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Pregenerated sensors for LCN4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026919

Ensembl transcript IDs: ENSMUST00000028283.2

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TTTATTGGATTCAGAGGGGTCTCAGAGCAAGGGTTAGAAGGTAAATCAGGAGCTAGTCCACTAAGGTCATaGTCAGGTCCTACTGGCAAG +
Preference number: 2 (lower is better)
Translates to: FIGFRGVSEQGLEGKSGASPLRS*SGPTGK
Trigger: CTTGCCAGTAGGACCTGACCATGACCTTAGTGGACT...AGCTCCTGATTTACCTTCTAACCCTTGCTCTGAGACCCCTCTGAATCCAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS-3UTR TCA 90 bp GTAAATCAGGAGCTTAGGAAGTCCAGAGGGTGGTACAATTTAAGGAGTAGAACACAAAAGGCACTGTATTaGCCAGGCTCCTCTGTTCTC +
Preference number: 4 (lower is better)
Translates to: VNQELRKSRGWYNLRSRTQKALY*PGSSVL
Trigger: GAGAACAGAGGAGCCTGGTCAATACAGTGCCTTTTG...TGTTCTACTCCTTAAATTGTACCACCCTCTGGACTTCCTAAGCTCCTGATTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
3UTR CAA 72 bp AGAACACAGATTGGGGAAATGCAGCTCAGAGAAATGTaGTCCAGGAAGAATAGTAGTCAGTCCACTAAGGTC +
Preference number: 4 (lower is better)
Translates to: RTQIGEMQLREM*SRKNSSQSTKV
Trigger: GACCTTAGTGGACTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTGTGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS-3UTR TCA 90 bp TTTATTGGATTCAGAGGGGTCTCAGAGCAAGGGTTAGAAGGTAAATCAGGAGCTTATCTTCTTCTGAGATaGAGGGAAGGTCATCATAGG +
Preference number: 4 (lower is better)
Translates to: FIGFRGVSEQGLEGKSGAYLLLR*REGHHR
Trigger: CCTATGATGACCTTCCCTTCATCTCAGAAGAAGATA...AGCTCCTGATTTACCTTCTAACCCTTGCTCTGAGACCCCTCTGAATCCAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS-3UTR TCA 90 bp CAGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGGAGTTTATCTTCTTCTaGGATGAAGGGAAGGTCATC +
Preference number: 4 (lower is better)
Translates to: QIGEMQLREMLSRKNSSQEFIFF*DEGKVI
Trigger: GATGACCTTCCCTTCATCTCAGAAGAAGATAAACTC...CTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS-3UTR TCA 90 bp ACACAGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTTCCACTTCTCTTCTTTaGCTCACTGTGGCCTTTATG +
Preference number: 4 (lower is better)
Translates to: TQIGEMQLREMLSRKNSSSTSLL*LTVAFM
Trigger: CATAAAGGCCACAGTGAGTCAAAGAAGAGAAGTGGA...ACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS-3UTR TCA 90 bp AGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGTGGCTTTCACAGTATATaGTGTAGTGGTCCTTCACTG +
Preference number: 4 (lower is better)
Translates to: RLGKCSSEKCCPGRIVVSGFHSI*CSGPSL
Trigger: CAGTGAAGGACCACTACATCATATACTGTGAAAGCC...ACTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS-3UTR CCA 90 bp CAGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGACTTCCAAGGTATCCTaGTTTTCTTCCGGATACTTT +
Preference number: 4 (lower is better)
Translates to: QIGEMQLREMLSRKNSSQTSKVS*FSSGYF
