RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LCN8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036449

Ensembl transcript IDs: ENSMUST00000038482.7

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GAATTTATTTGGAGCAGATACAGAGGTTCTTCGGGCAGGAGCAGGAGAGGCCAGTCCGTGTCCAGCACGTaGATCTCCCTGTTACCAGGA +
Preference number: 4 (lower is better)
Translates to: EFIWSRYRGSSGRSRRGQSVSST*ISLLPG
Trigger: TCCTGGTAACAGGGAGATCCACGTGCTGGACACGGA...CTGGCCTCTCCTGCTCCTGCCCGAAGAACCTCTGTATCTGCTCCAAATAAATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS-3UTR TCA 90 bp GAATTTATTTGGAGCAGATACAGAGGTTCTTCGGGCAGGAGCAGGAGAGGCCAGCCCTCTACCCTCCTTTaGGCCTTCAGCACCAGTTTT +
Preference number: 4 (lower is better)
Translates to: EFIWSRYRGSSGRSRRGQPSTLL*AFSTSF
Trigger: AAAACTGGTGCTGAAGGCTCAAAGGAGGGTAGAGGG...CTGGCCTCTCCTGCTCCTGCCCGAAGAACCTCTGTATCTGCTCCAAATAAATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS-3UTR TCA 90 bp ATTTGGAGCAGATACAGAGGTTCTTCGGGCAGGAGCAGGAGAGGCCAGGTAGATTGTCACACAACTTCCTaGGCTGTTGTACACGGCTTT +
Preference number: 4 (lower is better)
Translates to: IWSRYRGSSGRSRRGQVDCHTTS*AVVHGF
Trigger: AAAGCCGTGTACAACAGCTCAGGAAGTTGTGTGACA...ATCTACCTGGCCTCTCCTGCTCCTGCCCGAAGAACCTCTGTATCTGCTCCAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS-3UTR CCA 90 bp ATTTGGAGCAGATACAGAGGTTCTTCGGGCAGGAGCAGGAGAGGCCAGGTAGATTTCAGCACCAGTTTTTaGTCAGAAGCAACAGCCACT +
Preference number: 4 (lower is better)
Translates to: IWSRYRGSSGRSRRGQVDFSTSF*SEATAT
Trigger: AGTGGCTGTTGCTTCTGACCAAAAACTGGTGCTGAA...ATCTACCTGGCCTCTCCTGCTCCTGCCCGAAGAACCTCTGTATCTGCTCCAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS-3UTR CCA 90 bp ATTTGGAGCAGATACAGAGGTTCTTCGGGCAGGAGCAGGAGAGGCCAGGTAGATAAGTACTTGAGCACATaGAAGTTTCTACCCTGCCAG +
Preference number: 4 (lower is better)
Translates to: IWSRYRGSSGRSRRGQVDKYLST*KFLPCQ
Trigger: CTGGCAGGGTAGAAACTTCCATGTGCTCAAGTACTT...ATCTACCTGGCCTCTCCTGCTCCTGCCCGAAGAACCTCTGTATCTGCTCCAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS-3UTR GCA 90 bp ATTTGGAGCAGATACAGAGGTTCTTCGGGCAGGAGCAGGAGAGGCCAGGTAGATTTCCTTCCAGAATCCTaGAATCTTCTCTGGTACAAG +
Preference number: 4 (lower is better)
Translates to: IWSRYRGSSGRSRRGQVDFLPES*NLLWYK
Trigger: CTTGTACCAGAGAAGATTGCAGGATTCTGGAAGGAA...ATCTACCTGGCCTCTCCTGCTCCTGCCCGAAGAACCTCTGTATCTGCTCCAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS CCA 90 bp GCACATGGAAGTTTCTACCCTGCCAGAGCAGGGTCAACTTCAGGATaGTGTAGCGCTCATAGTCCGTGTCCAGCACGTGGATCTCCCTGT +
Preference number: 5 (lower is better)
Translates to: AHGSFYPARAGSTSG*CSAHSPCPARGSPC
Trigger: ACAGGGAGATCCACGTGCTGGACACGGACTATGAGCGCTACACCATCCTGAAGTTGACCCTGCTCTGGCAGGGTAGAAACTTCCATGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS CCA 90 bp GTAAAGGCCTTGGTCTGCTGTCATTTCCCGGAACAGCCAGAAGCCTaGCTCATCCTCGTTCTCAAGGCTCCGAGTGAAGTACTTGAGCAC +
Preference number: 5 (lower is better)
Translates to: VKALVCCHFPEQPEA*LILVLKAPSEVLEH
Trigger: GTGCTCAAGTACTTCACTCGGAGCCTTGAGAACGAGGATGAGCCAGGCTTCTGGCTGTTCCGGGAAATGACAGCAGACCAAGGCCTTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS CCA 90 bp GGCTCATCCTCGTTCTCAAGGCTCCGAGTGAAGTACTTGAGCACATaGAAGTTTCTACCCTGCCAGAGCAGGGTCAACTTCAGGATGGTG +
Preference number: 5 (lower is better)
