Pregenerated sensors for LCN11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069080Ensembl transcript IDs: ENSMUST00000091278.6
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | AGTTTATTTACTACACGGAGAAGGGTGGGTCAGCGTTaGAAGGCAGAAGCTTCAAGAGATGTGGGTCATGGA | + |
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Preference number: 3 (lower is better) Translates to: SLFTTRRRVGQR*KAEASRDVGHG Trigger: TCCATGACCCACATCTCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGTAGTAAATAAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR CCA 90 bp | ACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTCAAGAGATGTGGGTGTTACCTGCTCAGGGTaGAAGTCCTGCAGGGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: TRRRVGQRWKAEASRDVGVTCSG*KSCRAQ Trigger: CTGGGCCCTGCAGGACTTCCACCCTGAGCAGGTAAC...ACCCACATCTCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR TCA 90 bp | TTACTACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTCAAGAGATGCAGTGGAAGCCAGCTTaGGGGTGTGCCAAGGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: LLHGEGWVSVGRQKLQEMQWKPA*GCAKVL Trigger: CAGGACCTTGGCACACCCTCAAGCTGGCTTCCACTG...CATCTCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGTAGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR TCA 90 bp | ACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTCAAGAGATGTGGGTTCCTGTGGAAGTAGGTaGCATTCAGGTTGCCATTGT | + |
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Preference number: 4 (lower is better) Translates to: TRRRVGQRWKAEASRDVGSCGSR*HSGCHC Trigger: ACAATGGCAACCTGAATGTCACCTACTTCCACAGGA...ACCCACATCTCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR CCA 90 bp | ACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTCAAGAGATGTGGGTACTCAATTACAATGGTaGTGCCCCCTTCACTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: TRRRVGQRWKAEASRDVGTQLQW*CPLHSG Trigger: ACCAGAGTGAAGGGGGCACCACCATTGTAATTGAGT...ACCCACATCTCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR TCA 90 bp | ACTGAGTTTATTTACTACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCGGACAATGTCAGTCATaGAGCACCGATAGGCACCTC | + |
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Preference number: 4 (lower is better) Translates to: TEFIYYTEKGGSALEGRSGQCQS*STDRHL Trigger: GAGGTGCCTATCGGTGCTTCATGACTGACATTGTCC...GCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGTAGTAAATAAACTCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR GCA 90 bp | AGTTTATTTACTACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTCACAAGGTCCTGTTACCTaGTCAGGGTGGAAGTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: SLFTTRRRVGQRWKAEASQGPVT*SGWKSC Trigger: GCAGGACTTCCACCCTGAGCAGGTAACAGGACCTTG...TGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGTAGTAAATAAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR GCA 90 bp | AGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTCAAGAGATGTGGGTCATGGACTGTGGACAGACTCCTaGCGTGGAACTCAATTACAA | + |
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Preference number: 4 (lower is better) Translates to: RRVGQRWKAEASRDVGHGLWTDS*RGTQLQ Trigger: TTGTAATTGAGTTCCACGGCAGGAGTCTGTCCACAG...TCCATGACCCACATCTCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR CCA 90 bp | GGTGGGTCAGCGTTGGAAGGCAGAAGCTTCAAGAGATGTGGGTCATGGAAATGTGACAGACTCCTGCCGTaGAACTCAATTACAATGGTG | + |