Trigger: AAAGTATCCGGAAGAAAACCAGGATACCTTGGAAGT...CTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS-3UTR TCA 90 bp GTAAATCAGGAGCTTAGGAAGTCCAGAGGGTGGTACAATTTAAGGAGTAGAACAAATTGGGATATTTTCTaGAACGGATGGCTTTCACAG +
Preference number: 4 (lower is better)
Translates to: VNQELRKSRGWYNLRSRTNWDIF*NGWLSQ
Trigger: CTGTGAAAGCCATCCGTTTCAGAAAATATCCCAATT...TGTTCTACTCCTTAAATTGTACCACCCTCTGGACTTCCTAAGCTCCTGATTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS-3UTR GCA 90 bp TCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGTCCACTAAGGTCATGGTCAAAATTTAATAGGAAATaGAACCAGAGTCTCCCCCTC +
Preference number: 4 (lower is better)
Translates to: SEKCCPGRIVVSPLRSWSKFNRK*NQSLPL
Trigger: GAGGGGGAGACTCTGGTTGCATTTCCTATTAAATTT...TGACCATGACCTTAGTGGACTGACTACTATTCTTCCTGGACAACATTTCTCTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS-3UTR CCA 90 bp CAGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGCAAGGTTCCTTCTTCTaGGCATGTAAATTTAATAGG +
Preference number: 4 (lower is better)
Translates to: QIGEMQLREMLSRKNSSQQGSFF*ACKFNR
Trigger: CCTATTAAATTTACATGCCCAGAAGAAGGAACCTTG...CTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS CCA 90 bp TCCCTTAGATGCGAGAGTGTGCCTGAGCTCCAAGGTTCCTTCTTCTaGGCATGTAAATTTAATAGGAAATGCAACCAGAGTCTCCCCCTC +
Preference number: 5 (lower is better)
Translates to: SLRCESVPELQGSFF*ACKFNRKCNQSLPL
Trigger: GAGGGGGAGACTCTGGTTGCATTTCCTATTAAATTTACATGCCCAGAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCATCTAAGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS GCA 90 bp TGTTCTCTGCAAACGAATTCCTACATTAATGCACTCTCCCTTAGATaGGAGAGTGTGCCTGAGCTCCAAGGTTCCTTCTTCTGGGCATGT +
Preference number: 5 (lower is better)
Translates to: CSLQTNSYINALSLR*ESVPELQGSFFWAC
Trigger: ACATGCCCAGAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCATCTAAGGGAGAGTGCATTAATGTAGGAATTCGTTTGCAGAGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS-3UTR CAA 90 bp AATCAGGAGCTTAGGAAGTCCAGAGGGTGGTACAATTTAAGGAGTAGAACACAGCCAAAAGGCACTGTATaGACCAGGCTCCTCTGTTCT +
Preference number: 5 (lower is better)
Translates to: NQELRKSRGWYNLRSRTQPKGTV*TRLLCS
Trigger: AGAACAGAGGAGCCTGGTCAATACAGTGCCTTTTGG...CTGTGTTCTACTCCTTAAATTGTACCACCCTCTGGACTTCCTAAGCTCCTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS GCA 90 bp GAGCTCCAAGGTTCCTTCTTCTGGGCATGTAAATTTAATAGGAAATaGAACCAGAGTCTCCCCCTCCACTTCTCTTCTTTGACTCACTGT +
Preference number: 5 (lower is better)
Translates to: ELQGSFFWACKFNRK*NQSLPLHFSSLTHC
Trigger: ACAGTGAGTCAAAGAAGAGAAGTGGAGGGGGAGACTCTGGTTGCATTTCCTATTAAATTTACATGCCCAGAAGAAGGAACCTTGGAGCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS-3UTR CAA 90 bp CAGATTGGGGAAATGCAGCTCAGAGAAATGTTGTCCAGGAAGAATAGTAGTCAGCTCCACTTCTCTTCTTaGACTCACTGTGGCCTTTAT +
Preference number: 5 (lower is better)
Translates to: QIGEMQLREMLSRKNSSQLHFSS*THCGLY
