Pregenerated sensors for LCN9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023210Ensembl transcript IDs: ENSMUST00000023978.3
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACCACAGGCCAGCATCAGAAAGAAAGAGGATGCCCAATGCTGGCCAGCATCAGATGGATCTCAACTCTCTaGGGTGCAAAGCAGAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: TTGQHQKERGCPMLASIRWISTL*GAKQKA Trigger: GGCCTTCTGCTTTGCACCCCAGAGAGTTGAGATCCA...TCTGATGCTGGCCAGCATTGGGCATCCTCTTTCTTTCTGATGCTGGCCTGTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| 3UTR-3UTR GCA 90 bp | AGAAAGAGGATGCCCAATGCTGGCCAGCATCAGAAAGAAAGAGGATGCCTAATGCTCAACTCTCTGGGGTaGAAAGCAGAAGGCCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: RKRMPNAGQHQKERGCLMLNSLG*KAEGLA Trigger: AGCCAGGCCTTCTGCTTTGCACCCCAGAGAGTTGAG...CATTAGGCATCCTCTTTCTTTCTGATGCTGGCCAGCATTGGGCATCCTCTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| 3UTR GCA 72 bp | ATGCCCAATGCTGGCCAGCATCAGAAAGAAAGAGGATaGCTAATGCTGTCTCCGCAGTGCCTGGATCTCAAC | + |
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Preference number: 3 (lower is better) Translates to: MPNAGQHQKERG*LMLSPQCLDLN Trigger: GTTGAGATCCAGGCACTGCGGAGACAGCATTAGGCATCCTCTTTCTTTCTGATGCTGGCCAGCATTGGGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| 3UTR GCA 72 bp | CAGAAAGAAAGAGGATGCCTAATGCTGTCTCCGCAGTaGCTGGATCTCAACTCTCTGGGGTGCAAAGCAGAA | + |
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Preference number: 3 (lower is better) Translates to: QKERGCLMLSPQ*LDLNSLGCKAE Trigger: TTCTGCTTTGCACCCCAGAGAGTTGAGATCCAGGCACTGCGGAGACAGCATTAGGCATCCTCTTTCTTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| 3UTR GCA 72 bp | GATATGACCACAGGCCAGCATCAGAAAGAAAGAGGATaGCCAATGCTGGCCAGCATCAGAAAGAAAGAGGAT | + |
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Preference number: 3 (lower is better) Translates to: DMTTGQHQKERG*PMLASIRKKED Trigger: ATCCTCTTTCTTTCTGATGCTGGCCAGCATTGGGCATCCTCTTTCTTTCTGATGCTGGCCTGTGGTCATATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| 3UTR TCA 72 bp | TTGGCAAAAGTCTTCATACATGAGTTAAGATCAGTTTaGATGTCTTGGTGGCTTAAATCTCATTGGCAGAGG | + |
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Preference number: 3 (lower is better) Translates to: LAKVFIHELRSV*MSWWLKSHWQR Trigger: CCTCTGCCAATGAGATTTAAGCCACCAAGACATTCAAACTGATCTTAACTCATGTATGAAGACTTTTGCCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS-3UTR GCA 90 bp | ACAGGCCAGCATCAGAAAGAAAGAGGATGCCCAATGCTGGCCAGCATCAGAAAGGTATGCAGGTTGAACTaGGCAGTGGCCAGGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: TGQHQKERGCPMLASIRKVCRLN*AVARLS Trigger: GCTGAGCCTGGCCACTGCGCAGTTCAACCTGCATAC...CTTTCTGATGCTGGCCAGCATTGGGCATCCTCTTTCTTTCTGATGCTGGCCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS-3UTR TCA 90 bp | TCTCCGCAGTGCCTGGATCTCAACTCTCTGGGGTGCAAAGCAGAAGGCCTGGCTATTCTCCTTGCAACATaGAATGGAAGTCAAACTGCA | + |
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Preference number: 4 (lower is better) Translates to: SPQCLDLNSLGCKAEGLAILLAT*NGSQTA Trigger: TGCAGTTTGACTTCCATTTCATGTTGCAAGGAGAAT...AGCCAGGCCTTCTGCTTTGCACCCCAGAGAGTTGAGATCCAGGCACTGCGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS-3UTR TCA 90 bp | TCTCCGCAGTGCCTGGATCTCAACTCTCTGGGGTGCAAAGCAGAAGGCCTGGCTTTTTTGTCATGTCGATaGTATTTTGTGAGTCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SPQCLDLNSLGCKAEGLAFLSCR*YFVSPA Trigger: GGCTGGACTCACAAAATATCATCGACATGACAAAAA...AGCCAGGCCTTCTGCTTTGCACCCCAGAGAGTTGAGATCCAGGCACTGCGGAGA 51% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS-3UTR CCA 90 bp | GCATCAGAAAGAAAGAGGATGCCCAATGCTGGCCAGCATCAGAAAGAAAGAGGATCTTTTCACAGACCATaGTCACAGCTACACATTCTC | + |
