Pregenerated sensors for LCN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026822Ensembl transcript IDs: ENSMUST00000050785.14, ENSMUST00000192241.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GACAGGTGGATGGGGAGTGCTGGCCAAATAAGAAGAGGCTCCAGATaGTCCTTGGTATGGTGGCTGGTGGGGCAGCCAGGTGGCTCTCTG | + |
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Preference number: 1 (lower is better) Translates to: DRWMGSAGQIRRGSR*SLVWWLVGQPGGSL Trigger: CAGAGAGCCACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCTGGAGCCTCTTCTTATTTGGCCAGCACTCCCCATCCACCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR CCA 90 bp | AGGCTCCAGATGCTCCTTGGTATGGTGGCTGGTGGGGCAGCCAGGTaGCTCTCTGGCAACAGGAAAGATGGAGTGGCAGACAGACAGGCA | + |
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Preference number: 1 (lower is better) Translates to: RLQMLLGMVAGGAAR*LSGNRKDGVADRQA Trigger: TGCCTGTCTGTCTGCCACTCCATCTTTCCTGTTGCCAGAGAGCCACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCTGGAGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR TCA 90 bp | CTCTGGCAACAGGAAAGATGGAGTGGCAGACAGACAGGCAGCGCCTaGACCATTGGGTCTCTGCGCATCCCAGTCAGCCACACTCACCAC | + |
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Preference number: 1 (lower is better) Translates to: LWQQERWSGRQTGSA*TIGSLRIPVSHTHH Trigger: GTGGTGAGTGTGGCTGACTGGGATGCGCAGAGACCCAATGGTTCAGGCGCTGCCTGTCTGTCTGCCACTCCATCTTTCCTGTTGCCAGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR CCA 90 bp | GGGAGTGCTGGCCAAATAAGAAGAGGCTCCAGATGCTCCTTGGTATaGTGGCTGGTGGGGCAGCCAGGTGGCTCTCTGGCAACAGGAAAG | + |
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Preference number: 1 (lower is better) Translates to: GSAGQIRRGSRCSLV*WLVGQPGGSLATGK Trigger: CTTTCCTGTTGCCAGAGAGCCACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCTGGAGCCTCTTCTTATTTGGCCAGCACTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR-3UTR GCA 90 bp | GCTGGTGGGGCAGCCAGGTGGCTCTCTGGCAACAGGAAAGATGGAGTGGCAGACGAACCATTGGGTCTCTaGGCATCCCAGTCAGCCACA | + |
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Preference number: 2 (lower is better) Translates to: AGGAARWLSGNRKDGVADEPLGL*ASQSAT Trigger: TGTGGCTGACTGGGATGCGCAGAGACCCAATGGTTC...GTCTGCCACTCCATCTTTCCTGTTGCCAGAGAGCCACCTGGCTGCCCCACCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR CAA 90 bp | TGGATGGGGAGTGCTGGCCAAATAAGAAGAGGCTCCAGATGCTCCTaGGTATGGTGGCTGGTGGGGCAGCCAGGTGGCTCTCTGGCAACA | + |
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Preference number: 2 (lower is better) Translates to: WMGSAGQIRRGSRCS*VWWLVGQPGGSLAT Trigger: TGTTGCCAGAGAGCCACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCTGGAGCCTCTTCTTATTTGGCCAGCACTCCCCATCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR-3UTR CAA 90 bp | GCTGGTGGGGCAGCCAGGTGGCTCTCTGGCAACAGGAAAGATGGAGTGGCAGACGCAGCGCCTGAACCATaGGGTCTCTGCGCATCCCAG | + |
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Preference number: 3 (lower is better) Translates to: AGGAARWLSGNRKDGVADAAPEP*GLCASQ Trigger: CTGGGATGCGCAGAGACCCAATGGTTCAGGCGCTGC...GTCTGCCACTCCATCTTTCCTGTTGCCAGAGAGCCACCTGGCTGCCCCACCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR CCA 72 bp | ATGGAGTGGCAGACAGACAGGCAGCGCCTGAACCATTaGGTCTCTGCGCATCCCAGTCAGCCACACTCACCA | + |
