Pregenerated sensors for LCN5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026937Ensembl transcript IDs: ENSMUST00000028306.13, ENSMUST00000100312.10, ENSMUST00000100313.4
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGACCACTGCAGCCTCTGTaGCAGCTGCCAGCCCCACAC | + |
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Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRPLQPL*QLPAPH Trigger: GTGTGGGGCTGGCAGCTGGCACAGAGGCTGCAGTGG...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR GCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGAAGCCTCTGTGCCAGCTaGCAGCCCCACACACAGTCC | + |
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Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRSLCAS*QPHTQS Trigger: GGACTGTGTGTGGGGCTGGCAGCTGGCACAGAGGCT...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR TCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGAGCTGAACCGTCCACCTaGGTGGCTGCAACCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRAEPST*VAATFS Trigger: GGAGAAGGTTGCAGCCACTCAGGTGGACGGTTCAGC...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR GCA 90 bp | AGCTTGCACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAACCACTGCAGCCTCTGTaGCAGCTGCCAGCCCCACAC | + |
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Preference number: 4 (lower is better) Translates to: SLHRRLDPICSALHLELEPLQPL*QLPAPH Trigger: GTGTGGGGCTGGCAGCTGGCACAGAGGCTGCAGTGG...TTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGTGCAAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS-3UTR GCA 90 bp | AGCTTGCACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAAAGCCTCTGTGCCAGCTaGCAGCCCCACACACAGTCC | + |
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Preference number: 4 (lower is better) Translates to: SLHRRLDPICSALHLELESLCAS*QPHTQS Trigger: GGACTGTGTGTGGGGCTGGCAGCTGGCACAGAGGCT...TTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGTGCAAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS-3UTR GCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGAGAAGTCCTTCACCACTaGAGCCTCTGTGCCAGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRREVLHH*SLCASC Trigger: GCAGCTGGCACAGAGGCTGCAGTGGTGAAGGACTTC...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR TCA 90 bp | CACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAAAGTGTGGCTGAACCGTCCACCTaGGTGGCTGCAACCTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: HRRLDPICSALHLELESVAEPST*VAATFS Trigger: GGAGAAGGTTGCAGCCACTCAGGTGGACGGTTCAGC...CACACTTTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS-3UTR GCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGAGTCCACCTGAGTGGCTaGAACCTTCTCCAGCACACA | + |
|
Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRVHLSG*NLLQHT Trigger: TGTGTGCTGGAGAAGGTTGCAGCCACTCAGGTGGAC...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR CCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGATCAGCTCAACCACCATaGCTCCCATCTTCTCCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRSAQPP*LPSSPP Trigger: AGGAGGAGAAGATGGGAGCCATGGTGGTTGAGCTGA...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR TCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGACGGCCACCAGAGAGGTaGTATCAATCACAGTATACG | + |
|
Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRRPPER*YQSQYT Trigger: CGTATACTGTGATTGATATCACCTCTCTGGTGGCCG...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR GCA 90 bp | ACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAAAGTGTGGGTCCACCTGAGTGGCTaGAACCTTCTCCAGCACACA | + |
|
