RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LCN6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045684

Ensembl transcript IDs: ENSMUST00000059693.9, ENSMUST00000114197.3, ENSMUST00000114199.8

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACCAGCCACTGTaGAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCAGGATGCT +
Preference number: 1 (lower is better)
Translates to: EPRRAANQRQYHQPL*KDRACPPPPGCQDA
Trigger: AGCATCCTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
3UTR GCA 90 bp GCCAATCAGCGCCAGTACCACCAGCCACTGTGCAAAGACCGTGCCTaGCCACCTCCACCAGGATGCCAGGATGCTGTGGTGCTATATCCA +
Preference number: 1 (lower is better)
Translates to: ANQRQYHQPLCKDRA*PPPPGCQDAVVLYP
Trigger: TGGATATAGCACCACAGCATCCTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACTGGCGCTGATTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
3UTR-3UTR GCA 90 bp TATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACACCAGGATGCCAGGATaGTGTGGTGCTATATCCAGG +
Preference number: 2 (lower is better)
Translates to: YFEPKQEPRRAANQRQYHTRMPG*CGAISR
Trigger: CCTGGATATAGCACCACAGCATCCTGGCATCCTGGT...GTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
3UTR-3UTR GCA 90 bp TTTTATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCCACCTCCACCAGGATaGCAGGATGCTGTGGTGCTA +
Preference number: 2 (lower is better)
Translates to: FYFEPKQEPRRAANQRQYPPPPG*QDAVVL
Trigger: TAGCACCACAGCATCCTGGCATCCTGGTGGAGGTGG...GTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
3UTR-3UTR GCA 90 bp AATCATTTTATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCTGCAAAGACCGTGCCTaGCCACCTCCACCAGGATGC +
Preference number: 2 (lower is better)
Translates to: NHFILNPSKSLGEQPISACKDRA*PPPPGC
Trigger: GCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCA...GGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATAAAATGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
3UTR-3UTR CCA 90 bp TATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACGATGCCAGGATGCTGTaGTGCTATATCCAGGGTGTG +
Preference number: 2 (lower is better)
Translates to: YFEPKQEPRRAANQRQYHDARML*CYIQGV
Trigger: CACACCCTGGATATAGCACCACAGCATCCTGGCATC...GTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
3UTR-3UTR GCA 90 bp TTTTATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACACCAGGATGCCAGGATaGTGTGGTGCTATATCCAGG +
Preference number: 2 (lower is better)
Translates to: FYFEPKQEPRRAANQRQYTRMPG*CGAISR
Trigger: CCTGGATATAGCACCACAGCATCCTGGCATCCTGGT...GTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
3UTR GCA 72 bp CTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATaGCAGGATGCTGTGGTGCTATATCCAGGGTGTGGC +
Preference number: 3 (lower is better)
Translates to: LCKDRACPPPPG*QDAVVLYPGCG
Trigger: GCCACACCCTGGATATAGCACCACAGCATCCTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
CDS-3UTR GCA 90 bp CTGCCCACCTCCACCAGGATGCCAGGATGCTGTGGTGCTATATCCAGGGTGTGGCAGGGACCGAGGAGCTaGTTAGGGTCCAGCCTTCCC +
Preference number: 4 (lower is better)
Translates to: LPTSTRMPGCCGAISRVWQGPRS*LGSSLP
Trigger: GGGAAGGCTGGACCCTAAGCAGCTCCTCGGTCCCTG...CCACACCCTGGATATAGCACCACAGCATCCTGGCATCCTGGTGGAGGTGGGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114199.8
CDS-3UTR GCA 90 bp TACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCAGACCCATCGGGACTCTTaGTTCAGCAGCTCCACGGTG +
Preference number: 4 (lower is better)
Translates to: YHQPLCKDRACPPPPGCQTHRDS*FSSSTV
Trigger: CACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGT...CTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
CDS-3UTR TCA 90 bp TACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCAGGGCCTAGGAAAGATGTaGGAAGGGCCTCTCAGAGTC +
Preference number: 4 (lower is better)
Translates to: YHQPLCKDRACPPPPGCQGLGKM*EGPLRV
Trigger: GACTCTGAGAGGCCCTTCTCACATCTTTCCTAGGCC...CTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059693.9