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Preference number: 4 (lower is better) Translates to: GGSALEGRSFKRCGSWKCDRLLP*NSITMV Trigger: CACCATTGTAATTGAGTTCCACGGCAGGAGTCTGTC...ACATTTCCATGACCCACATCTCTTGAAGCTTCTGCCTTCCAACGCTGACCCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| 3UTR CAA 72 bp | GAGTTTATTTACTACACGGAGAAGGGTGGGTCAGCGTaGGAAGGCAGAAGCTTCAAGAGATGTGGGTCATGG | + |
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Preference number: 4 (lower is better) Translates to: EFIYYTEKGGSA*EGRSFKRCGSW Trigger: CCATGACCCACATCTCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGTAGTAAATAAACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR GCA 90 bp | GAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTCAAGAGATGTGGGTCATGGAAAAGTCAGAGAGTTTCTaGCTTGGTACTCAAAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: EGWVSVGRQKLQEMWVMEKSESF*LGTQRC Trigger: ACACCTTTGAGTACCAAGGCAGAAACTCTCTGACTT...TTCCATGACCCACATCTCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR CCA 90 bp | TTATTTACTACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTCAAGAGTGCCCCCTTCACTCTaGTTTTCCAAGTCCATGATG | + |
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Preference number: 4 (lower is better) Translates to: LFTTRRRVGQRWKAEASRVPPSL*FSKSMM Trigger: CATCATGGACTTGGAAAACCAGAGTGAAGGGGGCAC...TCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGTAGTAAATAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR GCA 90 bp | CTGAGTTTATTTACTACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTGTGTCAGTCTTCTCTaGGATGTAGAATTCCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: LSLFTTRRRVGQRWKAEACVSLL*DVEFLH Trigger: GTGAAGGAATTCTACATCGCAGAGAAGACTGACACA...AGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGTAGTAAATAAACTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR CCA 90 bp | ATACTGAGTTTATTTACTACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGGAACTCAATTACAATaGTGGTGCCCCCTTCACTCT | + |
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Preference number: 4 (lower is better) Translates to: ILSLFTTRRRVGQRWKAEGTQLQ*WCPLHS Trigger: AGAGTGAAGGGGGCACCACCATTGTAATTGAGTTCC...TTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGTAGTAAATAAACTCAGTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR CCA 90 bp | TTATTTACTACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTCAAGAAGAGAGTTTCTGCCTTaGTACTCAAAGGTGTACTGT | + |
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Preference number: 4 (lower is better) Translates to: LFTTRRRVGQRWKAEASRREFLP*YSKVYC Trigger: ACAGTACACCTTTGAGTACCAAGGCAGAAACTCTCT...TCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGTAGTAAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR GCA 90 bp | TATTTACTACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTCAAGAGAAGTCCTCAGTAACATaGACAAAAGTCAGAGAGTTT | + |
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Preference number: 4 (lower is better) Translates to: YLLHGEGWVSVGRQKLQEKSSVT*TKVREF Trigger: AAACTCTCTGACTTTTGTGCATGTTACTGAGGACTT...CTCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGTAGTAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS GCA 90 bp | CGGTCAGTGGAAGCCAGCTTGAGGGTGTGCCAAGGTCCTGTTACCTaGTCAGGGTGGAAGTCCTGCAGGGCCCAGGTCAGGCCCAGCCCC | + |