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Preference number: 4 (lower is better) Translates to: ASERKRMPNAGQHQKERGSFHRP*SQLHIL Trigger: GAGAATGTGTAGCTGTGACCATGGTCTGTGAAAAGA...TCCTCTTTCTTTCTGATGCTGGCCAGCATTGGGCATCCTCTTTCTTTCTGATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS-3UTR GCA 90 bp | AGAAAGAGGATGCCCAATGCTGGCCAGCATCAGAAAGAAAGAGGATGCCTAATGGCTACACATTCTCCTTaGAACATGAAATGGAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: RKRMPNAGQHQKERGCLMATHSP*NMKWKS Trigger: TGACTTCCATTTCATGTTGCAAGGAGAATGTGTAGC...CATTAGGCATCCTCTTTCTTTCTGATGCTGGCCAGCATTGGGCATCCTCTTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS-3UTR CCA 90 bp | GAACCAAAGGAGGAACTTTATTTGGCAAAAGTCTTCATACATGAGTTAAGATCACCTTGCAACATGAAATaGAAGTCAAACTGCAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: EPKEELYLAKVFIHELRSPCNMK*KSNCRL Trigger: CAGCCTGCAGTTTGACTTCCATTTCATGTTGCAAGG...TGATCTTAACTCATGTATGAAGACTTTTGCCAAATAAAGTTCCTCCTTTGGTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS TCA 90 bp | AAATCCTGGCCAGGTTGTAGTCTCTCCGCACAGCAGTATGCAGGTTaGACTGCGCAGTGGCCAGGCTCAGCACCAGGCCCAGGACTAGTA | + |
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Preference number: 5 (lower is better) Translates to: KSWPGCSLSAQQYAG*TAQWPGSAPGPGLV Trigger: TACTAGTCCTGGGCCTGGTGCTGAGCCTGGCCACTGCGCAGTTCAACCTGCATACTGCTGTGCGGAGAGACTACAACCTGGCCAGGATTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS TCA 90 bp | GAAGAGCCTCAGGTCTCCATTTTCTTCAATGCGAGTCATGTTATCTaGGGCTATGGAATCGAGGTACCAGGTCCCGGAAATCCTGGCCAG | + |
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Preference number: 5 (lower is better) Translates to: EEPQVSIFFNASHVI*GYGIEVPGPGNPGQ Trigger: CTGGCCAGGATTTCCGGGACCTGGTACCTCGATTCCATAGCCTCAGATAACATGACTCGCATTGAAGAAAATGGAGACCTGAGGCTCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS-3UTR CAA 90 bp | AGGCCATGTGAAGACAGAGGCCTAGAGTACGGAGATATGACCACAGGCCAGCATCCGTTATTTAAGAGCTaGATGTTCCGGATGAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: RPCEDRGLEYGDMTTGQHPLFKS*MFRMKS Trigger: GCTCTTCATCCGGAACATCAAGCTCTTAAATAACGG...ATGCTGGCCTGTGGTCATATCTCCGTACTCTAGGCCTCTGTCTTCACATGGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS CCA 90 bp | TCAGGTCTCCATTTTCTTCAATGCGAGTCATGTTATCTGAGGCTATaGAATCGAGGTACCAGGTCCCGGAAATCCTGGCCAGGTTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: SGLHFLQCESCYLRL*NRGTRSRKSWPGCS Trigger: ACTACAACCTGGCCAGGATTTCCGGGACCTGGTACCTCGATTCCATAGCCTCAGATAACATGACTCGCATTGAAGAAAATGGAGACCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS-3UTR CAA 90 bp | GAACCAAAGGAGGAACTTTATTTGGCAAAAGTCTTCATACATGAGTTAAGATCAAGCTACACATTCTCCTaGCAACATGAAATGGAAGTC | + |
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Preference number: 5 (lower is better) Translates to: EPKEELYLAKVFIHELRSSYTFS*QHEMEV Trigger: GACTTCCATTTCATGTTGCAAGGAGAATGTGTAGCT...TGATCTTAACTCATGTATGAAGACTTTTGCCAAATAAAGTTCCTCCTTTGGTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS-3UTR CAA 90 bp | GAACCAAAGGAGGAACTTTATTTGGCAAAAGTCTTCATACATGAGTTAAGATCATCCAGCCCATATAGATaGCAGATGTTTTCAAATTCT | + |
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Preference number: 5 (lower is better) Translates to: EPKEELYLAKVFIHELRSSSPYR*QMFSNS Trigger: AGAATTTGAAAACATCTGCAATCTATATGGGCTGGA...TGATCTTAACTCATGTATGAAGACTTTTGCCAAATAAAGTTCCTCCTTTGGTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS CCA 72 bp | AGGCTATGGAATCGAGGTACCAGGTCCCGGAAATCCTaGCCAGGTTGTAGTCTCTCCGCACAGCAGTATGCA | + |