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Preference number: 3 (lower is better) Translates to: MEWQTDRQRLNH*VSAHPSQPHSP Trigger: TGGTGAGTGTGGCTGACTGGGATGCGCAGAGACCCAATGGTTCAGGCGCTGCCTGTCTGTCTGCCACTCCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR CCA 72 bp | GGCCAAATAAGAAGAGGCTCCAGATGCTCCTTGGTATaGTGGCTGGTGGGGCAGCCAGGTGGCTCTCTGGCA | + |
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Preference number: 3 (lower is better) Translates to: GQIRRGSRCSLV*WLVGQPGGSLA Trigger: TGCCAGAGAGCCACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCTGGAGCCTCTTCTTATTTGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR GCA 72 bp | ATGGGGAGTGCTGGCCAAATAAGAAGAGGCTCCAGATaGTCCTTGGTATGGTGGCTGGTGGGGCAGCCAGGT | + |
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Preference number: 3 (lower is better) Translates to: MGSAGQIRRGSR*SLVWWLVGQPG Trigger: ACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCTGGAGCCTCTTCTTATTTGGCCAGCACTCCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR CCA 72 bp | CAAATAAGAAGAGGCTCCAGATGCTCCTTGGTATGGTaGCTGGTGGGGCAGCCAGGTGGCTCTCTGGCAACA | + |
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Preference number: 3 (lower is better) Translates to: QIRRGSRCSLVW*LVGQPGGSLAT Trigger: TGTTGCCAGAGAGCCACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCTGGAGCCTCTTCTTATTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR CCA 72 bp | CCATTGGTGGTGTTAAGACAGGTGGATGGGGAGTGCTaGCCAAATAAGAAGAGGCTCCAGATGCTCCTTGGT | + |
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Preference number: 3 (lower is better) Translates to: PLVVLRQVDGEC*PNKKRLQMLLG Trigger: ACCAAGGAGCATCTGGAGCCTCTTCTTATTTGGCCAGCACTCCCCATCCACCTGTCTTAACACCACCAATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS-3UTR GCA 90 bp | TTGGTATGGTGGCTGGTGGGGCAGCCAGGTGGCTCTCTGGCAACAGGAAAGATGTCCTGGGCCTGGCTCTaGAGGACCCCAAGCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LVWWLVGQPGGSLATGKMSWAWL*RTPSRA Trigger: TGCCCTGCTTGGGGTCCTGCAGAGCCAGGCCCAGGA...CATCTTTCCTGTTGCCAGAGAGCCACCTGGCTGCCCCACCAGCCACCATACCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS-3UTR CCA 90 bp | GGGGCAGCCAGGTGGCTCTCTGGCAACAGGAAAGATGGAGTGGCAGACAGACAGGTTGAGTCCTGGGCCTaGCTCTGCAGGACCCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: GAARWLSGNRKDGVADRQVESWA*LCRTPS Trigger: GCTTGGGGTCCTGCAGAGCCAGGCCCAGGACTCAAC...CTGTCTGTCTGCCACTCCATCTTTCCTGTTGCCAGAGAGCCACCTGGCTGCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS-3UTR TCA 90 bp | GCAGCGCCTGAACCATTGGGTCTCTGCGCATCCCAGTCAGCCACACTCACCACCGCAGGGATCAAGTTCTaGGTTGAGTCCTGGGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: AAPEPLGLCASQSATLTTAGIKF*VESWAW Trigger: CCAGGCCCAGGACTCAACTCAGAACTTGATCCCTGC...GGTGGTGAGTGTGGCTGACTGGGATGCGCAGAGACCCAATGGTTCAGGCGCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS-3UTR TCA 90 bp | AGAGGCTCCAGATGCTCCTTGGTATGGTGGCTGGTGGGGCAGCCAGGTGGCTCTGCATATTTCCCAGAGTaGACTGGCCAGCCCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: RGSRCSLVWWLVGQPGGSAYFPE*TGQPWS Trigger: GCTCCAGGGCTGGCCAGTTCACTCTGGGAAATATGC...AGAGCCACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCTGGAGCCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS-3UTR CCA 90 bp | TGGGGCAGCCAGGTGGCTCTCTGGCAACAGGAAAGATGGAGTGGCAGACAGACACGACAGCCCTGGTCCTaGTCCCTGACCAGGATGGAG | + |
