Pregenerated sensors for LCN6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045684Ensembl transcript IDs: ENSMUST00000059693.9, ENSMUST00000114197.3, ENSMUST00000114199.8
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | GAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACCAGCCACTGTaGAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCAGGATGCT | + |
Preference number: 1 (lower is better) Translates to: EPRRAANQRQYHQPL*KDRACPPPPGCQDA Trigger: AGCATCCTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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3UTR GCA 90 bp | GCCAATCAGCGCCAGTACCACCAGCCACTGTGCAAAGACCGTGCCTaGCCACCTCCACCAGGATGCCAGGATGCTGTGGTGCTATATCCA | + |
Preference number: 1 (lower is better) Translates to: ANQRQYHQPLCKDRA*PPPPGCQDAVVLYP Trigger: TGGATATAGCACCACAGCATCCTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACTGGCGCTGATTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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3UTR-3UTR GCA 90 bp | TATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACACCAGGATGCCAGGATaGTGTGGTGCTATATCCAGG | + |
Preference number: 2 (lower is better) Translates to: YFEPKQEPRRAANQRQYHTRMPG*CGAISR Trigger: CCTGGATATAGCACCACAGCATCCTGGCATCCTGGT...GTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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3UTR-3UTR GCA 90 bp | TTTTATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCCACCTCCACCAGGATaGCAGGATGCTGTGGTGCTA | + |
Preference number: 2 (lower is better) Translates to: FYFEPKQEPRRAANQRQYPPPPG*QDAVVL Trigger: TAGCACCACAGCATCCTGGCATCCTGGTGGAGGTGG...GTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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3UTR-3UTR GCA 90 bp | AATCATTTTATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCTGCAAAGACCGTGCCTaGCCACCTCCACCAGGATGC | + |
Preference number: 2 (lower is better) Translates to: NHFILNPSKSLGEQPISACKDRA*PPPPGC Trigger: GCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCA...GGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATAAAATGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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3UTR-3UTR CCA 90 bp | TATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACGATGCCAGGATGCTGTaGTGCTATATCCAGGGTGTG | + |
Preference number: 2 (lower is better) Translates to: YFEPKQEPRRAANQRQYHDARML*CYIQGV Trigger: CACACCCTGGATATAGCACCACAGCATCCTGGCATC...GTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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3UTR-3UTR GCA 90 bp | TTTTATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACACCAGGATGCCAGGATaGTGTGGTGCTATATCCAGG | + |
Preference number: 2 (lower is better) Translates to: FYFEPKQEPRRAANQRQYTRMPG*CGAISR Trigger: CCTGGATATAGCACCACAGCATCCTGGCATCCTGGT...GTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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3UTR GCA 72 bp | CTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATaGCAGGATGCTGTGGTGCTATATCCAGGGTGTGGC | + |
Preference number: 3 (lower is better) Translates to: LCKDRACPPPPG*QDAVVLYPGCG Trigger: GCCACACCCTGGATATAGCACCACAGCATCCTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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CDS-3UTR GCA 90 bp | CTGCCCACCTCCACCAGGATGCCAGGATGCTGTGGTGCTATATCCAGGGTGTGGCAGGGACCGAGGAGCTaGTTAGGGTCCAGCCTTCCC | + |
