | + |
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Preference number: 3 (lower is better) Translates to: TVGTTISEATCM*LSKGSVASIWL Trigger: CAACCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGTGGCTTCAGAGATTGTGGTCCCCACAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR GCA 72 bp | AGGGAGAACGTGGGCAACCTCGACATCTCCAGGCCTTaGTCGGCACTCTTTGTTCCAATGTGGTCTTTCATG | + |
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Preference number: 3 (lower is better) Translates to: RENVGNLDISRP*SALFVPMWSFM Trigger: CATGAAAGACCACATTGGAACAAAGAGTGCCGAGCAAGGCCTGGAGATGTCGAGGTTGCCCACGTTCTCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR CAA 90 bp | ATCTCTGAAGCCACGTGCATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGCAAGTTTCCAAGGCTTaGAGACGCCAACTTTCCACC | + |
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Preference number: 3 (lower is better) Translates to: ISEATCMCLSKGSVASIWQVSKA*RRQLST Trigger: GGTGGAAAGTTGGCGTCTCAAAGCCTTGGAAACTTG...CCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGTGGCTTCAGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR TCA 72 bp | CCACTTTCTGTCACATATATGGGAGGGTCACCGTACTaGGTCTGGGCAAAGTTGAGAAGCCTCCTGAATCCC | + |
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Preference number: 3 (lower is better) Translates to: PLSVTYMGGSPY*VWAKLRSLLNP Trigger: GGGATTCAGGAGGCTTCTCAACTTTGCCCAGACTCAGTACGGTGACCCTCCCATATATGTGACAGAAAGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CCA 72 bp | TTCCAAGGCTTTGAGACGCCAACTTTCCACCTCTTGTaGGTTTGGGAACCCACTGGCTGTGATGATCTCCTT | + |
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Preference number: 3 (lower is better) Translates to: FQGFETPTFHLL*VWEPTGCDDLL Trigger: AAGGAGATCATCACAGCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGTTGGCGTCTCAAAGCCTTGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CCA 72 bp | GGCTTTGAGACGCCAACTTTCCACCTCTTGTGGGTTTaGGAACCCACTGGCTGTGATGATCTCCTTGTAATA | + |
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Preference number: 3 (lower is better) Translates to: GFETPTFHLLWV*EPTGCDDLLVI Trigger: TATTACAAGGAGATCATCACAGCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGTTGGCGTCTCAAAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR TCA 72 bp | CCTTTGAGGTACTGGATTCTCCACTCATCGCAGAACTaGGTGCAATGTAACTTTTGGGGCGCTCCACTTTCT | + |
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Preference number: 3 (lower is better) Translates to: PLRYWILHSSQN*VQCNFWGAPLS Trigger: AGAAAGTGGAGCGCCCCAAAAGTTACATTGCACTCAGTTCTGCGATGAGTGGAGAATCCAGTACCTCAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR CAA 90 bp | AGCCTTGGGATAGCGAGGCTTGTTTCTCACATTGAATTCAACATAGTAGAATCCGTGGTCTTTCATGACTaGGGGGTAGTCACCAGCGTA | + |
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Preference number: 3 (lower is better) Translates to: SLGIARLVSHIEFNIVESVVFHD*GVVTSV Trigger: TACGCTGGTGACTACCCCCAAGTCATGAAAGACCAC...GGATTCTACTATGTTGAATTCAATGTGAGAAACAAGCCTCGCTATCCCAAGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR-3UTR CAA 90 bp | AGCCTTGGGATAGCGAGGCTTGTTTCTCACATTGAATTCAACATAGTAGAATCCCTTGCTCGGCACTCTTaGTTCCAATGTGGTCTTTCA | + |