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Preference number: 4 (lower is better) Translates to: WGSQVALWQQERWSGRQTRQPWS*SLTRME Trigger: CTCCATCCTGGTCAGGGACCAGGACCAGGGCTGTCG...TGTCTGTCTGCCACTCCATCTTTCCTGTTGCCAGAGAGCCACCTGGCTGCCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR CAA 72 bp | GATGGAGTGGCAGACAGACAGGCAGCGCCTGAACCATaGGGTCTCTGCGCATCCCAGTCAGCCACACTCACC | + |
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Preference number: 4 (lower is better) Translates to: DGVADRQAAPEP*GLCASQSATLT Trigger: GGTGAGTGTGGCTGACTGGGATGCGCAGAGACCCAATGGTTCAGGCGCTGCCTGTCTGTCTGCCACTCCATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS-3UTR CCA 90 bp | GAAGAGGCTCCAGATGCTCCTTGGTATGGTGGCTGGTGGGGCAGCCAGGTGGCTTTTCCCAGAGTGAACTaGCCAGCCCTGGAGCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: EEAPDAPWYGGWWGSQVAFPRVN*PALELG Trigger: TCCAAGCTCCAGGGCTGGCCAGTTCACTCTGGGAAA...AGCCACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCTGGAGCCTCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS-3UTR TCA 90 bp | AGATGCTCCTTGGTATGGTGGCTGGTGGGGCAGCCAGGTGGCTCTCTGGCAACAGATCAAGTTCTGAGTTaGGTCCTGGGCCTGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: RCSLVWWLVGQPGGSLATDQVLS*VLGLAL Trigger: CAGAGCCAGGCCCAGGACTCAACTCAGAACTTGATC...TGTTGCCAGAGAGCCACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| 3UTR CAA 72 bp | AGTGCTGGCCAAATAAGAAGAGGCTCCAGATGCTCCTaGGTATGGTGGCTGGTGGGGCAGCCAGGTGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: SAGQIRRGSRCS*VWWLVGQPGGS Trigger: AGAGCCACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCTGGAGCCTCTTCTTATTTGGCCAGCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS-3UTR CCA 90 bp | GCAGCCAGGTGGCTCTCTGGCAACAGGAAAGATGGAGTGGCAGACAGACAGGCAGACAGTGAGCAGAGATaGGGCAGGGATCAAGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: AARWLSGNRKDGVADRQADSEQR*GRDQVL Trigger: CAGAACTTGATCCCTGCCCCATCTCTGCTCACTGTC...TGCCTGTCTGTCTGCCACTCCATCTTTCCTGTTGCCAGAGAGCCACCTGGCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS-3UTR CCA 90 bp | GGGGCAGCCAGGTGGCTCTCTGGCAACAGGAAAGATGGAGTGGCAGACAGACAGGCCAGCCCTGGAGCTTaGAACAAATGTTCTGATCCA | + |
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Preference number: 4 (lower is better) Translates to: GAARWLSGNRKDGVADRQASPGA*NKCSDP Trigger: TGGATCAGAACATTTGTTCCAAGCTCCAGGGCTGGC...CTGTCTGTCTGCCACTCCATCTTTCCTGTTGCCAGAGAGCCACCTGGCTGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS TCA 90 bp | ACCGCATTGCCTGCCAGGCCCACAACGTACCACCTGCCCCGGAACTaGTCGCTCCGGAAGTCTGGCTGCAGGGGGACAGTGAGCAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: TALPARPTTYHLPRN*SLRKSGCRGTVSRD Trigger: ATCTCTGCTCACTGTCCCCCTGCAGCCAGACTTCCGGAGCGATCAGTTCCGGGGCAGGTGGTACGTTGTGGGCCTGGCAGGCAATGCGGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050785.14 ENSMUST00000192241.2 |