Preference number: 4 (lower is better) Translates to: LPTSTRMPGCCGAISRVWQGPRS*LGSSLP Trigger: GGGAAGGCTGGACCCTAAGCAGCTCCTCGGTCCCTG...CCACACCCTGGATATAGCACCACAGCATCCTGGCATCCTGGTGGAGGTGGGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114199.8 |
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CDS-3UTR GCA 90 bp | TACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCAGACCCATCGGGACTCTTaGTTCAGCAGCTCCACGGTG | + |
Preference number: 4 (lower is better) Translates to: YHQPLCKDRACPPPPGCQTHRDS*FSSSTV Trigger: CACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGT...CTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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CDS-3UTR TCA 90 bp | TACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCAGGGCCTAGGAAAGATGTaGGAAGGGCCTCTCAGAGTC | + |
Preference number: 4 (lower is better) Translates to: YHQPLCKDRACPPPPGCQGLGKM*EGPLRV Trigger: GACTCTGAGAGGCCCTTCTCACATCTTTCCTAGGCC...CTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059693.9 |
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CDS-3UTR TCA 90 bp | CCAGTACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCTGGCTCCATTTGGTaGATAGCTGCATGGCTTCGT | + |
Preference number: 4 (lower is better) Translates to: PVPPATVQRPCLPTSTRMPGSIW*IAAWLR Trigger: ACGAAGCCATGCAGCTATTCACCAAATGGAGCCAGG...CATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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CDS-3UTR TCA 90 bp | AGTACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCCCTGGCTCCATTTGGTaGATAGCTGCATGGCTTCGT | + |
Preference number: 4 (lower is better) Translates to: STTSHCAKTVPAHLHQDAPGSIW*IAAWLR Trigger: ACGAAGCCATGCAGCTATTCACCAAATGGAGCCAGG...GGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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CDS-3UTR CCA 90 bp | CCAGTACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGAAGAAGCCCAGCCCCTaGCTCCATTTGGTGAATAGC | + |
Preference number: 4 (lower is better) Translates to: PVPPATVQRPCLPTSTRMKKPSP*LHLVNS Trigger: GCTATTCACCAAATGGAGCCAGGGGCTGGGCTTCTT...CATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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CDS-3UTR CCA 90 bp | GAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACCAGCCAAAGAAGCCCAGCCCCTaGCTCCATTTGGTGAATAGC | + |
Preference number: 4 (lower is better) Translates to: EPKQEPRRAANQRQYHQPKKPSP*LHLVNS Trigger: GCTATTCACCAAATGGAGCCAGGGGCTGGGCTTCTT...TGGCTGGTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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CDS-3UTR GCA 90 bp | TATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACACCCATCGGGACTCTTaGTTCAGCAGCTCCACGGTG | + |
Preference number: 4 (lower is better) Translates to: YFEPKQEPRRAANQRQYHTHRDS*FSSSTV Trigger: CACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGT...GTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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CDS-3UTR GCA 90 bp | AATCATTTTATTTTGAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCCATTTGGTGAATAGCTaGATGGCTTCGTGGCTAGCC | + |
Preference number: 4 (lower is better) Translates to: NHFILNPSKSLGEQPISAHLVNS*MASWLA Trigger: GGCTAGCCACGAAGCCATGCAGCTATTCACCAAATG...GGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTCAAAATAAAATGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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CDS-3UTR CAA 90 bp | AGTACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCCAGCTGAGCCTGCTGTaGAGACAAGAAGCCCAGCCC | + |
