Pregenerated sensors for LCN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026936Ensembl transcript IDs: ENSMUST00000028304.4, ENSMUST00000239498.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGACATGCTGGCGGCGAAGAGTCCTGGGCCTaGAGGACAGCAACCAGACAG | + |
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Preference number: 4 (lower is better) Translates to: EDPAGHSFHLPWDRHAGGEESWA*RTATRQ Trigger: CTGTCTGGTTGCTGTCCTGCAGGCCCAGGACTCTTC...GCCGCCAGCATGTCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR GCA 90 bp | GTCGGAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGACATGCTGGGAAGAGTCCTGGGCCTaGAGGACAGCAACCAGACAG | + |
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Preference number: 4 (lower is better) Translates to: VGGSSRPLFPPPMGQTCWEESWA*RTATRQ Trigger: CTGTCTGGTTGCTGTCCTGCAGGCCCAGGACTCTTC...CCAGCATGTCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTCCGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR CCA 90 bp | GAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGACATGCTGGCGGCAGGAATGAAGAGTCCTaGGCCTGCAGGACAGCAACC | + |
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Preference number: 4 (lower is better) Translates to: EDPAGHSFHLPWDRHAGGRNEES*ACRTAT Trigger: GGTTGCTGTCCTGCAGGCCCAGGACTCTTCATTCCT...GCCGCCAGCATGTCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR TCA 90 bp | GAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGACATGCTGGCGGCATTGAAAGCCAGGAATaGAGAGTCCTGGGCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: EDPAGHSFHLPWDRHAGGIESQE*RVLGLQ Trigger: CTGCAGGCCCAGGACTCTTCATTCCTGGCTTTCAAT...GCCGCCAGCATGTCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR GCA 90 bp | GAAGGGGAGTCGGAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGAGAAGACAGCTGCACCTaGAGGTGGGTCTTACCCTCA | + |
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Preference number: 4 (lower is better) Translates to: EGESEDPAGHSFHLPWDREDSCT*RWVLPS Trigger: TGAGGGTAAGACCCACCTGCAGGTGCAGCTGTCTTC...TCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTCCGACTCCCCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR GCA 90 bp | GTCGGAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGACATGCTGGGAAGACAGCTGCACCTaGAGGTGGGTCTTACCCTCA | + |
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Preference number: 4 (lower is better) Translates to: VGGSSRPLFPPPMGQTCWEDSCT*RWVLPS Trigger: TGAGGGTAAGACCCACCTGCAGGTGCAGCTGTCTTC...CCAGCATGTCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTCCGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR TCA 90 bp | AAGGGGAGTCGGAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGACATTGAAAGCCAGGAATaGAGAGTCCTGGGCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: KGSRRIQQATLSTSHGTDIESQE*RVLGLQ Trigger: CTGCAGGCCCAGGACTCTTCATTCCTGGCTTTCAAT...GTCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTCCGACTCCCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR CCA 90 bp | GAGTCGGAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGACATGCTAGGAATGAAGAGTCCTaGGCCTGCAGGACAGCAACC | + |
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Preference number: 4 (lower is better) Translates to: ESEDPAGHSFHLPWDRHARNEES*ACRTAT Trigger: GGTTGCTGTCCTGCAGGCCCAGGACTCTTCATTCCT...AGCATGTCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTCCGACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR GCA 90 bp | GAAGGGGAGTCGGAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGATTCACAGAAGACAGCTaGACCTGCAGGTGGGTCTTA | + |
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Preference number: 4 (lower is better) Translates to: EGESEDPAGHSFHLPWDRFTEDS*TCRWVL Trigger: TAAGACCCACCTGCAGGTGCAGCTGTCTTCTGTGAA...TCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTCCGACTCCCCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR CCA 90 bp | AGAGAAGGGGAGTCGGAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACTCAAAGGCAAGGTACTaGCCAGGCACATCTGTTTTC | + |
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Preference number: 4 (lower is better) Translates to: REGESEDPAGHSFHLPWDSKARY*PGTSVF Trigger: GAAAACAGATGTGCCTGGCCAGTACCTTGCCTTTGA...GTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTCCGACTCCCCTTCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR CCA 90 bp | TCGGAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGACATGCTGGCTCAAAGGCAAGGTACTaGCCAGGCACATCTGTTTTC | + |
