Pregenerated sensors for LCN12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026943Ensembl transcript IDs: ENSMUST00000028312.13, ENSMUST00000114245.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACTGGCAGGAACCTGTTCCTTCTGTCTGCCCCAGGCCCTaGCCCTCTGTTGTCCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: CVESRGRVRLYWQEPVPSVCPRP*PSVVPG Trigger: ACCAGGGACAACAGAGGGTCAGGGCCTGGGGCAGAC...AGAAGGAACAGGTTCCTGCCAGTAGAGCCTCACCCTGCCTCTGCTCTCAACACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS-3UTR TCA 90 bp | GGAGTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCGTCTGCCCCAGGCCCTaGCCCTCTGTTGTCCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GVIGSVFICVESRGRVRLVCPRP*PSVVPG Trigger: ACCAGGGACAACAGAGGGTCAGGGCCTGGGGCAGAC...GAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGACTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR TCA 90 bp | GGAGTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCGGATTTGGGGCAGGGTaGGTATCAGCCACAGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: GVIGSVFICVESRGRVRLGFGAG*VSATEP Trigger: GGGCTCTGTGGCTGATACTCACCCTGCCCCAAATCC...GAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGACTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR TCA 90 bp | ATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACTGGCCCGGTGCTCTCTCCTaGAGGTGTTGTCTGCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: IGSVFICVESRGRVRLYWPGALS*RCCLPD Trigger: GTCTGGCAGACAACACCTTCAGGAGAGAGCACCGGG...CCAGTAGAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS-3UTR GCA 90 bp | TGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACTGGCAGGAACCTGTTCCTTCTTTGCCCAGGCTTGGTTaGTGGGATCAGGGTATAGGA | + |
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Preference number: 4 (lower is better) Translates to: CVESRGRVRLYWQEPVPSLPRLG*WDQGIG Trigger: TCCTATACCCTGATCCCAGCAACCAAGCCTGGGCAA...AGAAGGAACAGGTTCCTGCCAGTAGAGCCTCACCCTGCCTCTGCTCTCAACACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS-3UTR CCA 90 bp | TGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACTGGCAGGAACCTGTTCCTTCTGCTTGCCCCGAGTCATaGAGTTGGTCACCTGAAACT | + |
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Preference number: 4 (lower is better) Translates to: CVESRGRVRLYWQEPVPSACPES*SWSPET Trigger: AGTTTCAGGTGACCAACTCCATGACTCGGGGCAAGC...AGAAGGAACAGGTTCCTGCCAGTAGAGCCTCACCCTGCCTCTGCTCTCAACACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS-3UTR TCA 90 bp | GGAGTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCCTCTGTTGTCCCTGGTaGATTGCCCAGGCTTGGTTG | + |
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Preference number: 4 (lower is better) Translates to: GVIGSVFICVESRGRVRLLCCPW*IAQAWL Trigger: CAACCAAGCCTGGGCAATTCACCAGGGACAACAGAG...GAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGACTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR TCA 90 bp | GTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACGACATGGCTGAGATCTaGCTCTCCAGGATTTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: VIGSVFICVESRGRVRLYDMAEI*LSRIWG Trigger: GCCCCAAATCCTGGAGAGTCAGATCTCAGCCATGTC...GTAGAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR TCA 90 bp | GGAGTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCGCCTTGAGACATGGCTaGGATCTGACTCTCCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: GVIGSVFICVESRGRVRLALRHG*DLTLQD Trigger: ATCCTGGAGAGTCAGATCTCAGCCATGTCTCAAGGC...GAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR CCA 90 bp | GGAGTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCGCTTGCCCCGAGTCATaGAGTTGGTCACCTGAAACT | + |