CDS-3UTR TCA 90 bp CCAGTACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCTGGCTCCATTTGGTaGATAGCTGCATGGCTTCGT +
Preference number: 4 (lower is better)
Translates to: PVPPATVQRPCLPTSTRMPGSIW*IAAWLR
Trigger: ACGAAGCCATGCAGCTATTCACCAAATGGAGCCAGG...CATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
CDS-3UTR TCA 90 bp AGTACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCCCTGGCTCCATTTGGTaGATAGCTGCATGGCTTCGT +
Preference number: 4 (lower is better)
Translates to: STTSHCAKTVPAHLHQDAPGSIW*IAAWLR
Trigger: ACGAAGCCATGCAGCTATTCACCAAATGGAGCCAGG...GGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
CDS-3UTR CCA 90 bp CCAGTACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGAAGAAGCCCAGCCCCTaGCTCCATTTGGTGAATAGC +
Preference number: 4 (lower is better)
Translates to: PVPPATVQRPCLPTSTRMKKPSP*LHLVNS
Trigger: GCTATTCACCAAATGGAGCCAGGGGCTGGGCTTCTT...CATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
CDS-3UTR CCA 90 bp GAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACCAGCCAAAGAAGCCCAGCCCCTaGCTCCATTTGGTGAATAGC +
Preference number: 4 (lower is better)
Translates to: EPKQEPRRAANQRQYHQPKKPSP*LHLVNS
Trigger: GCTATTCACCAAATGGAGCCAGGGGCTGGGCTTCTT...TGGCTGGTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
CDS-3UTR GCA 90 bp TATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACACCCATCGGGACTCTTaGTTCAGCAGCTCCACGGTG +
Preference number: 4 (lower is better)
Translates to: YFEPKQEPRRAANQRQYHTHRDS*FSSSTV
Trigger: CACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGT...GTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
CDS-3UTR GCA 90 bp AATCATTTTATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCCATTTGGTGAATAGCTaGATGGCTTCGTGGCTAGCC +
Preference number: 4 (lower is better)
Translates to: NHFILNPSKSLGEQPISAHLVNS*MASWLA
Trigger: GGCTAGCCACGAAGCCATGCAGCTATTCACCAAATG...GGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATAAAATGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
CDS-3UTR CAA 90 bp AGTACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCCAGCTGAGCCTGCTGTaGAGACAAGAAGCCCAGCCC +
Preference number: 5 (lower is better)
Translates to: STTSHCAKTVPAHLHQDAQLSLL*RQEAQP
Trigger: GGGCTGGGCTTCTTGTCTCAACAGCAGGCTCAGCTG...GGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
CDS-3UTR CAA 90 bp GAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACCAGCCACAGCTGAGCCTGCTGTaGAGACAAGAAGCCCAGCCC +
Preference number: 5 (lower is better)
Translates to: EPKQEPRRAANQRQYHQPQLSLL*RQEAQP
Trigger: GGGCTGGGCTTCTTGTCTCAACAGCAGGCTCAGCTG...TGGCTGGTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114199.8
CDS CCA 90 bp GCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCAGGATGCTGTaGTGCTATATCCAGGGTGTGGCACTCACTGGAGGATCTTGTGTG +
Preference number: 5 (lower is better)
Translates to: AKTVPAHLHQDARML*CYIQGVALTGGSCV
Trigger: CACACAAGATCCTCCAGTGAGTGCCACACCCTGGATATAGCACCACAGCATCCTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114197.3
CDS GCA 90 bp GATTCTCAAACACCCATCGGGACTCTTGCTTCAGCAGCTCCACGGTaGTCTGATGACATCCGCCTGGCCCATGCCGAGAGGACTCAACTC +
Preference number: 5 (lower is better)
Translates to: DSQTPIGTLASAAPR*SDDIRLAHAERTQL
Trigger: GAGTTGAGTCCTCTCGGCATGGGCCAGGCGGATGTCATCAGAGCACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGTGTTTGAGAATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114199.8
CDS CCA 90 bp GGACTCTTGCTTCAGCAGCTCCACGGTGCTCTGATGACATCCGCCTaGCCCATGCCGAGAGGACTCAACTCTCAATTTGTTATCTGGAGT +
Preference number: 5 (lower is better)
Translates to: GLLLQQLHGALMTSA*PMPRGLNSQFVIWS
Trigger: ACTCCAGATAACAAATTGAGAGTTGAGTCCTCTCGGCATGGGCCAGGCGGATGTCATCAGAGCACCGTGGAGCTGCTGAAGCAAGAGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114199.8
CDS TCA 90 bp AATGGGGCTGTAGCAGTTCCCAGGATCCCACCCACAAGCCTCTGTTaGAGAAAGGTCCTTCTGCAGCTGAGCCTGCTGTTGAGACAAGAA +
Preference number: 5 (lower is better)
Translates to: NGAVAVPRIPPTSLC*RKVLLQLSLLLRQE
