Pregenerated sensors for LCN10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047356Ensembl transcript IDs: ENSMUST00000058912.3
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGGGATCGGAAGATGCAAAGGCAGCAACCACGGCTCAGGCTCTCTaGAGCCAGCCAGCCACTGAATGTCCAGGGTCTGGAGGACCTCTC | + |
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Preference number: 1 (lower is better) Translates to: LGSEDAKAATTAQAL*SQPATECPGSGGPL Trigger: GAGAGGTCCTCCAGACCCTGGACATTCAGTGGCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTTTGCATCTTCCGATCCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR TCA 90 bp | AAAGGCAGCAACCACGGCTCAGGCTCTCTGCAGCCAGCCAGCCACTaGATGTCCAGGGTCTGGAGGACCTCTCAAGCCAAAGGGCTAAGC | + |
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Preference number: 1 (lower is better) Translates to: KGSNHGSGSLQPASH*MSRVWRTSQAKGLS Trigger: GCTTAGCCCTTTGGCTTGAGAGGTCCTCCAGACCCTGGACATTCAGTGGCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR GCA 90 bp | AAAGCCATGAGCACAGCCCAGAGGAAGTTTTCTGGGATCGGAAGATaGAAAGGCAGCAACCACGGCTCAGGCTCTCTGCAGCCAGCCAGC | + |
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Preference number: 1 (lower is better) Translates to: KAMSTAQRKFSGIGR*KGSNHGSGSLQPAS Trigger: GCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTTTGCATCTTCCGATCCCAGAAAACTTCCTCTGGGCTGTGCTCATGGCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR GCA 90 bp | GAGAGGCTGTTGGATCCCCTTGAGCTGGAGTTACAGGCGATCGTTTaGCACACAATATGGGTGCTGGGGACTGAATTGAGTCCTCAACAA | + |
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Preference number: 1 (lower is better) Translates to: ERLLDPLELELQAIV*HTIWVLGTELSPQQ Trigger: TTGTTGAGGACTCAATTCAGTCCCCAGCACCCATATTGTGTGGCAAACGATCGCCTGTAACTCCAGCTCAAGGGGATCCAACAGCCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR CAA 90 bp | TGTGTGTGCAGTGGCCACAAAGGCCAGAGAGGCTGTTGGATCCCCTaGAGCTGGAGTTACAGGCGATCGTTTGCCACACAATATGGGTGC | + |
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Preference number: 2 (lower is better) Translates to: CVCSGHKGQRGCWIP*SWSYRRSFATQYGC Trigger: GCACCCATATTGTGTGGCAAACGATCGCCTGTAACTCCAGCTCAAGGGGATCCAACAGCCTCTCTGGCCTTTGTGGCCACTGCACACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR CAA 90 bp | AGGTTGTACATGTGTGTGCAGTGGCCACAAAGGCCAGAGAGGCTGTaGGATCCCCTTGAGCTGGAGTTACAGGCGATCGTTTGCCACACA | + |
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Preference number: 2 (lower is better) Translates to: RLYMCVQWPQRPERL*DPLELELQAIVCHT Trigger: TGTGTGGCAAACGATCGCCTGTAACTCCAGCTCAAGGGGATCCAACAGCCTCTCTGGCCTTTGTGGCCACTGCACACACATGTACAACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR-3UTR TCA 90 bp | TCTCTAACTACTAAGCCATCTCTAGGCCACAAAATAAAGAAAGCCCTTTTAAAATTGACCTCCCCAGGGTaGAGTGATGGTGAGACTCAG | + |
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Preference number: 2 (lower is better) Translates to: SLTTKPSLGHKIKKALLKLTSPG*SDGETQ Trigger: CTGAGTCTCACCATCACTTCACCCTGGGGAGGTCAA...TTTTAAAAGGGCTTTCTTTATTTTGTGGCCTAGAGATGGCTTAGTAGTTAGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR-3UTR GCA 90 bp | TCTCTAACTACTAAGCCATCTCTAGGCCACAAAATAAAGAAAGCCCTTTTAAAATCTGGGATCGGAAGATaGAAAGGCAGCAACCACGGC | + |