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Preference number: 3 (lower is better) Translates to: SLGIARLVSHIEFNIVESLARHS*FQCGLS Trigger: TGAAAGACCACATTGGAACAAAGAGTGCCGAGCAAG...GGATTCTACTATGTTGAATTCAATGTGAGAAACAAGCCTCGCTATCCCAAGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR CCA 90 bp | TTCTCCTGCAGGGAGAACGTGGGCAACCTCGACATCTCCAGGCCTTGCTCGGCATATAGGCCAGTGCCCTaGAGCCTCAGGCCTGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: FSCRENVGNLDISRPCSAYRPVP*SLRPGA Trigger: CGCACCAGGCCTGAGGCTCCAGGGCACTGGCCTATA...TGCCGAGCAAGGCCTGGAGATGTCGAGGTTGCCCACGTTCTCCCTGCAGGAGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR GCA 90 bp | ACGCCAACTTTCCACCTCTTGTGGGTTTGGGAACCCACTGGCTGTGATGATCTCTCTGGTAGGCAGAACTaGCCACGCCCCAGGAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: TPTFHLLWVWEPTGCDDLSGRQN*PRPRRS Trigger: GCTTCTCCTGGGGCGTGGGCAGTTCTGCCTACCAGA...GAGATCATCACAGCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGTTGGCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR GCA 90 bp | ATCTCTGAAGCCACGTGCATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGCCCATCCTCGTCCCATaGACCTTCTGTCTGGTAGGC | + |
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Preference number: 4 (lower is better) Translates to: ISEATCMCLSKGSVASIWPILVP*TFCLVG Trigger: GCCTACCAGACAGAAGGTGCATGGGACGAGGATGGG...CCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGTGGCTTCAGAGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR GCA 90 bp | ACGCCAACTTTCCACCTCTTGTGGGTTTGGGAACCCACTGGCTGTGATGATCTCGGTAGGTCCCAGTGGTaGAAGGTCACAACGGGGGTG | + |
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Preference number: 4 (lower is better) Translates to: TPTFHLLWVWEPTGCDDLGRSQW*KVTTGV Trigger: CACCCCCGTTGTGACCTTGCACCACTGGGACCTACC...GAGATCATCACAGCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGTTGGCGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR GCA 90 bp | TTTCTGGCCAGTTGGGGTCCACAAGCTCCACTAAGTCACGGTCATTCTGGTAGCCCACATATAGGCCAGTaGCCTGGAGCCTCAGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: FLASWGPQAPLSHGHSGSPHIGQ*PGASGL Trigger: CAGGCCTGAGGCTCCAGGGCACTGGCCTATATGTGG...GCTACCAGAATGACCGTGACTTAGTGGAGCTTGTGGACCCCAACTGGCCAGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR CCA 90 bp | ATCTCTGAAGCCACGTGCATGTGCCTAAGCAAGGGCTCTGTGGCAAGCATCTGGGAAGGATGCCTCTTCTaGGGGTCCTCTCCAGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: ISEATCMCLSKGSVASIWEGCLF*GSSPGS Trigger: ACTGCCTGGAGAGGACCCCCAGAAGAGGCATCCTTC...CCAGATGCTTGCCACAGAGCCCTTGCTTAGGCACATGCACGTGGCTTCAGAGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR CCA 90 bp | TTTCTGGCCAGTTGGGGTCCACAAGCTCCACTAAGTCACGGTCATTCTGGTAGCAGGCATCCCAGATGCTaGGCCCTTTCCCATCCTCGT | + |
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Preference number: 4 (lower is better) Translates to: FLASWGPQAPLSHGHSGSRHPRC*ALSHPR Trigger: ACGAGGATGGGAAAGGGCCCAGCATCTGGGATGCCT...GCTACCAGAATGACCGTGACTTAGTGGAGCTTGTGGACCCCAACTGGCCAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR CCA 90 bp | TTTCTGGCCAGTTGGGGTCCACAAGCTCCACTAAGTCACGGTCATTCTGGTAGCCCGCCGTATGCTACCTaGAGCATCTGTGGTAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: FLASWGPQAPLSHGHSGSPPYAT*SICGRS Trigger: GGACCTACCACAGATGCTCCAGGTAGCATACGGCGG...GCTACCAGAATGACCGTGACTTAGTGGAGCTTGTGGACCCCAACTGGCCAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR GCA 90 bp | GCCATGGGGATCCCATTTCTGGCCAGTTGGGGTCCACAAGCTCCACTAAGTCACCTGAATGTGAGCCAATaGTTCACTCGGTCCCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: AMGIPFLASWGPQAPLSHLNVSQ*FTRSPK Trigger: CTTTGGGGACCGAGTGAAGCATTGGCTCACATTCAG...GTGACTTAGTGGAGCTTGTGGACCCCAACTGGCCAGAAATGGGATCCCCATGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR TCA 90 bp | AGCCTTGGGATAGCGAGGCTTGTTTCTCACATTGAATTCAACATAGTAGAATCCTCACCTGTTCAGCTCTaGCCCCCGTGGGCAGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: SLGIARLVSHIEFNIVESSPVQL*PPWAGA Trigger: GGCTCCTGCCCACGGGGGTCAGAGCTGAACAGGTGA...GGATTCTACTATGTTGAATTCAATGTGAGAAACAAGCCTCGCTATCCCAAGGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR GCA 90 bp | AACTGTAGGTATCGCTCAGCAGCCTCAATATCGTCGGGGTTGTCGATGTCCACATCCATAGTAGAAGGATaGCTCTTCTGGGGGTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: NCRYRSAASISSGLSMSTSIVEG*LFWGSS Trigger: AGAGGACCCCCAGAAGAGGCATCCTTCTACTATGGA...TGTGGACATCGACAACCCCGACGATATTGAGGCTGCTGAGCGATACCTACAGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CAA 72 bp | AGTTTCCAAGGCTTTGAGACGCCAACTTTCCACCTCTaGTGGGTTTGGGAACCCACTGGCTGTGATGATCTC | + |
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Preference number: 4 (lower is better) Translates to: SFQGFETPTFHL*WVWEPTGCDDL Trigger: GAGATCATCACAGCCAGTGGGTTCCCAAACCCACAAGAGGTGGAAAGTTGGCGTCTCAAAGCCTTGGAAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR TCA 90 bp | GCCATGGGGATCCCATTTCTGGCCAGTTGGGGTCCACAAGCTCCACTAAGTCACAATCGCTGTAGAATTTaGTTCCTCTCTTGTTCACCT | + |
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Preference number: 4 (lower is better) Translates to: AMGIPFLASWGPQAPLSHNRCRI*FLSCSP Trigger: AGGTGAACAAGAGAGGAATCAAATTCTACAGCGATT...GTGACTTAGTGGAGCTTGTGGACCCCAACTGGCCAGAAATGGGATCCCCATGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CAA 72 bp | AGCATCTGGTTGTTGATGGAGCAAGTTTCCAAGGCTTaGAGACGCCAACTTTCCACCTCTTGTGGGTTTGGG | + |
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Preference number: 4 (lower is better) Translates to: SIWLLMEQVSKA*RRQLSTSCGFG Trigger: CCCAAACCCACAAGAGGTGGAAAGTTGGCGTCTCAAAGCCTTGGAAACTTGCTCCATCAACAACCAGATGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS-3UTR TCA 90 bp | CCCACTGGCTGTGATGATCTCCTTGTAATACTGCACAGAAGCCTTGGGATAGCGAAAATCGGTAGTGGCTaGCTTGTAGTTCCTTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: PTGCDDLLVILHRSLGIAKIGSG*LVVPSA Trigger: TGCTGAAGGAACTACAAGTCAGCCACTACCGATTTT...CGCTATCCCAAGGCTTCTGTGCAGTATTACAAGGAGATCATCACAGCCAGTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CAA 72 bp | CTCGGCACTCTTTGTTCCAATGTGGTCTTTCATGACTaGGGGGTAGTCACCAGCGTAAATAGGGTTGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: LGTLCSNVVFHD*GVVTSVNRVGK Trigger: TTTGCCAACCCTATTTACGCTGGTGACTACCCCCAAGTCATGAAAGACCACATTGGAACAAAGAGTGCCGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| 3UTR CAA 72 bp | ATATCCACGCCATCTTTTATAGCTTTTAACATTTCATaGATGTATCCTTTGAGGTACTGGATTCTCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: ISTPSFIAFNIS*MYPLRYWILHS Trigger: TGAGTGGAGAATCCAGTACCTCAAAGGATACATCAATGAAATGTTAAAAGCTATAAAAGATGGCGTGGATAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS TCA 90 bp | CCGTGGGCAGGAGCCGCGGCCAAGACAGGGAAAATCGGTAGTGGCTaGCTTGTAGTTCCTTCAGCAGGGCAATGTCCTCCTGAACTTTAT | + |
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Preference number: 5 (lower is better) Translates to: PWAGAAAKTGKIGSG*LVVPSAGQCPPELY Trigger: ATAAAGTTCAGGAGGACATTGCCCTGCTGAAGGAACTACAAGTCAGCCACTACCGATTTTCCCTGTCTTGGCCGCGGCTCCTGCCCACGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034969.14 ENSMUST00000124020.8 |