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Preference number: 5 (lower is better) Translates to: RSVEASLRVCQGPVT*SGWKSCRAQVRPSP Trigger: GGGGCTGGGCCTGACCTGGGCCCTGCAGGACTTCCACCCTGAGCAGGTAACAGGACCTTGGCACACCCTCAAGCTGGCTTCCACTGACCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS CCA 90 bp | GAAGCCAGCTTGAGGGTGTGCCAAGGTCCTGTTACCTGCTCAGGGTaGAAGTCCTGCAGGGCCCAGGTCAGGCCCAGCCCCACACTCAGC | + |
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Preference number: 5 (lower is better) Translates to: EASLRVCQGPVTCSG*KSCRAQVRPSPTLS Trigger: GCTGAGTGTGGGGCTGGGCCTGACCTGGGCCCTGCAGGACTTCCACCCTGAGCAGGTAACAGGACCTTGGCACACCCTCAAGCTGGCTTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS GCA 90 bp | TTGAGGGTGTGCCAAGGTCCTGTTACCTGCTCAGGGTGGAAGTCCTaGAGGGCCCAGGTCAGGCCCAGCCCCACACTCAGCAGCAGTAGA | + |
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Preference number: 5 (lower is better) Translates to: LRVCQGPVTCSGWKS*RAQVRPSPTLSSSR Trigger: TCTACTGCTGCTGAGTGTGGGGCTGGGCCTGACCTGGGCCCTGCAGGACTTCCACCCTGAGCAGGTAACAGGACCTTGGCACACCCTCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS GCA 90 bp | CCTTCCTCAATGAGAGACCGGTCAGTGGAAGCCAGCTTGAGGGTGTaGCAAGGTCCTGTTACCTGCTCAGGGTGGAAGTCCTGCAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: PSSMRDRSVEASLRV*QGPVTCSGWKSCRA Trigger: GGCCCTGCAGGACTTCCACCCTGAGCAGGTAACAGGACCTTGGCACACCCTCAAGCTGGCTTCCACTGACCGGTCTCTCATTGAGGAAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS GCA 90 bp | GAACGAGATAGCGTTCCCATCCGAGCTCATCTGTGGACAGACTCCTaGCGTGGAACTCAATTACAATGGTGGTGCCCCCTTCACTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: ERDSVPIRAHLWTDS*RGTQLQWWCPLHSG Trigger: ACCAGAGTGAAGGGGGCACCACCATTGTAATTGAGTTCCACGGCAGGAGTCTGTCCACAGATGAGCTCGGATGGGAACGCTATCTCGTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS CCA 90 bp | CTCCTGCCGTGGAACTCAATTACAATGGTGGTGCCCCCTTCACTCTaGTTTTCCAAGTCCATGATGGCGAAGTCCTCAGTAACATGCACA | + |
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Preference number: 5 (lower is better) Translates to: LLPWNSITMVVPPSL*FSKSMMAKSSVTCT Trigger: TGTGCATGTTACTGAGGACTTCGCCATCATGGACTTGGAAAACCAGAGTGAAGGGGGCACCACCATTGTAATTGAGTTCCACGGCAGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS-3UTR CAA 90 bp | TACTACACGGAGAAGGGTGGGTCAGCGTTGGAAGGCAGAAGCTTCAAGAGATGTCAGAGAGTTTCTGCCTaGGTACTCAAAGGTGTACTG | + |
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Preference number: 5 (lower is better) Translates to: YYTEKGGSALEGRSFKRCQRVSA*VLKGVL Trigger: CAGTACACCTTTGAGTACCAAGGCAGAAACTCTCTG...ACATCTCTTGAAGCTTCTGCCTTCCAACGCTGACCCACCCTTCTCCGTGTAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS GCA 90 bp | GCCTTGGTACTCAAAGGTGTACTGTCCAGGTGTGTCAGTCTTCTCTaGGATGTAGAATTCCTTCACACACTTTCCATCTTTCCTGTGGAA | + |
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Preference number: 5 (lower is better) Translates to: ALVLKGVLSRCVSLL*DVEFLHTLSIFPVE Trigger: TTCCACAGGAAAGATGGAAAGTGTGTGAAGGAATTCTACATCGCAGAGAAGACTGACACACCTGGACAGTACACCTTTGAGTACCAAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS GCA 90 bp | TCACTCTGGTTTTCCAAGTCCATGATGGCGAAGTCCTCAGTAACATaGACAAAAGTCAGAGAGTTTCTGCCTTGGTACTCAAAGGTGTAC | + |