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| CDS CCA 90 bp | GGGGACAGAGGGGGACCAGAGGGACATTCCCAGGGCTTTGGATTCTaGCAGGCACAGGGCACTGCTTGTGGGTCAGCAGCTCAGATCTGG | + |
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Preference number: 5 (lower is better) Translates to: GDRGGPEGHSQGFGF*QAQGTACGSAAQIW Trigger: CCAGATCTGAGCTGCTGACCCACAAGCAGTGCCCTGTGCCTGCCAGAATCCAAAGCCCTGGGAATGTCCCTCTGGTCCCCCTCTGTCCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000192241.2 |
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| CDS GCA 90 bp | AGAGGGACATTCCCAGGGCTTTGGATTCTGGCAGGCACAGGGCACTaGTTGTGGGTCAGCAGCTCAGATCTGGACTGCCTGTCCACTCCC | + |
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Preference number: 5 (lower is better) Translates to: RGTFPGLWILAGTGH*LWVSSSDLDCLSTP Trigger: GGGAGTGGACAGGCAGTCCAGATCTGAGCTGCTGACCCACAAGCAGTGCCCTGTGCCTGCCAGAATCCAAAGCCCTGGGAATGTCCCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192241.2 |
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| CDS-3UTR CAA 90 bp | CCAGGTGGCTCTCTGGCAACAGGAAAGATGGAGTGGCAGACAGACAGGCAGCGCTTGAGGCCCAGAGACTaGGCAAAGCGGGTGAAACGT | + |
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Preference number: 5 (lower is better) Translates to: PGGSLATGKMEWQTDRQRLRPRD*AKRVKR Trigger: ACGTTTCACCCGCTTTGCCAAGTCTCTGGGCCTCAA...GCGCTGCCTGTCTGTCTGCCACTCCATCTTTCCTGTTGCCAGAGAGCCACCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS-3UTR CAA 90 bp | GGGGCAGCCAGGTGGCTCTCTGGCAACAGGAAAGATGGAGTGGCAGACAGACAGTCAGGGGACAGCTCCTaGGTTCTTCCATACAGGGTA | + |
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Preference number: 5 (lower is better) Translates to: GAARWLSGNRKDGVADRQSGDSS*VLPYRV Trigger: TACCCTGTATGGAAGAACCAAGGAGCTGTCCCCTGA...CTGTCTGTCTGCCACTCCATCTTTCCTGTTGCCAGAGAGCCACCTGGCTGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS-3UTR CAA 90 bp | GAAGAGGCTCCAGATGCTCCTTGGTATGGTGGCTGGTGGGGCAGCCAGGTGGCTTCAGTTGTCAATGCATaGGTCGGTGGGGACAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: EEAPDAPWYGGWWGSQVASVVNA*VGGDRE Trigger: TTCTCTGTCCCCACCGACCAATGCATTGACAACTGA...AGCCACCTGGCTGCCCCACCAGCCACCATACCAAGGAGCATCTGGAGCCTCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS CCA 90 bp | ATACCTGTGCATATTTCCCAGAGTGAACTGGCCAGCCCTGGAGCTTaGAACAAATGTTCTGATCCAGTAGCGACAGCCCTGGTCCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: IPVHISQSELASPGA*NKCSDPVATALVLV Trigger: GACCAGGACCAGGGCTGTCGCTACTGGATCAGAACATTTGTTCCAAGCTCCAGGGCTGGCCAGTTCACTCTGGGAAATATGCACAGGTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050785.14 ENSMUST00000192241.2 |
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| CDS TCA 90 bp | TGTGCAAGTCCAGGAAGCCATGAAGTAATTGCCAGTACATTCTGTTaGAATACTTGGCAAGATTTCTGTCCCTCTCTCCCCCAGGTCGGA | + |
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Preference number: 5 (lower is better) Translates to: CASPGSHEVIASTFC*NTWQDFCPSLPQVG Trigger: TCCGACCTGGGGGAGAGAGGGACAGAAATCTTGCCAAGTATTTCAACAGAATGTACTGGCAATTACTTCATGGCTTCCTGGACTTGCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000192241.2 |