Preference number: 5 (lower is better) Translates to: STTSHCAKTVPAHLHQDAQLSLL*RQEAQP Trigger: GGGCTGGGCTTCTTGTCTCAACAGCAGGCTCAGCTG...GGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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CDS-3UTR CAA 90 bp | GAACCCAAGCAAGAGCCTAGGAGAGCAGCCAATCAGCGCCAGTACCACCAGCCACAGCTGAGCCTGCTGTaGAGACAAGAAGCCCAGCCC | + |
Preference number: 5 (lower is better) Translates to: EPKQEPRRAANQRQYHQPQLSLL*RQEAQP Trigger: GGGCTGGGCTTCTTGTCTCAACAGCAGGCTCAGCTG...TGGCTGGTGGTACTGGCGCTGATTGGCTGCTCTCCTAGGCTCTTGCTTGGGTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114199.8 |
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CDS CCA 90 bp | GCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCAGGATGCTGTaGTGCTATATCCAGGGTGTGGCACTCACTGGAGGATCTTGTGTG | + |
Preference number: 5 (lower is better) Translates to: AKTVPAHLHQDARML*CYIQGVALTGGSCV Trigger: CACACAAGATCCTCCAGTGAGTGCCACACCCTGGATATAGCACCACAGCATCCTGGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114197.3 |
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CDS GCA 90 bp | GATTCTCAAACACCCATCGGGACTCTTGCTTCAGCAGCTCCACGGTaGTCTGATGACATCCGCCTGGCCCATGCCGAGAGGACTCAACTC | + |
Preference number: 5 (lower is better) Translates to: DSQTPIGTLASAAPR*SDDIRLAHAERTQL Trigger: GAGTTGAGTCCTCTCGGCATGGGCCAGGCGGATGTCATCAGAGCACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGTGTTTGAGAATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114199.8 |
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CDS CCA 90 bp | GGACTCTTGCTTCAGCAGCTCCACGGTGCTCTGATGACATCCGCCTaGCCCATGCCGAGAGGACTCAACTCTCAATTTGTTATCTGGAGT | + |
Preference number: 5 (lower is better) Translates to: GLLLQQLHGALMTSA*PMPRGLNSQFVIWS Trigger: ACTCCAGATAACAAATTGAGAGTTGAGTCCTCTCGGCATGGGCCAGGCGGATGTCATCAGAGCACCGTGGAGCTGCTGAAGCAAGAGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114199.8 |
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CDS TCA 90 bp | AATGGGGCTGTAGCAGTTCCCAGGATCCCACCCACAAGCCTCTGTTaGAGAAAGGTCCTTCTGCAGCTGAGCCTGCTGTTGAGACAAGAA | + |
Preference number: 5 (lower is better) Translates to: NGAVAVPRIPPTSLC*RKVLLQLSLLLRQE Trigger: TTCTTGTCTCAACAGCAGGCTCAGCTGCAGAAGGACCTTTCTTCAACAGAGGCTTGTGGGTGGGATCCTGGGAACTGCTACAGCCCCATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114197.3 |
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CDS-3UTR CAA 90 bp | AGTACCACCAGCCACTGTGCAAAGACCGTGCCTGCCCACCTCCACCAGGATGCCGACTCAACTCTCAATTaGTTATCTGGAGTAAGAGTC | + |
Preference number: 5 (lower is better) Translates to: STTSHCAKTVPAHLHQDADSTLN*LSGVRV Trigger: GACTCTTACTCCAGATAACAAATTGAGAGTTGAGTC...GGCATCCTGGTGGAGGTGGGCAGGCACGGTCTTTGCACAGTGGCTGGTGGTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114199.8 |
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CDS CCA 90 bp | TCCGCCTGGCCCATGCCGAGAGGACTCAACTCTCAATTTGTTATCTaGAGTAAGAGTCACCACGACACCTTCCACATTCTTCATGTCCTT | + |
Preference number: 5 (lower is better) Translates to: SAWPMPRGLNSQFVI*SKSHHDTFHILHVL Trigger: AAGGACATGAAGAATGTGGAAGGTGTCGTGGTGACTCTTACTCCAGATAACAAATTGAGAGTTGAGTCCTCTCGGCATGGGCCAGGCGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114199.8 |
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CDS GCA 72 bp | AAGAAGCCCAGCCCCTGGCTCCATTTGGTGAATAGCTaGATGGCTTCGTGGCTAGCCATCTCTGTCCGACTG | + |