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| CDS GCA 90 bp | CCCAGTCACAGTTCAGTGAGATCCCTACTAGGCCGTGCTGTTTGCTaGGCCACGTGTTATTATAAGAATGCCAAGCCTGGGCGTGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: PSHSSVRSLLGRAVC*ATCYYKNAKPGRGP Trigger: AGGCCCACGCCCAGGCTTGGCATTCTTATAATAACACGTGGCGCAGCAAACAGCACGGCCTAGTAGGGATCTCACTGAACTGTGACTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034969.14 ENSMUST00000118215.3 |
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| CDS-3UTR CAA 90 bp | TTCTCCTGCAGGGAGAACGTGGGCAACCTCGACATCTCCAGGCCTTGCTCGGCAAATTTGATTCCTCTCTaGTTCACCTGTTCAGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: FSCRENVGNLDISRPCSANLIPL*FTCSAL Trigger: CAGAGCTGAACAGGTGAACAAGAGAGGAATCAAATT...TGCCGAGCAAGGCCTGGAGATGTCGAGGTTGCCCACGTTCTCCCTGCAGGAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124020.8 |
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| CDS TCA 90 bp | TCACTCGGTCCCCAAAGACCTCAAAGCATAGGTCAGCATAGTCACTaGAGTATCGGGTCATACTCACATTCTGCCACCCGCCGTATGCTA | + |
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Preference number: 5 (lower is better) Translates to: SLGPQRPQSIGQHSH*SIGSYSHSATRRML Trigger: TAGCATACGGCGGGTGGCAGAATGTGAGTATGACCCGATACTTCAGTGACTATGCTGACCTATGCTTTGAGGTCTTTGGGGACCGAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034969.14 ENSMUST00000118215.3 ENSMUST00000124020.8 |
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| CDS CCA 72 bp | ATGATATGGTGTGCAGCCACATATAGGCCAGTGCCCTaGAGCCTCAGGCCTGGTGCGTGGAGACCGGTCTCA | + |
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Preference number: 6 (lower is better) Translates to: MIWCAATYRPVP*SLRPGAWRPVS Trigger: TGAGACCGGTCTCCACGCACCAGGCCTGAGGCTCCAGGGCACTGGCCTATATGTGGCTGCACACCATATCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034969.14 ENSMUST00000118215.3 ENSMUST00000124020.8 |
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| CDS CAA 90 bp | GGAGATCCCGTCTCAGCCACGTCTCCTGTGGCAAGCATCTGGTTGTaGATGGAGCAAGTTTCCAAGGCTTTGAGACGCCAACTTTCCACC | + |
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Preference number: 6 (lower is better) Translates to: GDPVSATSPVASIWL*MEQVSKALRRQLST Trigger: GGTGGAAAGTTGGCGTCTCAAAGCCTTGGAAACTTGCTCCATCAACAACCAGATGCTTGCCACAGGAGACGTGGCTGAGACGGGATCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118215.3 |
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| CDS CAA 90 bp | AGAGGAGATCCCGTCTCAGCCACGTCTCCTGTGGCAAGCATCTGGTaGTTGATGGAGCAAGTTTCCAAGGCTTTGAGACGCCAACTTTCC | + |
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Preference number: 6 (lower is better) Translates to: RGDPVSATSPVASIW*LMEQVSKALRRQLS Trigger: GGAAAGTTGGCGTCTCAAAGCCTTGGAAACTTGCTCCATCAACAACCAGATGCTTGCCACAGGAGACGTGGCTGAGACGGGATCTCCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118215.3 |
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| CDS GCA 72 bp | TCTACCATTGTCCGAGGATCACTGAATGTGAGCCAATaGTTCACTCGGTCCCCAAAGACCTCAAAGCATAGG | + |
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Preference number: 6 (lower is better) Translates to: STIVRGSLNVSQ*FTRSPKTSKHR Trigger: CCTATGCTTTGAGGTCTTTGGGGACCGAGTGAAGCATTGGCTCACATTCAGTGATCCTCGGACAATGGTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034969.14 ENSMUST00000118215.3 ENSMUST00000124020.8 |
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