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Preference number: 4 (lower is better) Translates to: GVIGSVFICVESRGRVRLACPES*SWSPET Trigger: AGTTTCAGGTGACCAACTCCATGACTCGGGGCAAGC...GAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGACTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR CCA 90 bp | GGAGTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCACCCTTGTGATGTTCTaGCTGCTTGTCTGTCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: GVIGSVFICVESRGRVRLTLVMF*LLVCLR Trigger: CCTCAGACAGACAAGCAGCCAGAACATCACAAGGGT...GAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGACTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR GCA 90 bp | ATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACTGGTATAGGACCAAGTGTTaGAGTGCTTGCCCCGAGTCA | + |
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Preference number: 4 (lower is better) Translates to: IGSVFICVESRGRVRLYWYRTKC*SACPES Trigger: TGACTCGGGGCAAGCACTGCAACACTTGGTCCTATA...CCAGTAGAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS-3UTR CCA 90 bp | GTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACACCCTTGTGATGTTCTaGCTGCTTGTCTGTCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: VIGSVFICVESRGRVRLYTLVMF*LLVCLR Trigger: CCTCAGACAGACAAGCAGCCAGAACATCACAAGGGT...GTAGAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS-3UTR CCA 90 bp | GTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACTCCTTTGTGAGGTTTTaGGTCCTGGTCAGGCAGATG | + |
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Preference number: 4 (lower is better) Translates to: VIGSVFICVESRGRVRLYSFVRF*VLVRQM Trigger: CATCTGCCTGACCAGGACCCAAAACCTCACAAAGGA...GTAGAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS-3UTR TCA 90 bp | GGAGTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTGTAGTCTGTCTCTATaGCCTGTATATTCTCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: GVIGSVFICVESRGRVRLCSLSL*PVYSLC Trigger: ACAGAGAGAATATACAGGTCATAGAGACAGACTACA...GAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGACTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR TCA 90 bp | ATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACTGGTGTAGTCTGTCTCTATaGCCTGTATATTCTCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: IGSVFICVESRGRVRLYWCSLSL*PVYSLC Trigger: ACAGAGAGAATATACAGGTCATAGAGACAGACTACA...CCAGTAGAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS TCA 90 bp | GTCTGTCTCTATGACCTGTATATTCTCTCTGTCTGCCCCAGGCCCTaGCCCTCTGTTGTCCCTGGTGAATTGCCCAGGCTTGGTTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: VCLYDLYILSVCPRP*PSVVPGELPRLGCW Trigger: CCAGCAACCAAGCCTGGGCAATTCACCAGGGACAACAGAGGGTCAGGGCCTGGGGCAGACAGAGAGAATATACAGGTCATAGAGACAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS-3UTR CAA 90 bp | TGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACTGGCAGGAACCTGTTCCTTCTATTGCCCAGGCTTGGTaGCTGGGATCAGGGTATAGG | + |
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Preference number: 5 (lower is better) Translates to: CVESRGRVRLYWQEPVPSIAQAW*LGSGYR Trigger: CCTATACCCTGATCCCAGCAACCAAGCCTGGGCAAT...AGAAGGAACAGGTTCCTGCCAGTAGAGCCTCACCCTGCCTCTGCTCTCAACACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS-3UTR CAA 90 bp | GGAGTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCGTTGTCCCTGGTGAATaGCCCAGGCTTGGTTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: GVIGSVFICVESRGRVRLVVPGE*PRLGCW Trigger: CCAGCAACCAAGCCTGGGCAATTCACCAGGGACAAC...GAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGACTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR CAA 90 bp | TGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACTGGCAGGAACCTGTTCCTTCTGGTCACTTTGGAAGCTaGTCATCTGGGGAAAGCCTT | + |
