Pregenerated sensors for LCN4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026919Ensembl transcript IDs: ENSMUST00000028283.2
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR-3UTR CCA 90 bp | TTTATTGGATTCAGAGGGGTCTCAGAGCAAGGGTTAGAAGGTAAATCAGGAGCTAGTCCACTAAGGTCATaGTCAGGTCCTACTGGCAAG | + |
Preference number: 2 (lower is better) Translates to: FIGFRGVSEQGLEGKSGASPLRS*SGPTGK Trigger: CTTGCCAGTAGGACCTGACCATGACCTTAGTGGACT...AGCTCCTGATTTACCTTCTAACCCTTGCTCTGAGACCCCTCTGAATCCAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS-3UTR TCA 90 bp | GTAAATCAGGAGCTTAGGAAGTCCAGAGGGTGGTACAATTTAAGGAGTAGAACACAAAAGGCACTGTATTaGCCAGGCTCCTCTGTTCTC | + |
Preference number: 4 (lower is better) Translates to: VNQELRKSRGWYNLRSRTQKALY*PGSSVL Trigger: GAGAACAGAGGAGCCTGGTCAATACAGTGCCTTTTG...TGTTCTACTCCTTAAATTGTACCACCCTCTGGACTTCCTAAGCTCCTGATTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
3UTR CAA 72 bp | AGAACACAGATTGGGGAAATGCAGCTCAGAGAAATGTaGTCCAGGAAGAATAGTAGTCAGTCCACTAAGGTC | + |
Preference number: 4 (lower is better) Translates to: RTQIGEMQLREM*SRKNSSQSTKV Trigger: GACCTTAGTGGACTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTGTGTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS-3UTR TCA 90 bp | TTTATTGGATTCAGAGGGGTCTCAGAGCAAGGGTTAGAAGGTAAATCAGGAGCTTATCTTCTTCTGAGATaGAGGGAAGGTCATCATAGG | + |
Preference number: 4 (lower is better) Translates to: FIGFRGVSEQGLEGKSGAYLLLR*REGHHR Trigger: CCTATGATGACCTTCCCTTCATCTCAGAAGAAGATA...AGCTCCTGATTTACCTTCTAACCCTTGCTCTGAGACCCCTCTGAATCCAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS-3UTR TCA 90 bp | CAGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGGAGTTTATCTTCTTCTaGGATGAAGGGAAGGTCATC | + |
Preference number: 4 (lower is better) Translates to: QIGEMQLREMLSRKNSSQEFIFF*DEGKVI Trigger: GATGACCTTCCCTTCATCTCAGAAGAAGATAAACTC...CTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS-3UTR TCA 90 bp | ACACAGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTTCCACTTCTCTTCTTTaGCTCACTGTGGCCTTTATG | + |
Preference number: 4 (lower is better) Translates to: TQIGEMQLREMLSRKNSSSTSLL*LTVAFM Trigger: CATAAAGGCCACAGTGAGTCAAAGAAGAGAAGTGGA...ACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS-3UTR TCA 90 bp | AGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGTGGCTTTCACAGTATATaGTGTAGTGGTCCTTCACTG | + |
Preference number: 4 (lower is better) Translates to: RLGKCSSEKCCPGRIVVSGFHSI*CSGPSL Trigger: CAGTGAAGGACCACTACATCATATACTGTGAAAGCC...ACTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS-3UTR CCA 90 bp | CAGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGACTTCCAAGGTATCCTaGTTTTCTTCCGGATACTTT | + |
Preference number: 4 (lower is better) Translates to: QIGEMQLREMLSRKNSSQTSKVS*FSSGYF Trigger: AAAGTATCCGGAAGAAAACCAGGATACCTTGGAAGT...CTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS-3UTR TCA 90 bp | GTAAATCAGGAGCTTAGGAAGTCCAGAGGGTGGTACAATTTAAGGAGTAGAACAAATTGGGATATTTTCTaGAACGGATGGCTTTCACAG | + |
Preference number: 4 (lower is better) Translates to: VNQELRKSRGWYNLRSRTNWDIF*NGWLSQ Trigger: CTGTGAAAGCCATCCGTTTCAGAAAATATCCCAATT...TGTTCTACTCCTTAAATTGTACCACCCTCTGGACTTCCTAAGCTCCTGATTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS-3UTR GCA 90 bp | TCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGTCCACTAAGGTCATGGTCAAAATTTAATAGGAAATaGAACCAGAGTCTCCCCCTC | + |
Preference number: 4 (lower is better) Translates to: SEKCCPGRIVVSPLRSWSKFNRK*NQSLPL Trigger: GAGGGGGAGACTCTGGTTGCATTTCCTATTAAATTT...TGACCATGACCTTAGTGGACTGACTACTATTCTTCCTGGACAACATTTCTCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS-3UTR CCA 90 bp | CAGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGCAAGGTTCCTTCTTCTaGGCATGTAAATTTAATAGG | + |
Preference number: 4 (lower is better) Translates to: QIGEMQLREMLSRKNSSQQGSFF*ACKFNR Trigger: CCTATTAAATTTACATGCCCAGAAGAAGGAACCTTG...CTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS CCA 90 bp | TCCCTTAGATGCGAGAGTGTGCCTGAGCTCCAAGGTTCCTTCTTCTaGGCATGTAAATTTAATAGGAAATGCAACCAGAGTCTCCCCCTC | + |