Preference number: 4 (lower is better) Translates to: TGGLILYAQLFTWSWKVWVHLSG*NLLQHT Trigger: TGTGTGCTGGAGAAGGTTGCAGCCACTCAGGTGGAC...CCACACTTTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS-3UTR CCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGACGTATGCACCCATCTTaGAGGCAAGGGCAATTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRRMHPS*RQGQFH Trigger: ATGAAATTGCCCTTGCCTCCAAGATGGGTGCATACG...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR CCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGACCTCATTGTAATAGGTaGTGGTCAGAGCCAGAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRPHCNR*WSEPEG Trigger: ACCTTCTGGCTCTGACCACCACCTATTACAATGAGG...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR TCA 90 bp | ACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAAAGTGTGGCGGCCACCAGAGAGGTaGTATCAATCACAGTATACG | + |
|
Preference number: 4 (lower is better) Translates to: TGGLILYAQLFTWSWKVWRPPER*YQSQYT Trigger: CGTATACTGTGATTGATATCACCTCTCTGGTGGCCG...CCACACTTTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS-3UTR TCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGAGTGTATGTCTGTTTCTaGAAACCCATGCTTCAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRVYVCF*KPMLQG Trigger: GCCTTGAAGCATGGGTTTTCAGAAACAGACATACAC...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR CCA 90 bp | TTGCACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAAAGTTCAGCTCAACCACCATaGCTCCCATCTTCTCCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: LHRRLDPICSALHLELESSAQPP*LPSSPP Trigger: AGGAGGAGAAGATGGGAGCCATGGTGGTTGAGCTGA...ACTTTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGTGCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS-3UTR GCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGAGTTTCTGAAAACCCATaGTTCAAGGCTATCTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRVSENP*FKAIFW Trigger: CCAGAAGATAGCCTTGAAGCATGGGTTTTCAGAAAC...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR CCA 90 bp | AGCTTGCACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAACGTATGCACCCATCTTaGAGGCAAGGGCAATTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: SLHRRLDPICSALHLELERMHPS*RQGQFH Trigger: ATGAAATTGCCCTTGCCTCCAAGATGGGTGCATACG...TTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGTGCAAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS-3UTR CCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGAACGTCATGTAGTCTGTaGCTACAACAACAACTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRTSCSL*LQQQLL Trigger: AAGAAGTTGTTGTTGTAGCCACAGACTACATGACGT...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR TCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGAAGGTTAAGTCATGCTTaGGAATGTGTATGTCTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRRLSHA*ECVCLF Trigger: AAACAGACATACACATTCTCAAGCATGACTTAACCT...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR GCA 90 bp | AGCTTGCACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAAGTTTCTGAAAACCCATaGTTCAAGGCTATCTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: SLHRRLDPICSALHLELEVSENP*FKAIFW Trigger: CCAGAAGATAGCCTTGAAGCATGGGTTTTCAGAAAC...TTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGTGCAAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS-3UTR CCA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGATTCAAGGCTATCTTCTaGAAATTATTCAGAGCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: AASFISHRCRDPLGRGRRFKAIF*KLFRAS Trigger: GGAAGCTCTGAATAATTTCCAGAAGATAGCCTTGAA...