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Preference number: 4 (lower is better) Translates to: SEDPAGHSFHLPWDRHAGSKARY*PGTSVF Trigger: GAAAACAGATGTGCCTGGCCAGTACCTTGCCTTTGA...GCCAGCATGTCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTCCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR CCA 90 bp | GGAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGACATGCTGGCGGCTCGTAGAAACTCTCTaGTTCACATTTTTCCATCTG | + |
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Preference number: 4 (lower is better) Translates to: GGSSRPLFPPPMGQTCWRLVETL*FTFFHL Trigger: CAGATGGAAAAATGTGAACCAGAGAGTTTCTACGAG...CCGCCAGCATGTCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR CAA 90 bp | AGAGAAGGGGAGTCGGAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACGAAAAATTCCCATTATaGAAAGCCAGGAATGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: REGESEDPAGHSFHLPWDEKFPL*KARNEE Trigger: CTCTTCATTCCTGGCTTTCAATAATGGGAATTTTTC...GTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTCCGACTCCCCTTCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS-3UTR CAA 90 bp | GAGTCGGAGGATCCAGCAGGCCACTCTTTCCACCTCCCATGGGACAGACATGCTGAAAAATTCCCATTATaGAAAGCCAGGAATGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: ESEDPAGHSFHLPWDRHAEKFPL*KARNEE Trigger: CTCTTCATTCCTGGCTTTCAATAATGGGAATTTTTC...AGCATGTCTGTCCCATGGGAGGTGGAAAGAGTGGCCTGCTGGATCCTCCGACTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS GCA 90 bp | GAAAAATTCCCATTATTGAAAGCCAGGAATGAAGAGTCCTGGGCCTaGAGGACAGCAACCAGACAGAAGCTAATGATCAGGAGCAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: EKFPLLKARNEESWA*RTATRQKLMIRSRA Trigger: GGCTCTGCTCCTGATCATTAGCTTCTGTCTGGTTGCTGTCCTGCAGGCCCAGGACTCTTCATTCCTGGCTTTCAATAATGGGAATTTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS CCA 90 bp | TTTCCGGAAAAATTCCCATTATTGAAAGCCAGGAATGAAGAGTCCTaGGCCTGCAGGACAGCAACCAGACAGAAGCTAATGATCAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: FPEKFPLLKARNEES*ACRTATRQKLMIRS Trigger: GCTCCTGATCATTAGCTTCTGTCTGGTTGCTGTCCTGCAGGCCCAGGACTCTTCATTCCTGGCTTTCAATAATGGGAATTTTTCCGGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS TCA 90 bp | CAGGAACCATTTTCCGGAAAAATTCCCATTATTGAAAGCCAGGAATaGAGAGTCCTGGGCCTGCAGGACAGCAACCAGACAGAAGCTAAT | + |
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Preference number: 5 (lower is better) Translates to: QEPFSGKIPIIESQE*RVLGLQDSNQTEAN Trigger: ATTAGCTTCTGTCTGGTTGCTGTCCTGCAGGCCCAGGACTCTTCATTCCTGGCTTTCAATAATGGGAATTTTTCCGGAAAATGGTTCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS CAA 72 bp | GCCTTCAGGAACCATTTTCCGGAAAAATTCCCATTATaGAAAGCCAGGAATGAAGAGTCCTGGGCCTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: AFRNHFPEKFPL*KARNEESWACR Trigger: CCTGCAGGCCCAGGACTCTTCATTCCTGGCTTTCAATAATGGGAATTTTTCCGGAAAATGGTTCCTGAAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS TCA 72 bp | TTTTCCGGAAAAATTCCCATTATTGAAAGCCAGGAATaGAGAGTCCTGGGCCTGCAGGACAGCAACCAGACA | + |
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Preference number: 6 (lower is better) Translates to: FSGKIPIIESQE*RVLGLQDSNQT Trigger: TGTCTGGTTGCTGTCCTGCAGGCCCAGGACTCTTCATTCCTGGCTTTCAATAATGGGAATTTTTCCGGAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS TCA 72 bp | CCTTCAGGAACCATTTTCCGGAAAAATTCCCATTATTaGAAGCCAGGAATGAAGAGTCCTGGGCCTGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PSGTIFRKNSHY*KPGMKSPGPAG Trigger: TCCTGCAGGCCCAGGACTCTTCATTCCTGGCTTTCAATAATGGGAATTTTTCCGGAAAATGGTTCCTGAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS CCA 72 bp | AAATTCCCATTATTGAAAGCCAGGAATGAAGAGTCCTaGGCCTGCAGGACAGCAACCAGACAGAAGCTAATG | + |
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Preference number: 6 (lower is better) Translates to: KFPLLKARNEES*ACRTATRQKLM Trigger: CATTAGCTTCTGTCTGGTTGCTGTCCTGCAGGCCCAGGACTCTTCATTCCTGGCTTTCAATAATGGGAATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS CCA 72 bp | GGTACTGGCCAGGCACATCTGTTTTCTCCAAGATGGTaGTCACTTCAAGACACTGATCATAGATCATATGTG | + |
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Preference number: 6 (lower is better) Translates to: GTGQAHLFSPRW*SLQDTDHRSYV Trigger: CACATATGATCTATGATCAGTGTCTTGAAGTGACCACCATCTTGGAGAAAACAGATGTGCCTGGCCAGTACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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| CDS CCA 72 bp | CAAGGTACTGGCCAGGCACATCTGTTTTCTCCAAGATaGTGGTCACTTCAAGACACTGATCATAGATCATAT | + |
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Preference number: 6 (lower is better) Translates to: QGTGQAHLFSPR*WSLQDTDHRSY Trigger: ATATGATCTATGATCAGTGTCTTGAAGTGACCACCATCTTGGAGAAAACAGATGTGCCTGGCCAGTACCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028304.4 ENSMUST00000239498.2 |
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