Preference number: 6 (lower is better) Translates to: KKPSPWLHLVNS*MASWLAISVRL Trigger: CAGTCGGACAGAGATGGCTAGCCACGAAGCCATGCAGCTATTCACCAAATGGAGCCAGGGGCTGGGCTTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059693.9 ENSMUST00000114197.3 ENSMUST00000114199.8 |
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CDS CAA 90 bp | ATCCAATATACCCAGAGAGGGATTCTCAAACACCCATCGGGACTCTaGCTTCAGCAGCTCCACGGTGCTCTGATGACATCCGCCTGGCCC | + |
Preference number: 6 (lower is better) Translates to: IQYTQRGILKHPSGL*LQQLHGALMTSAWP Trigger: GGGCCAGGCGGATGTCATCAGAGCACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGTGTTTGAGAATCCCTCTCTGGGTATATTGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114199.8 |
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CDS TCA 72 bp | GTAGCAGTTCCCAGGATCCCACCCACAAGCCTCTGTTaGAGAAAGGTCCTTCTGCAGCTGAGCCTGCTGTTG | + |
Preference number: 6 (lower is better) Translates to: VAVPRIPPTSLC*RKVLLQLSLLL Trigger: CAACAGCAGGCTCAGCTGCAGAAGGACCTTTCTTCAACAGAGGCTTGTGGGTGGGATCCTGGGAACTGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114197.3 |
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CDS GCA 72 bp | CACATTCTTCATGTCCTTCTCCACCATGAAGTCCTTTaGACGGGAGGCCACAGCCAGGACATACCAGGGACC | + |
Preference number: 6 (lower is better) Translates to: HILHVLLHHEVL*TGGHSQDIPGT Trigger: GGTCCCTGGTATGTCCTGGCTGTGGCCTCCCGTGCAAAGGACTTCATGGTGGAGAAGGACATGAAGAATGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114199.8 |
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CDS CAA 72 bp | ACCCAGAGAGGGATTCTCAAACACCCATCGGGACTCTaGCTTCAGCAGCTCCACGGTGCTCTGATGACATCC | + |
Preference number: 6 (lower is better) Translates to: TQRGILKHPSGL*LQQLHGALMTS Trigger: GGATGTCATCAGAGCACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGTGTTTGAGAATCCCTCTCTGGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059693.9 ENSMUST00000114197.3 ENSMUST00000114199.8 |
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CDS CAA 90 bp | ATCCAATATACCCAGAGAGGGATTCTCAAACACCCATCGGGACTCTaGCTTCAGCAGCTCCACGGTGCTCTGATGACATCCGCCTGGCCT | + |
Preference number: 6 (lower is better) Translates to: IQYTQRGILKHPSGL*LQQLHGALMTSAWP Trigger: AGGCCAGGCGGATGTCATCAGAGCACCGTGGAGCTGCTGAAGCAAGAGTCCCGATGGGTGTTTGAGAATCCCTCTCTGGGTATATTGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059693.9 ENSMUST00000114197.3 |
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CDS CAA 72 bp | TGTAGCAGTTCCCAGGATCCCACCCACAAGCCTCTGTaGAAGAAAGGTCCTTCTGCAGCTGAGCCTGCTGTT | + |
Preference number: 6 (lower is better) Translates to: CSSSQDPTHKPL*KKGPSAAEPAV Trigger: AACAGCAGGCTCAGCTGCAGAAGGACCTTTCTTCAACAGAGGCTTGTGGGTGGGATCCTGGGAACTGCTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114197.3 |
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CDS CAA 72 bp | CCGCCTGGCCCATGCCGAGAGGACTCAACTCTCAATTaGTTATCTGGAGTAAGAGTCACCACGACACCTTCC | + |
Preference number: 6 (lower is better) Translates to: PPGPCREDSTLN*LSGVRVTTTPS Trigger: GGAAGGTGTCGTGGTGACTCTTACTCCAGATAACAAATTGAGAGTTGAGTCCTCTCGGCATGGGCCAGGCGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114199.8 |
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CDS CAA 72 bp | GTGCTATATCCAGGGTGTGGCACTCACTGGAGGATCTaGTGTGCACAAGTGACTGTAGAAGAAGCGAGCCAG | + |
Preference number: 6 (lower is better) Translates to: VLYPGCGTHWRI*CAQVTVEEASQ Trigger: CTGGCTCGCTTCTTCTACAGTCACTTGTGCACACAAGATCCTCCAGTGAGTGCCACACCCTGGATATAGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114197.3 |