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Preference number: 5 (lower is better) Translates to: CVESRGRVRLYWQEPVPSGHFGS*SSGESL Trigger: AAGGCTTTCCCCAGATGACAAGCTTCCAAAGTGACC...AGAAGGAACAGGTTCCTGCCAGTAGAGCCTCACCCTGCCTCTGCTCTCAACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR CAA 90 bp | GTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACGTTGTCCCTGGTGAATaGCCCAGGCTTGGTTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: VIGSVFICVESRGRVRLYVVPGE*PRLGCW Trigger: CCAGCAACCAAGCCTGGGCAATTCACCAGGGACAAC...GTAGAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS-3UTR CAA 90 bp | TGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACTGGCAGGAACCTGTTCCTTCTATCCTTTGTGAGGTTTaGGGTCCTGGTCAGGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: CVESRGRVRLYWQEPVPSILCEV*GPGQAD Trigger: ATCTGCCTGACCAGGACCCAAAACCTCACAAAGGAT...AGAAGGAACAGGTTCCTGCCAGTAGAGCCTCACCCTGCCTCTGCTCTCAACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS TCA 90 bp | GTCACTTTGGAAGCTTGTCATCTGGGGAAAGCCTTGAGACATGGCTaGGATCTGACTCTCCAGGATTTGGGGCAGGGTGAGTATCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: VTLEACHLGKALRHG*DLTLQDLGQGEYQP Trigger: TGGCTGATACTCACCCTGCCCCAAATCCTGGAGAGTCAGATCTCAGCCATGTCTCAAGGCTTTCCCCAGATGACAAGCTTCCAAAGTGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR CAA 90 bp | GTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACCTGAAACTGGTCACTTaGGAAGCTTGTCATCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: VIGSVFICVESRGRVRLYLKLVT*EACHLG Trigger: CCCCAGATGACAAGCTTCCAAAGTGACCAGTTTCAG...GTAGAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS-3UTR CAA 90 bp | GTCATAGGCAGTGTGTTTATTTGTGTTGAGAGCAGAGGCAGGGTGAGGCTCTACATCCTTTGTGAGGTTTaGGGTCCTGGTCAGGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: VIGSVFICVESRGRVRLYILCEV*GPGQAD Trigger: ATCTGCCTGACCAGGACCCAAAACCTCACAAAGGAT...GTAGAGCCTCACCCTGCCTCTGCTCTCAACACAAATAAACACACTGCCTATGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS TCA 72 bp | TGTCTGCCCCAGGCCCTGACCCTCTGTTGTCCCTGGTaGATTGCCCAGGCTTGGTTGCTGGGATCAGGGTAT | + |
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Preference number: 6 (lower is better) Translates to: CLPQALTLCCPW*IAQAWLLGSGY Trigger: ATACCCTGATCCCAGCAACCAAGCCTGGGCAATTCACCAGGGACAACAGAGGGTCAGGGCCTGGGGCAGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS GCA 72 bp | GCTTGGTTGCTGGGATCAGGGTATAGGACCAAGTGTTaGAGTGCTTGCCCCGAGTCATGGAGTTGGTCACCT | + |
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Preference number: 6 (lower is better) Translates to: AWLLGSGYRTKC*SACPESWSWSP Trigger: AGGTGACCAACTCCATGACTCGGGGCAAGCACTGCAACACTTGGTCCTATACCCTGATCCCAGCAACCAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS GCA 72 bp | CCCTCTGTTGTCCCTGGTGAATTGCCCAGGCTTGGTTaGTGGGATCAGGGTATAGGACCAAGTGTTGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: PSVVPGELPRLG*WDQGIGPSVAV Trigger: CACTGCAACACTTGGTCCTATACCCTGATCCCAGCAACCAAGCCTGGGCAATTCACCAGGGACAACAGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS CCA 72 bp | CAGTTTCTACCCAGAAGGCTGACCCTTGTGATGTTCTaGCTGCTTGTCTGTCTGAGGGACAGCACCAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: QFLPRRLTLVMF*LLVCLRDSTRA Trigger: TGCCCTGGTGCTGTCCCTCAGACAGACAAGCAGCCAGAACATCACAAGGGTCAGCCTTCTGGGTAGAAACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS TCA 72 bp | GAAGCTTGTCATCTGGGGAAAGCCTTGAGACATGGCTaGGATCTGACTCTCCAGGATTTGGGGCAGGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: EACHLGKALRHG*DLTLQDLGQGE Trigger: CTCACCCTGCCCCAAATCCTGGAGAGTCAGATCTCAGCCATGTCTCAAGGCTTTCCCCAGATGACAAGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS TCA 72 bp | GTGTTGTCTGCCAGACCGAGGACAAACCACTCTCCCTaGAACTGGTCACTTTGGAAGCTTGTCATCTGGGGA | + |