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR CCA 90 bp | AGCTTGCACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAAACGTCATGTAGTCTGTaGCTACAACAACAACTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SLHRRLDPICSALHLELETSCSL*LQQQLL Trigger: AAGAAGTTGTTGTTGTAGCCACAGACTACATGACGT...TTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGTGCAAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS-3UTR CCA 90 bp | CACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAAAGTGTGTTCAAGGCTATCTTCTaGAAATTATTCAGAGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: HRRLDPICSALHLELESVFKAIF*KLFRAS Trigger: GGAAGCTCTGAATAATTTCCAGAAGATAGCCTTGAA...CACACTTTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS GCA 90 bp | CTTGTTTACGTCGAAGTCCTTCACCACTGCAGCCTCTGTGCCAGCTaGCAGCCCCACACACAGTCCCAGCAAGGTGAAGAGCATGATGCT | + |
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Preference number: 5 (lower is better) Translates to: LVYVEVLHHCSLCAS*QPHTQSQQGEEHDA Trigger: AGCATCATGCTCTTCACCTTGCTGGGACTGTGTGTGGGGCTGGCAGCTGGCACAGAGGCTGCAGTGGTGAAGGACTTCGACGTAAACAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS CCA 90 bp | AGGTGGTGGTCAGAGCCAGAAGGTTCTCTTTCAGCTCAACCACCATaGCTCCCATCTTCTCCTCCTTGTGTGCCAAGCCGTATGCACCCA | + |
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Preference number: 5 (lower is better) Translates to: RWWSEPEGSLSAQPP*LPSSPPCVPSRMHP Trigger: TGGGTGCATACGGCTTGGCACACAAGGAGGAGAAGATGGGAGCCATGGTGGTTGAGCTGAAAGAGAACCTTCTGGCTCTGACCACCACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS-3UTR CAA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGACCGTATGCACCCATCTaGGAGGCAAGGGCAATTTCA | + |
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Preference number: 5 (lower is better) Translates to: AASFISHRCRDPLGRGRRPYAPI*EARAIS Trigger: TGAAATTGCCCTTGCCTCCAAGATGGGTGCATACGG...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS CCA 90 bp | CTGCAACCTTCTCCAGCACACAGTGGCCCTCATTGTAATAGGTGGTaGTCAGAGCCAGAAGGTTCTCTTTCAGCTCAACCACCATGGCTC | + |
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Preference number: 5 (lower is better) Translates to: LQPSPAHSGPHCNRW*SEPEGSLSAQPPWL Trigger: GAGCCATGGTGGTTGAGCTGAAAGAGAACCTTCTGGCTCTGACCACCACCTATTACAATGAGGGCCACTGTGTGCTGGAGAAGGTTGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS-3UTR CAA 90 bp | ACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAAAGTGTGGCCGTATGCACCCATCTaGGAGGCAAGGGCAATTTCA | + |
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Preference number: 5 (lower is better) Translates to: TGGLILYAQLFTWSWKVWPYAPI*EARAIS Trigger: TGAAATTGCCCTTGCCTCCAAGATGGGTGCATACGG...CCACACTTTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS GCA 90 bp | CTCTTTCAGCTCAACCACCATGGCTCCCATCTTCTCCTCCTTGTGTaGCAAGCCGTATGCACCCATCTTGGAGGCAAGGGCAATTTCATA | + |
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Preference number: 5 (lower is better) Translates to: LFQLNHHGSHLLLLV*QAVCTHLGGKGNFI Trigger: TATGAAATTGCCCTTGCCTCCAAGATGGGTGCATACGGCTTGGCACACAAGGAGGAGAAGATGGGAGCCATGGTGGTTGAGCTGAAAGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS-3UTR CAA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGACAGAAGCCTAAAAACTaGTTTACGTCGAAGTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: AASFISHRCRDPLGRGRRQKPKN*FTSKSF Trigger: GAAGGACTTCGACGTAAACAAGTTTTTAGGCTTCTG...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS-3UTR CAA 90 bp | GCAGCAAGCTTTATTTCACACAGGTGCAGGGACCCCTTGGGTAGGGGCAGGAGACAGGTTAAGTCATGCTaGAGAATGTGTATGTCTGTT | + |