Preference number: 5 (lower is better) Translates to: SLRCESVPELQGSFF*ACKFNRKCNQSLPL Trigger: GAGGGGGAGACTCTGGTTGCATTTCCTATTAAATTTACATGCCCAGAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCATCTAAGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS GCA 90 bp | TGTTCTCTGCAAACGAATTCCTACATTAATGCACTCTCCCTTAGATaGGAGAGTGTGCCTGAGCTCCAAGGTTCCTTCTTCTGGGCATGT | + |
Preference number: 5 (lower is better) Translates to: CSLQTNSYINALSLR*ESVPELQGSFFWAC Trigger: ACATGCCCAGAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCATCTAAGGGAGAGTGCATTAATGTAGGAATTCGTTTGCAGAGAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS-3UTR CAA 90 bp | AATCAGGAGCTTAGGAAGTCCAGAGGGTGGTACAATTTAAGGAGTAGAACACAGCCAAAAGGCACTGTATaGACCAGGCTCCTCTGTTCT | + |
Preference number: 5 (lower is better) Translates to: NQELRKSRGWYNLRSRTQPKGTV*TRLLCS Trigger: AGAACAGAGGAGCCTGGTCAATACAGTGCCTTTTGG...CTGTGTTCTACTCCTTAAATTGTACCACCCTCTGGACTTCCTAAGCTCCTGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS GCA 90 bp | GAGCTCCAAGGTTCCTTCTTCTGGGCATGTAAATTTAATAGGAAATaGAACCAGAGTCTCCCCCTCCACTTCTCTTCTTTGACTCACTGT | + |
Preference number: 5 (lower is better) Translates to: ELQGSFFWACKFNRK*NQSLPLHFSSLTHC Trigger: ACAGTGAGTCAAAGAAGAGAAGTGGAGGGGGAGACTCTGGTTGCATTTCCTATTAAATTTACATGCCCAGAAGAAGGAACCTTGGAGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS-3UTR CAA 90 bp | CAGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGCTCCACTTCTCTTCTTaGACTCACTGTGGCCTTTAT | + |
Preference number: 5 (lower is better) Translates to: QIGEMQLREMLSRKNSSQLHFSS*THCGLY Trigger: ATAAAGGCCACAGTGAGTCAAAGAAGAGAAGTGGAG...CTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS GCA 90 bp | AAACGAATTCCTACATTAATGCACTCTCCCTTAGATGCGAGAGTGTaGCTGAGCTCCAAGGTTCCTTCTTCTGGGCATGTAAATTTAATA | + |
Preference number: 5 (lower is better) Translates to: KRIPTLMHSPLDARV*LSSKVPSSGHVNLI Trigger: TATTAAATTTACATGCCCAGAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCATCTAAGGGAGAGTGCATTAATGTAGGAATTCGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS CCA 90 bp | AATCCTTTATGCTGTATGAATTCCTTAAATACTTCCAAGGTATCCTaGTTTTCTTCCGGATACTTTCCTATGAGATATCCAAATTGGGAT | + |
Preference number: 5 (lower is better) Translates to: NPLCCMNSLNTSKVS*FSSGYFPMRYPNWD Trigger: ATCCCAATTTGGATATCTCATAGGAAAGTATCCGGAAGAAAACCAGGATACCTTGGAAGTATTTAAGGAATTCATACAGCATAAAGGATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS GCA 72 bp | CCTACATTAATGCACTCTCCCTTAGATGCGAGAGTGTaGCTGAGCTCCAAGGTTCCTTCTTCTGGGCATGTA | + |
Preference number: 6 (lower is better) Translates to: PTLMHSPLDARV*LSSKVPSSGHV Trigger: TACATGCCCAGAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCATCTAAGGGAGAGTGCATTAATGTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS GCA 72 bp | CAAACGAATTCCTACATTAATGCACTCTCCCTTAGATaGGAGAGTGTGCCTGAGCTCCAAGGTTCCTTCTTC | + |
Preference number: 6 (lower is better) Translates to: QTNSYINALSLR*ESVPELQGSFF Trigger: GAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCATCTAAGGGAGAGTGCATTAATGTAGGAATTCGTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS CCA 72 bp | TGCGAGAGTGTGCCTGAGCTCCAAGGTTCCTTCTTCTaGGCATGTAAATTTAATAGGAAATGCAACCAGAGT | + |
Preference number: 6 (lower is better) Translates to: CESVPELQGSFF*ACKFNRKCNQS Trigger: ACTCTGGTTGCATTTCCTATTAAATTTACATGCCCAGAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS CAA 72 bp | TATATAGAAGAGAGTATGGCCCCAAAAGGCACTGTATaGACCAGGCTCCTCTGTTCTCTGCAAACGAATTCC | + |
Preference number: 6 (lower is better) Translates to: YIEESMAPKGTV*TRLLCSLQTNS Trigger: GGAATTCGTTTGCAGAGAACAGAGGAGCCTGGTCAATACAGTGCCTTTTGGGGCCATACTCTCTTCTATATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS CAA 90 bp | AAGATCATATATATAGAAGAGAGTATGGCCCCAAAAGGCACTGTATaGACCAGGCTCCTCTGTTCTCTGCAAACGAATTCCTACATTAAT | + |
Preference number: 6 (lower is better) Translates to: KIIYIEESMAPKGTV*TRLLCSLQTNSYIN Trigger: ATTAATGTAGGAATTCGTTTGCAGAGAACAGAGGAGCCTGGTCAATACAGTGCCTTTTGGGGCCATACTCTCTTCTATATATATGATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |
||
CDS TCA 72 bp | CCAAGGTATCCTGGTTTTCTTCCGGATACTTTCCTATaGGATATCCAAATTGGGATATTTTCTGAAACGGAT | + |
Preference number: 6 (lower is better) Translates to: PRYPGFLPDTFL*DIQIGIFSETD Trigger: ATCCGTTTCAGAAAATATCCCAATTTGGATATCTCATAGGAAAGTATCCGGAAGAAAACCAGGATACCTTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028283.2 |