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Preference number: 6 (lower is better) Translates to: VLSARPRTNHSP*NWSLWKLVIWG Trigger: TCCCCAGATGACAAGCTTCCAAAGTGACCAGTTTCAGGGAGAGTGGTTTGTCCTCGGTCTGGCAGACAACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS CCA 72 bp | TTTGGAAGCTTGTCATCTGGGGAAAGCCTTGAGACATaGCTGAGATCTGACTCTCCAGGATTTGGGGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: FGSLSSGESLET*LRSDSPGFGAG Trigger: CCCTGCCCCAAATCCTGGAGAGTCAGATCTCAGCCATGTCTCAAGGCTTTCCCCAGATGACAAGCTTCCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS CCA 72 bp | TCTGTTGTCCCTGGTGAATTGCCCAGGCTTGGTTGCTaGGATCAGGGTATAGGACCAAGTGTTGCAGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: SVVPGELPRLGC*DQGIGPSVAVL Trigger: AAGCACTGCAACACTTGGTCCTATACCCTGATCCCAGCAACCAAGCCTGGGCAATTCACCAGGGACAACAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS CAA 90 bp | GACCGAGGACAAACCACTCTCCCTGAAACTGGTCACTTTGGAAGCTaGTCATCTGGGGAAAGCCTTGAGACATGGCTGAGATCTGACTCT | + |
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Preference number: 6 (lower is better) Translates to: DRGQTTLPETGHFGS*SSGESLETWLRSDS Trigger: AGAGTCAGATCTCAGCCATGTCTCAAGGCTTTCCCCAGATGACAAGCTTCCAAAGTGACCAGTTTCAGGGAGAGTGGTTTGTCCTCGGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS CAA 72 bp | CAAACCACTCTCCCTGAAACTGGTCACTTTGGAAGCTaGTCATCTGGGGAAAGCCTTGAGACATGGCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: QTTLPETGHFGS*SSGESLETWLR Trigger: TCTCAGCCATGTCTCAAGGCTTTCCCCAGATGACAAGCTTCCAAAGTGACCAGTTTCAGGGAGAGTGGTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028312.13 |
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| CDS CCA 72 bp | ACCAAGTGTTGCAGTGCTTGCCCCGAGTCATGGAGTTaGTCACCTGAAACTGACTTTTCTCTTTCAGCTCAA | + |
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Preference number: 6 (lower is better) Translates to: TKCCSACPESWS*SPETDFSLSAQ Trigger: TTGAGCTGAAAGAGAAAAGTCAGTTTCAGGTGACCAACTCCATGACTCGGGGCAAGCACTGCAACACTTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS CCA 72 bp | TATAGGACCAAGTGTTGCAGTGCTTGCCCCGAGTCATaGAGTTGGTCACCTGAAACTGACTTTTCTCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: YRTKCCSACPES*SWSPETDFSLS Trigger: TGAAAGAGAAAAGTCAGTTTCAGGTGACCAACTCCATGACTCGGGGCAAGCACTGCAACACTTGGTCCTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS CAA 90 bp | CCAGTCACTCAAATCAGGAAAGAGGAAGTTATCCTTTGTGAGGTTTaGGGTCCTGGTCAGGCAGATGAACTTGTCTATTGTCTTATGAGA | + |
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Preference number: 6 (lower is better) Translates to: PVTQIRKEEVILCEV*GPGQADELVYCLMR Trigger: TCTCATAAGACAATAGACAAGTTCATCTGCCTGACCAGGACCCAAAACCTCACAAAGGATAACTTCCTCTTTCCTGATTTGAGTGACTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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| CDS CAA 72 bp | CAAATCAGGAAAGAGGAAGTTATCCTTTGTGAGGTTTaGGGTCCTGGTCAGGCAGATGAACTTGTCTATTGT | + |
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Preference number: 6 (lower is better) Translates to: QIRKEEVILCEV*GPGQADELVYC Trigger: ACAATAGACAAGTTCATCTGCCTGACCAGGACCCAAAACCTCACAAAGGATAACTTCCTCTTTCCTGATTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028312.13 ENSMUST00000114245.2 |
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