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Preference number: 5 (lower is better) Translates to: AASFISHRCRDPLGRGRRQVKSC*RMCMSV Trigger: AACAGACATACACATTCTCAAGCATGACTTAACCTG...TCTCCTGCCCCTACCCAAGGGGTCCCTGCACCTGTGTGAAATAAAGCTTGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS TCA 90 bp | AGTCTGTGGCTACAACAACAACTTCTTTCTCTCCTGATATTCTGGTaGCCTTGTACTTCGCTGAACCGTCCACCTGAGTGGCTGCAACCT | + |
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Preference number: 5 (lower is better) Translates to: SLWLQQQLLSLLIFW*PCTSLNRPPEWLQP Trigger: AGGTTGCAGCCACTCAGGTGGACGGTTCAGCGAAGTACAAGGTCACCAGAATATCAGGAGAGAAAGAAGTTGTTGTTGTAGCCACAGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS-3UTR CAA 90 bp | ACAGGCGGCTTGATCCTATATGCTCAGCTCTTCACCTGGAGCTGGAAAGTGTGGCAGAAGCCTAAAAACTaGTTTACGTCGAAGTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: TGGLILYAQLFTWSWKVWQKPKN*FTSKSF Trigger: GAAGGACTTCGACGTAAACAAGTTTTTAGGCTTCTG...CCACACTTTCCAGCTCCAGGTGAAGAGCTGAGCATATAGGATCAAGCCGCCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100313.4 |
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| CDS CCA 90 bp | ATGTGTATGTCTGTTTCTGAAAACCCATGCTTCAAGGCTATCTTCTaGAAATTATTCAGAGCTTCCCCATTGTTGTCCAAGCTCCGGCTG | + |
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Preference number: 5 (lower is better) Translates to: MCMSVSENPCFKAIF*KLFRASPLLSKLRL Trigger: CAGCCGGAGCTTGGACAACAATGGGGAAGCTCTGAATAATTTCCAGAAGATAGCCTTGAAGCATGGGTTTTCAGAAACAGACATACACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS TCA 90 bp | AGATCTGTCCCGATTGCAATGCGTTCACACAGGTTAAGTCATGCTTaGGAATGTGTATGTCTGTTTCTGAAAACCCATGCTTCAAGGCTA | + |
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Preference number: 5 (lower is better) Translates to: RSVPIAMRSHRLSHA*ECVCLFLKTHASRL Trigger: TAGCCTTGAAGCATGGGTTTTCAGAAACAGACATACACATTCTCAAGCATGACTTAACCTGTGTGAACGCATTGCAATCGGGACAGATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS GCA 90 bp | GTTAAGTCATGCTTGAGAATGTGTATGTCTGTTTCTGAAAACCCATaGTTCAAGGCTATCTTCTGGAAATTATTCAGAGCTTCCCCATTG | + |
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Preference number: 5 (lower is better) Translates to: VKSCLRMCMSVSENP*FKAIFWKLFRASPL Trigger: CAATGGGGAAGCTCTGAATAATTTCCAGAAGATAGCCTTGAAGCATGGGTTTTCAGAAACAGACATACACATTCTCAAGCATGACTTAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS GCA 72 bp | CTCAACCACCATGGCTCCCATCTTCTCCTCCTTGTGTaGCAAGCCGTATGCACCCATCTTGGAGGCAAGGGC | + |
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Preference number: 6 (lower is better) Translates to: LNHHGSHLLLLV*QAVCTHLGGKG Trigger: GCCCTTGCCTCCAAGATGGGTGCATACGGCTTGGCACACAAGGAGGAGAAGATGGGAGCCATGGTGGTTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS GCA 72 bp | GGCTCCCATCTTCTCCTCCTTGTGTGCCAAGCCGTATaGACCCATCTTGGAGGCAAGGGCAATTTCATACCA | + |
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Preference number: 6 (lower is better) Translates to: GSHLLLLVCQAV*THLGGKGNFIP Trigger: TGGTATGAAATTGCCCTTGCCTCCAAGATGGGTGCATACGGCTTGGCACACAAGGAGGAGAAGATGGGAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS CAA 90 bp | AGGTTCTCTTTCAGCTCAACCACCATGGCTCCCATCTTCTCCTCCTaGTGTGCCAAGCCGTATGCACCCATCTTGGAGGCAAGGGCAATT | + |
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Preference number: 6 (lower is better) Translates to: RFSFSSTTMAPIFSS*CAKPYAPILEARAI Trigger: AATTGCCCTTGCCTCCAAGATGGGTGCATACGGCTTGGCACACAAGGAGGAGAAGATGGGAGCCATGGTGGTTGAGCTGAAAGAGAACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS CCA 72 bp | TCTCCAGCACACAGTGGCCCTCATTGTAATAGGTGGTaGTCAGAGCCAGAAGGTTCTCTTTCAGCTCAACCA | + |