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| CDS TCA 90 bp | GTTTCCACAGCTACTAGGTCTGATGTGTGCAAGTCCAGGAAGCCATaGAGTAATTGCCAGTACATTCTGTTGAAATACTTGGCAAGATTT | + |
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Preference number: 5 (lower is better) Translates to: VSTATRSDVCKSRKP*SNCQYILLKYLARF Trigger: AAATCTTGCCAAGTATTTCAACAGAATGTACTGGCAATTACTTCATGGCTTCCTGGACTTGCACACATCAGACCTAGTAGCTGTGGAAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192241.2 |
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| CDS TCA 72 bp | CCTGCCAGGCCCACAACGTACCACCTGCCCCGGAACTaGTCGCTCCGGAAGTCTGGCTGCAGGGGGACAGTG | + |
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Preference number: 6 (lower is better) Translates to: PARPTTYHLPRN*SLRKSGCRGTV Trigger: CACTGTCCCCCTGCAGCCAGACTTCCGGAGCGATCAGTTCCGGGGCAGGTGGTACGTTGTGGGCCTGGCAGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050785.14 ENSMUST00000192241.2 |
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| CDS GCA 72 bp | GGACCGCATTGCCTGCCAGGCCCACAACGTACCACCTaGCCCGGAACTGATCGCTCCGGAAGTCTGGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: GPHCLPGPQRTT*PGTDRSGSLAA Trigger: TGCAGCCAGACTTCCGGAGCGATCAGTTCCGGGGCAGGTGGTACGTTGTGGGCCTGGCAGGCAATGCGGTCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050785.14 ENSMUST00000192241.2 |
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| CDS CCA 72 bp | GGACAGAGGGGGACCAGAGGGACATTCCCAGGGCTTTaGATTCTGGCAGGCACAGGGCACTGCTTGTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: GQRGTRGTFPGL*ILAGTGHCLWV Trigger: GACCCACAAGCAGTGCCCTGTGCCTGCCAGAATCCAAAGCCCTGGGAATGTCCCTCTGGTCCCCCTCTGTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000192241.2 |
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| CDS CAA 72 bp | CCAGGGCTTTGGATTCTGGCAGGCACAGGGCACTGCTaGTGGGTCAGCAGCTCAGATCTGGACTGCCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: PGLWILAGTGHC*WVSSSDLDCLS Trigger: GGACAGGCAGTCCAGATCTGAGCTGCTGACCCACAAGCAGTGCCCTGTGCCTGCCAGAATCCAAAGCCCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192241.2 |
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| CDS TCA 72 bp | TCTGCAGGACCCCAAGCAGGGCAAGGCCCAGACACATaGCACTCAGGGCCATGGTTTCCACAGCTACTAGGT | + |
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Preference number: 6 (lower is better) Translates to: SAGPQAGQGPDT*HSGPWFPQLLG Trigger: ACCTAGTAGCTGTGGAAACCATGGCCCTGAGTGTCATGTGTCTGGGCCTTGCCCTGCTTGGGGTCCTGCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192241.2 |
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| CDS GCA 72 bp | AAGATTTCTGTCCCTCTCTCCCCCAGGTCGGAACTGTaGAAGGTTGAGCAACAGGAAGGGCTGCAGGGGACA | + |
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Preference number: 6 (lower is better) Translates to: KISVPLSPRSEL*KVEQQEGLQGT Trigger: TGTCCCCTGCAGCCCTTCCTGTTGCTCAACCTTGCACAGTTCCGACCTGGGGGAGAGAGGGACAGAAATCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000192241.2 |