Translates to: GSSSFSRLRVKYLST*KFLPCQSRVNFRMV
Trigger: CACCATCCTGAAGTTGACCCTGCTCTGGCAGGGTAGAAACTTCCATGTGCTCAAGTACTTCACTCGGAGCCTTGAGAACGAGGATGAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS-3UTR CAA 90 bp GAATTTATTTGGAGCAGATACAGAGGTTCTTCGGGCAGGAGCAGGAGAGGCCAGGCCCTCTACCCTCCTTaGAGCCTTCAGCACCAGTTT +
Preference number: 5 (lower is better)
Translates to: EFIWSRYRGSSGRSRRGQALYPP*SLQHQF
Trigger: AAACTGGTGCTGAAGGCTCAAAGGAGGGTAGAGGGC...CTGGCCTCTCCTGCTCCTGCCCGAAGAACCTCTGTATCTGCTCCAAATAAATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS-3UTR CAA 90 bp ATTTGGAGCAGATACAGAGGTTCTTCGGGCAGGAGCAGGAGAGGCCAGGTAGATCAACATGTAAAGGCCTaGGTCTGCTGTCATTTCCCG +
Preference number: 5 (lower is better)
Translates to: IWSRYRGSSGRSRRGQVDQHVKA*VCCHFP
Trigger: CGGGAAATGACAGCAGACCAAGGCCTTTACATGTTG...ATCTACCTGGCCTCTCCTGCTCCTGCCCGAAGAACCTCTGTATCTGCTCCAAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS GCA 90 bp CACCAGTTTTTGGTCAGAAGCAACAGCCACTTCCTTCCAGAATCCTaGAATCTTCTCTGGTACAAGCTCCACCCTGGTAGACTCAGCTTG +
Preference number: 5 (lower is better)
Translates to: HQFLVRSNSHFLPES*NLLWYKLHPGRLSL
Trigger: CAAGCTGAGTCTACCAGGGTGGAGCTTGTACCAGAGAAGATTGCAGGATTCTGGAAGGAAGTGGCTGTTGCTTCTGACCAAAAACTGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS-3UTR CAA 90 bp ATTTGGAGCAGATACAGAGGTTCTTCGGGCAGGAGCAGGAGAGGCCAGGTAGATCTCCGAGTGAAGTACTaGAGCACATGGAAGTTTCTA +
Preference number: 5 (lower is better)
Translates to: IWSRYRGSSGRSRRGQVDLRVKY*STWKFL
Trigger: TAGAAACTTCCATGTGCTCAAGTACTTCACTCGGAG...ATCTACCTGGCCTCTCCTGCTCCTGCCCGAAGAACCTCTGTATCTGCTCCAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS GCA 72 bp CCTCCCATGTCGGGCCAACATGTAAAGGCCTTGGTCTaGTGTCATTTCCCGGAACAGCCAGAAGCCTGGCTC +
Preference number: 6 (lower is better)
Translates to: PPMSGQHVKALV*CHFPEQPEAWL
Trigger: GAGCCAGGCTTCTGGCTGTTCCGGGAAATGACAGCAGACCAAGGCCTTTACATGTTGGCCCGACATGGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS CCA 72 bp AGTTTCTACCCTGCCAGAGCAGGGTCAACTTCAGGATaGTGTAGCGCTCATAGTCCGTGTCCAGCACGTGGA +
Preference number: 6 (lower is better)
Translates to: SFYPARAGSTSG*CSAHSPCPARG
Trigger: TCCACGTGCTGGACACGGACTATGAGCGCTACACCATCCTGAAGTTGACCCTGCTCTGGCAGGGTAGAAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS CCA 72 bp TTGGTCTGCTGTCATTTCCCGGAACAGCCAGAAGCCTaGCTCATCCTCGTTCTCAAGGCTCCGAGTGAAGTA +
Preference number: 6 (lower is better)
Translates to: LVCCHFPEQPEA*LILVLKAPSEV
Trigger: TACTTCACTCGGAGCCTTGAGAACGAGGATGAGCCAGGCTTCTGGCTGTTCCGGGAAATGACAGCAGACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS CAA 72 bp GGCTCATCCTCGTTCTCAAGGCTCCGAGTGAAGTACTaGAGCACATGGAAGTTTCTACCCTGCCAGAGCAGG +
Preference number: 6 (lower is better)
Translates to: GSSSFSRLRVKY*STWKFLPCQSR
Trigger: CCTGCTCTGGCAGGGTAGAAACTTCCATGTGCTCAAGTACTTCACTCGGAGCCTTGAGAACGAGGATGAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7
CDS TCA 72 bp CCACTGAAGGTGAGGAACAAGCCCTCTACCCTCCTTTaGGCCTTCAGCACCAGTTTTTGGTCAGAAGCAACA +
Preference number: 6 (lower is better)
Translates to: PLKVRNKPSTLL*AFSTSFWSEAT
Trigger: TGTTGCTTCTGACCAAAAACTGGTGCTGAAGGCTCAAAGGAGGGTAGAGGGCTTGTTCCTCACCTTCAGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038482.7