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Preference number: 6 (lower is better) Translates to: SPAHSGPHCNRW*SEPEGSLSAQP Trigger: TGGTTGAGCTGAAAGAGAACCTTCTGGCTCTGACCACCACCTATTACAATGAGGGCCACTGTGTGCTGGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS CCA 72 bp | CCTTCTCCAGCACACAGTGGCCCTCATTGTAATAGGTaGTGGTCAGAGCCAGAAGGTTCTCTTTCAGCTCAA | + |
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Preference number: 6 (lower is better) Translates to: PSPAHSGPHCNR*WSEPEGSLSAQ Trigger: TTGAGCTGAAAGAGAACCTTCTGGCTCTGACCACCACCTATTACAATGAGGGCCACTGTGTGCTGGAGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS CAA 90 bp | CCCATCTTGGAGGCAAGGGCAATTTCATACCAGAAGCCTAAAAACTaGTTTACGTCGAAGTCCTTCACCACTGCAGCCTCTGTGCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: PILEARAISYQKPKN*FTSKSFTTAASVPA Trigger: AGCTGGCACAGAGGCTGCAGTGGTGAAGGACTTCGACGTAAACAAGTTTTTAGGCTTCTGGTATGAAATTGCCCTTGCCTCCAAGATGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS CAA 72 bp | TTCTCCTCCTTGTGTGCCAAGCCGTATGCACCCATCTaGGAGGCAAGGGCAATTTCATACCAGAAGCCTAAA | + |
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Preference number: 6 (lower is better) Translates to: FSSLCAKPYAPI*EARAISYQKPK Trigger: TTTAGGCTTCTGGTATGAAATTGCCCTTGCCTCCAAGATGGGTGCATACGGCTTGGCACACAAGGAGGAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS CAA 72 bp | GAGGCAAGGGCAATTTCATACCAGAAGCCTAAAAACTaGTTTACGTCGAAGTCCTTCACCACTGCAGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: EARAISYQKPKN*FTSKSFTTAAS Trigger: AGAGGCTGCAGTGGTGAAGGACTTCGACGTAAACAAGTTTTTAGGCTTCTGGTATGAAATTGCCCTTGCCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS CAA 72 bp | GCTATCTTCTGGAAATTATTCAGAGCTTCCCCATTGTaGTCCAAGCTCCGGCTGTACAGTTTCATGGCTCGA | + |
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Preference number: 6 (lower is better) Translates to: AIFWKLFRASPL*SKLRLYSFMAR Trigger: TCGAGCCATGAAACTGTACAGCCGGAGCTTGGACAACAATGGGGAAGCTCTGAATAATTTCCAGAAGATAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS CAA 72 bp | AAGGCTATCTTCTGGAAATTATTCAGAGCTTCCCCATaGTTGTCCAAGCTCCGGCTGTACAGTTTCATGGCT | + |
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Preference number: 6 (lower is better) Translates to: KAIFWKLFRASP*LSKLRLYSFMA Trigger: AGCCATGAAACTGTACAGCCGGAGCTTGGACAACAATGGGGAAGCTCTGAATAATTTCCAGAAGATAGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028306.13 ENSMUST00000100312.10 ENSMUST00000100313.4 |
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| CDS CAA 90 bp | CAGATCTGTCCCGATTGCAATGCGTTCACACAGGTTAAGTCATGCTaGAGAATGTGTATGTCTGTTTCTGAAAACCCATGCTTCAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: QICPDCNAFTQVKSC*RMCMSVSENPCFKA Trigger: AGCCTTGAAGCATGGGTTTTCAGAAACAGACATACACATTCTCAAGCATGACTTAACCTGTGTGAACGCATTGCAATCGGGACAGATCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS TCA 72 bp | CCGATTGCAATGCGTTCACACAGGTTAAGTCATGCTTaGGAATGTGTATGTCTGTTTCTGAAAACCCATGCT | + |
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Preference number: 6 (lower is better) Translates to: PIAMRSHRLSHA*ECVCLFLKTHA Trigger: AGCATGGGTTTTCAGAAACAGACATACACATTCTCAAGCATGACTTAACCTGTGTGAACGCATTGCAATCGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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| CDS GCA 72 bp | TGTCCCGATTGCAATGCGTTCACACAGGTTAAGTCATaGTTGAGAATGTGTATGTCTGTTTCTGAAAACCCA | + |
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Preference number: 6 (lower is better) Translates to: CPDCNAFTQVKS*LRMCMSVSENP Trigger: TGGGTTTTCAGAAACAGACATACACATTCTCAAGCATGACTTAACCTGTGTGAACGCATTGCAATCGGGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028306.13 |
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