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| CDS CAA 90 bp | GTGGGGACAGAGAAGATGATGTTGTCGTCCTTGAGGCCCAGAGACTaGGCAAAGCGGGTGAAACGTTCCTTCAGTTCAGGGGACAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: VGTEKMMLSSLRPRD*AKRVKRSFSSGDSS Trigger: GGAGCTGTCCCCTGAACTGAAGGAACGTTTCACCCGCTTTGCCAAGTCTCTGGGCCTCAAGGACGACAACATCATCTTCTCTGTCCCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS CAA 72 bp | TCAATGCATTGGTCGGTGGGGACAGAGAAGATGATGTaGTCGTCCTTGAGGCCCAGAGACTTGGCAAAGCGG | + |
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Preference number: 6 (lower is better) Translates to: SMHWSVGTEKMM*SSLRPRDLAKR Trigger: CCGCTTTGCCAAGTCTCTGGGCCTCAAGGACGACAACATCATCTTCTCTGTCCCCACCGACCAATGCATTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS CCA 72 bp | CATATTTCCCAGAGTGAACTGGCCAGCCCTGGAGCTTaGAACAAATGTTCTGATCCAGTAGCGACAGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: HISQSELASPGA*NKCSDPVATAL Trigger: CAGGGCTGTCGCTACTGGATCAGAACATTTGTTCCAAGCTCCAGGGCTGGCCAGTTCACTCTGGGAAATATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050785.14 ENSMUST00000192241.2 |
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| CDS CAA 90 bp | TCAATGCATTGGTCGGTGGGGACAGAGAAGATGATGTTGTCGTCCTaGAGGCCCAGAGACTTGGCAAAGCGGGTGAAACGTTCCTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: SMHWSVGTEKMMLSS*RPRDLAKRVKRSFS Trigger: ACTGAAGGAACGTTTCACCCGCTTTGCCAAGTCTCTGGGCCTCAAGGACGACAACATCATCTTCTCTGTCCCCACCGACCAATGCATTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050785.14 |
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| CDS TCA 72 bp | TCTGTACCTGAGGATACCTGTGCATATTTCCCAGAGTaGACTGGCCAGCCCTGGAGCTTGGAACAAATGTTC | + |
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Preference number: 6 (lower is better) Translates to: SVPEDTCAYFPE*TGQPWSLEQMF Trigger: GAACATTTGTTCCAAGCTCCAGGGCTGGCCAGTTCACTCTGGGAAATATGCACAGGTATCCTCAGGTACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050785.14 ENSMUST00000192241.2 |
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| CDS CAA 72 bp | CGGGTGAAACGTTCCTTCAGTTCAGGGGACAGCTCCTaGGTTCTTCCATACAGGGTAATTTTGAAGTATTGC | + |
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Preference number: 6 (lower is better) Translates to: RVKRSFSSGDSS*VLPYRVILKYC Trigger: GCAATACTTCAAAATTACCCTGTATGGAAGAACCAAGGAGCTGTCCCCTGAACTGAAGGAACGTTTCACCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050785.14 ENSMUST00000192241.2 |
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| CDS TCA 72 bp | CCAGGAAGCCATGAAGTAATTGCCAGTACATTCTGTTaGAATACTTGGCAAGATTTCTGTCCCTCTCTCCCC | + |
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Preference number: 6 (lower is better) Translates to: PGSHEVIASTFC*NTWQDFCPSLP Trigger: GGGGAGAGAGGGACAGAAATCTTGCCAAGTATTTCAACAGAATGTACTGGCAATTACTTCATGGCTTCCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192241.2 |
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| CDS TCA 72 bp | GCTACTAGGTCTGATGTGTGCAAGTCCAGGAAGCCATaGAGTAATTGCCAGTACATTCTGTTGAAATACTTG | + |
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Preference number: 6 (lower is better) Translates to: ATRSDVCKSRKP*SNCQYILLKYL Trigger: CAAGTATTTCAACAGAATGTACTGGCAATTACTTCATGGCTTCCTGGACTTGCACACATCAGACCTAGTAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192241.2 |
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