Trigger: TTCTTGTCTCAACAGCAGGCTCAGCTGCAGAAGGACCTTTCTTCAACAGAGGCTTGTGGGTGGGATCCTGGGAACTGCTACAGCCCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114197.3
CDS-3UTR CAA 90 bp AGTACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCGACTCAACTCTCAATTaGTTATCTGGAGTAAGAGTC +
Preference number: 5 (lower is better)
Translates to: STTSHCAKTVPAHLHQDADSTLN*LSGVRV
Trigger: GACTCTTACTCCAGATAACAAATTGAGAGTTGAGTC...GGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114199.8
CDS CCA 90 bp TCCGCCTGGCCCATGCCGAGAGGACTCAACTCTCAATTTGTTATCTaGAGTAAGAGTCACCACGACACCTTCCACATTCTTCATGTCCTT +
Preference number: 5 (lower is better)
Translates to: SAWPMPRGLNSQFVI*SKSHHDTFHILHVL
Trigger: AAGGACATGAAGAATGTGGAAGGTGTCGTGGTGACTCTTACTCCAGATAACAAATTGAGAGTTGAGTCCTCTCGGCATGGGCCAGGCGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114199.8
CDS GCA 72 bp AAGAAGCCCAGCCCCTGGCTCCATTTGGTGAATAGCTaGATGGCTTCGTGGCTAGCCATCTCTGTCCGACTG +
Preference number: 6 (lower is better)
Translates to: KKPSPWLHLVNS*MASWLAISVRL
Trigger: CAGTCGGACAGAGATGGCTAGCCACGAAGCCATGCAGCTATTCACCAAATGGAGCCAGGGGCTGGGCTTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059693.9
ENSMUST00000114197.3
ENSMUST00000114199.8
CDS CAA 90 bp ATCCAATATACCCAGAGAGGGATTCTCAAACACCCATCGGGACTCTaGCTTCAGCAGCTCCACGGTGCTCTGATGACATCCGCCTGGCCC +
Preference number: 6 (lower is better)
Translates to: IQYTQRGILKHPSGL*LQQLHGALMTSAWP
Trigger: GGGCCAGGCGGATGTCATCAGAGCACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGTGTTTGAGAATCCCTCTCTGGGTATATTGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114199.8
CDS TCA 72 bp GTAGCAGTTCCCAGGATCCCACCCACAAGCCTCTGTTaGAGAAAGGTCCTTCTGCAGCTGAGCCTGCTGTTG +
Preference number: 6 (lower is better)
Translates to: VAVPRIPPTSLC*RKVLLQLSLLL
Trigger: CAACAGCAGGCTCAGCTGCAGAAGGACCTTTCTTCAACAGAGGCTTGTGGGTGGGATCCTGGGAACTGCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114197.3
CDS GCA 72 bp CACATTCTTCATGTCCTTCTCCACCATGAAGTCCTTTaGACGGGAGGCCACAGCCAGGACATACCAGGGACC +
Preference number: 6 (lower is better)
Translates to: HILHVLLHHEVL*TGGHSQDIPGT
Trigger: GGTCCCTGGTATGTCCTGGCTGTGGCCTCCCGTGCAAAGGACTTCATGGTGGAGAAGGACATGAAGAATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114199.8
CDS CAA 72 bp ACCCAGAGAGGGATTCTCAAACACCCATCGGGACTCTaGCTTCAGCAGCTCCACGGTGCTCTGATGACATCC +
Preference number: 6 (lower is better)
Translates to: TQRGILKHPSGL*LQQLHGALMTS
Trigger: GGATGTCATCAGAGCACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGTGTTTGAGAATCCCTCTCTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059693.9
ENSMUST00000114197.3
ENSMUST00000114199.8
CDS CAA 90 bp ATCCAATATACCCAGAGAGGGATTCTCAAACACCCATCGGGACTCTaGCTTCAGCAGCTCCACGGTGCTCTGATGACATCCGCCTGGCCT +
Preference number: 6 (lower is better)
Translates to: IQYTQRGILKHPSGL*LQQLHGALMTSAWP
Trigger: AGGCCAGGCGGATGTCATCAGAGCACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGTGTTTGAGAATCCCTCTCTGGGTATATTGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059693.9
ENSMUST00000114197.3
CDS CAA 72 bp TGTAGCAGTTCCCAGGATCCCACCCACAAGCCTCTGTaGAAGAAAGGTCCTTCTGCAGCTGAGCCTGCTGTT +
Preference number: 6 (lower is better)
Translates to: CSSSQDPTHKPL*KKGPSAAEPAV
Trigger: AACAGCAGGCTCAGCTGCAGAAGGACCTTTCTTCAACAGAGGCTTGTGGGTGGGATCCTGGGAACTGCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114197.3
CDS CAA 72 bp CCGCCTGGCCCATGCCGAGAGGACTCAACTCTCAATTaGTTATCTGGAGTAAGAGTCACCACGACACCTTCC +
Preference number: 6 (lower is better)
Translates to: PPGPCREDSTLN*LSGVRVTTTPS
Trigger: GGAAGGTGTCGTGGTGACTCTTACTCCAGATAACAAATTGAGAGTTGAGTCCTCTCGGCATGGGCCAGGCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114199.8
CDS CAA 72 bp GTGCTATATCCAGGGTGTGGCACTCACTGGAGGATCTaGTGTGCACAAGTGACTGTAGAAGAAGCGAGCCAG +
Preference number: 6 (lower is better)
Translates to: VLYPGCGTHWRI*CAQVTVEEASQ
Trigger: CTGGCTCGCTTCTTCTACAGTCACTTGTGCACACAAGATCCTCCAGTGAGTGCCACACCCTGGATATAGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114197.3