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Preference number: 6 (lower is better) Translates to: RLWNRGTRSRKS*PGCSLSAQQYA Trigger: TGCATACTGCTGTGCGGAGAGACTACAACCTGGCCAGGATTTCCGGGACCTGGTACCTCGATTCCATAGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS CAA 72 bp | GTCAAGCAGTATGGAGCGCCCATAGAGTGCCAGCACTaGGGTCTTGGTCCCATTCTTGATGTTCTGCATGTA | + |
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Preference number: 6 (lower is better) Translates to: VKQYGAPIECQH*GLGPILDVLHV Trigger: TACATGCAGAACATCAAGAATGGGACCAAGACCCAAGTGCTGGCACTCTATGGGCGCTCCATACTGCTTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS TCA 72 bp | CAGGTCTCCATTTTCTTCAATGCGAGTCATGTTATCTaGGGCTATGGAATCGAGGTACCAGGTCCCGGAAAT | + |
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Preference number: 6 (lower is better) Translates to: QVSIFFNASHVI*GYGIEVPGPGN Trigger: ATTTCCGGGACCTGGTACCTCGATTCCATAGCCTCAGATAACATGACTCGCATTGAAGAAAATGGAGACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS GCA 72 bp | TTTTCACAGACCATGGTCACAGCTACACATTCTCCTTaGAACATGAAATGGAAGTCAAACTGCAGGCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: FSQTMVTATHSP*NMKWKSNCRLP Trigger: CGGCAGCCTGCAGTTTGACTTCCATTTCATGTTGCAAGGAGAATGTGTAGCTGTGACCATGGTCTGTGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS CAA 72 bp | TGGAAGTCAAACTGCAGGCTGCCGTTATTTAAGAGCTaGATGTTCCGGATGAAGAGCCTCAGGTCTCCATTT | + |
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Preference number: 6 (lower is better) Translates to: WKSNCRLPLFKS*MFRMKSLRSPF Trigger: AAATGGAGACCTGAGGCTCTTCATCCGGAACATCAAGCTCTTAAATAACGGCAGCCTGCAGTTTGACTTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS CAA 72 bp | CTTTTCACAGACCATGGTCACAGCTACACATTCTCCTaGCAACATGAAATGGAAGTCAAACTGCAGGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: LFTDHGHSYTFS*QHEMEVKLQAA Trigger: GGCAGCCTGCAGTTTGACTTCCATTTCATGTTGCAAGGAGAATGTGTAGCTGTGACCATGGTCTGTGAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS TCA 72 bp | AGACCATGGTCACAGCTACACATTCTCCTTGCAACATaGAATGGAAGTCAAACTGCAGGCTGCCGTTATTTA | + |
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Preference number: 6 (lower is better) Translates to: RPWSQLHILLAT*NGSQTAGCRYL Trigger: TAAATAACGGCAGCCTGCAGTTTGACTTCCATTTCATGTTGCAAGGAGAATGTGTAGCTGTGACCATGGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS GCA 72 bp | ACACATTCTCCTTGCAACATGAAATGGAAGTCAAACTaGAGGCTGCCGTTATTTAAGAGCTTGATGTTCCGG | + |
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Preference number: 6 (lower is better) Translates to: THSPCNMKWKSN*RLPLFKSLMFR Trigger: CCGGAACATCAAGCTCTTAAATAACGGCAGCCTGCAGTTTGACTTCCATTTCATGTTGCAAGGAGAATGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS CCA 72 bp | ATGGTCACAGCTACACATTCTCCTTGCAACATGAAATaGAAGTCAAACTGCAGGCTGCCGTTATTTAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: MVTATHSPCNMK*KSNCRLPLFKS Trigger: GCTCTTAAATAACGGCAGCCTGCAGTTTGACTTCCATTTCATGTTGCAAGGAGAATGTGTAGCTGTGACCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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| CDS CAA 90 bp | AACATGAAATGGAAGTCAAACTGCAGGCTGCCGTTATTTAAGAGCTaGATGTTCCGGATGAAGAGCCTCAGGTCTCCATTTTCTTCAATG | + |
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Preference number: 6 (lower is better) Translates to: NMKWKSNCRLPLFKS*MFRMKSLRSPFSSM Trigger: CATTGAAGAAAATGGAGACCTGAGGCTCTTCATCCGGAACATCAAGCTCTTAAATAACGGCAGCCTGCAGTTTGACTTCCATTTCATGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023978.3 |
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