Trigger: ATAAAGGCCACAGTGAGTCAAAGAAGAGAAGTGGAG...CTGACTACTATTCTTCCTGGACAACATTTCTCTGAGCTGCATTTCCCCAATCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS GCA 90 bp AAACGAATTCCTACATTAATGCACTCTCCCTTAGATGCGAGAGTGTaGCTGAGCTCCAAGGTTCCTTCTTCTGGGCATGTAAATTTAATA +
Preference number: 5 (lower is better)
Translates to: KRIPTLMHSPLDARV*LSSKVPSSGHVNLI
Trigger: TATTAAATTTACATGCCCAGAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCATCTAAGGGAGAGTGCATTAATGTAGGAATTCGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS CCA 90 bp AATCCTTTATGCTGTATGAATTCCTTAAATACTTCCAAGGTATCCTaGTTTTCTTCCGGATACTTTCCTATGAGATATCCAAATTGGGAT +
Preference number: 5 (lower is better)
Translates to: NPLCCMNSLNTSKVS*FSSGYFPMRYPNWD
Trigger: ATCCCAATTTGGATATCTCATAGGAAAGTATCCGGAAGAAAACCAGGATACCTTGGAAGTATTTAAGGAATTCATACAGCATAAAGGATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS GCA 72 bp CCTACATTAATGCACTCTCCCTTAGATGCGAGAGTGTaGCTGAGCTCCAAGGTTCCTTCTTCTGGGCATGTA +
Preference number: 6 (lower is better)
Translates to: PTLMHSPLDARV*LSSKVPSSGHV
Trigger: TACATGCCCAGAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCATCTAAGGGAGAGTGCATTAATGTAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS GCA 72 bp CAAACGAATTCCTACATTAATGCACTCTCCCTTAGATaGGAGAGTGTGCCTGAGCTCCAAGGTTCCTTCTTC +
Preference number: 6 (lower is better)
Translates to: QTNSYINALSLR*ESVPELQGSFF
Trigger: GAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCATCTAAGGGAGAGTGCATTAATGTAGGAATTCGTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS CCA 72 bp TGCGAGAGTGTGCCTGAGCTCCAAGGTTCCTTCTTCTaGGCATGTAAATTTAATAGGAAATGCAACCAGAGT +
Preference number: 6 (lower is better)
Translates to: CESVPELQGSFF*ACKFNRKCNQS
Trigger: ACTCTGGTTGCATTTCCTATTAAATTTACATGCCCAGAAGAAGGAACCTTGGAGCTCAGGCACACTCTCGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS CAA 72 bp TATATAGAAGAGAGTATGGCCCCAAAAGGCACTGTATaGACCAGGCTCCTCTGTTCTCTGCAAACGAATTCC +
Preference number: 6 (lower is better)
Translates to: YIEESMAPKGTV*TRLLCSLQTNS
Trigger: GGAATTCGTTTGCAGAGAACAGAGGAGCCTGGTCAATACAGTGCCTTTTGGGGCCATACTCTCTTCTATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS CAA 90 bp AAGATCATATATATAGAAGAGAGTATGGCCCCAAAAGGCACTGTATaGACCAGGCTCCTCTGTTCTCTGCAAACGAATTCCTACATTAAT +
Preference number: 6 (lower is better)
Translates to: KIIYIEESMAPKGTV*TRLLCSLQTNSYIN
Trigger: ATTAATGTAGGAATTCGTTTGCAGAGAACAGAGGAGCCTGGTCAATACAGTGCCTTTTGGGGCCATACTCTCTTCTATATATATGATCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2
CDS TCA 72 bp CCAAGGTATCCTGGTTTTCTTCCGGATACTTTCCTATaGGATATCCAAATTGGGATATTTTCTGAAACGGAT +
Preference number: 6 (lower is better)
Translates to: PRYPGFLPDTFL*DIQIGIFSETD
Trigger: ATCCGTTTCAGAAAATATCCCAATTTGGATATCTCATAGGAAAGTATCCGGAAGAAAACCAGGATACCTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028283.2