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Preference number: 5 (lower is better) Translates to: SLWFSKSMMAKSSVT*TKVREFLPWYSKVY Trigger: GTACACCTTTGAGTACCAAGGCAGAAACTCTCTGACTTTTGTGCATGTTACTGAGGACTTCGCCATCATGGACTTGGAAAACCAGAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS GCA 72 bp | GAAGCCAGCTTGAGGGTGTGCCAAGGTCCTGTTACCTaGTCAGGGTGGAAGTCCTGCAGGGCCCAGGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: EASLRVCQGPVT*SGWKSCRAQVR Trigger: CCTGACCTGGGCCCTGCAGGACTTCCACCCTGAGCAGGTAACAGGACCTTGGCACACCCTCAAGCTGGCTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS GCA 72 bp | ATGAGAGACCGGTCAGTGGAAGCCAGCTTGAGGGTGTaGCAAGGTCCTGTTACCTGCTCAGGGTGGAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: MRDRSVEASLRV*QGPVTCSGWKS Trigger: GGACTTCCACCCTGAGCAGGTAACAGGACCTTGGCACACCCTCAAGCTGGCTTCCACTGACCGGTCTCTCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS CAA 72 bp | CCTTCCTCAATGAGAGACCGGTCAGTGGAAGCCAGCTaGAGGGTGTGCCAAGGTCCTGTTACCTGCTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: PSSMRDRSVEAS*RVCQGPVTCSG Trigger: CCCTGAGCAGGTAACAGGACCTTGGCACACCCTCAAGCTGGCTTCCACTGACCGGTCTCTCATTGAGGAAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS CCA 72 bp | TCCCATCCGAGCTCATCTGTGGACAGACTCCTGCCGTaGAACTCAATTACAATGGTGGTGCCCCCTTCACTC | + |
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Preference number: 6 (lower is better) Translates to: SHPSSSVDRLLP*NSITMVVPPSL Trigger: GAGTGAAGGGGGCACCACCATTGTAATTGAGTTCCACGGCAGGAGTCTGTCCACAGATGAGCTCGGATGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS CCA 72 bp | CTGTGGACAGACTCCTGCCGTGGAACTCAATTACAATaGTGGTGCCCCCTTCACTCTGGTTTTCCAAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: LWTDSCRGTQLQ*WCPLHSGFPSP Trigger: TGGACTTGGAAAACCAGAGTGAAGGGGGCACCACCATTGTAATTGAGTTCCACGGCAGGAGTCTGTCCACAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS CCA 72 bp | TGTGAACGAGATAGCGTTCCCATCCGAGCTCATCTGTaGACAGACTCCTGCCGTGGAACTCAATTACAATGG | + |
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Preference number: 6 (lower is better) Translates to: CERDSVPIRAHL*TDSCRGTQLQW Trigger: CCATTGTAATTGAGTTCCACGGCAGGAGTCTGTCCACAGATGAGCTCGGATGGGAACGCTATCTCGTTCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS CCA 72 bp | TGGAACTCAATTACAATGGTGGTGCCCCCTTCACTCTaGTTTTCCAAGTCCATGATGGCGAAGTCCTCAGTA | + |
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Preference number: 6 (lower is better) Translates to: WNSITMVVPPSL*FSKSMMAKSSV Trigger: TACTGAGGACTTCGCCATCATGGACTTGGAAAACCAGAGTGAAGGGGGCACCACCATTGTAATTGAGTTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS TCA 72 bp | CCTTCACACACTTTCCATCTTTCCTGTGGAAGTAGGTaGCATTCAGGTTGCCATTGTCCAGGAGGACAATGT | + |
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Preference number: 6 (lower is better) Translates to: PSHTFHLSCGSR*HSGCHCPGGQC Trigger: ACATTGTCCTCCTGGACAATGGCAACCTGAATGTCACCTACTTCCACAGGAAAGATGGAAAGTGTGTGAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS CCA 72 bp | TCAGTAACATGCACAAAAGTCAGAGAGTTTCTGCCTTaGTACTCAAAGGTGTACTGTCCAGGTGTGTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: SVTCTKVREFLP*YSKVYCPGVSV Trigger: GACTGACACACCTGGACAGTACACCTTTGAGTACCAAGGCAGAAACTCTCTGACTTTTGTGCATGTTACTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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| CDS CAA 72 bp | CTCAGTAACATGCACAAAAGTCAGAGAGTTTCTGCCTaGGTACTCAAAGGTGTACTGTCCAGGTGTGTCAGT | + |
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Preference number: 6 (lower is better) Translates to: LSNMHKSQRVSA*VLKGVLSRCVS Trigger: ACTGACACACCTGGACAGTACACCTTTGAGTACCAAGGCAGAAACTCTCTGACTTTTGTGCATGTTACTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091278.6 |
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