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Preference number: 2 (lower is better) Translates to: SLTTKPSLGHKIKKALLKSGIGR*KGSNHG Trigger: GCCGTGGTTGCTGCCTTTGCATCTTCCGATCCCAGA...TTTTAAAAGGGCTTTCTTTATTTTGTGGCCTAGAGATGGCTTAGTAGTTAGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR TCA 72 bp | CCCCAGGGTGAAGTGATGGTGAGACTCAGCCTCCAGTaGAGTCCGGGAACCTGCAGGGCAGGTAGACCGAAG | + |
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Preference number: 3 (lower is better) Translates to: PQGEVMVRLSLQ*SPGTCRAGRPK Trigger: CTTCGGTCTACCTGCCCTGCAGGTTCCCGGACTTCACTGGAGGCTGAGTCTCACCATCACTTCACCCTGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR GCA 72 bp | GAAGATGCAAAGGCAGCAACCACGGCTCAGGCTCTCTaGAGCCAGCCAGCCACTGAATGTCCAGGGTCTGGA | + |
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Preference number: 3 (lower is better) Translates to: EDAKAATTAQAL*SQPATECPGSG Trigger: TCCAGACCCTGGACATTCAGTGGCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTTTGCATCTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR TCA 72 bp | GGAACCTGCAGGGCAGGTAGACCGAAGAGAAAGCCATaGGCACAGCCCAGAGGAAGTTTTCTGGGATCGGAA | + |
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Preference number: 3 (lower is better) Translates to: GTCRAGRPKRKP*AQPRGSFLGSE Trigger: TTCCGATCCCAGAAAACTTCCTCTGGGCTGTGCTCATGGCTTTCTCTTCGGTCTACCTGCCCTGCAGGTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR TCA 72 bp | AGAGTGAGGCTGAAGTCAGTGTTGACCTCCCCAGGGTaGAGTGATGGTGAGACTCAGCCTCCAGTGAAGTCC | + |
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Preference number: 3 (lower is better) Translates to: RVRLKSVLTSPG*SDGETQPPVKS Trigger: GGACTTCACTGGAGGCTGAGTCTCACCATCACTTCACCCTGGGGAGGTCAACACTGACTTCAGCCTCACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR CCA 72 bp | TGTGTGTGCAGTGGCCACAAAGGCCAGAGAGGCTGTTaGATCCCCTTGAGCTGGAGTTACAGGCGATCGTTT | + |
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Preference number: 3 (lower is better) Translates to: CVCSGHKGQRGC*IPLSWSYRRSF Trigger: AAACGATCGCCTGTAACTCCAGCTCAAGGGGATCCAACAGCCTCTCTGGCCTTTGTGGCCACTGCACACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR CCA 72 bp | AGAGAAAGCCATGAGCACAGCCCAGAGGAAGTTTTCTaGGATCGGAAGATGCAAAGGCAGCAACCACGGCTC | + |
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Preference number: 3 (lower is better) Translates to: RESHEHSPEEVF*DRKMQRQQPRL Trigger: GAGCCGTGGTTGCTGCCTTTGCATCTTCCGATCCCAGAAAACTTCCTCTGGGCTGTGCTCATGGCTTTCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR GCA 72 bp | TTGGATCCCCTTGAGCTGGAGTTACAGGCGATCGTTTaGCACACAATATGGGTGCTGGGGACTGAATTGAGT | + |
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Preference number: 3 (lower is better) Translates to: LDPLELELQAIV*HTIWVLGTELS Trigger: ACTCAATTCAGTCCCCAGCACCCATATTGTGTGGCAAACGATCGCCTGTAACTCCAGCTCAAGGGGATCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR CCA 72 bp | GAGCTGGAGTTACAGGCGATCGTTTGCCACACAATATaGGTGCTGGGGACTGAATTGAGTCCTCAACAATAC | + |
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Preference number: 3 (lower is better) Translates to: ELELQAIVCHTI*VLGTELSPQQY Trigger: GTATTGTTGAGGACTCAATTCAGTCCCCAGCACCCATATTGTGTGGCAAACGATCGCCTGTAACTCCAGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR CCA 90 bp | ATGCAAAGGCAGCAACCACGGCTCAGGCTCTCTGCAGCCAGCCAGCCACTGAATTCAGAGTCACCTCCCTaGACTGGCAGCCCCGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: MQRQQPRLRLSAASQPLNSESPP*TGSPEA Trigger: GGCCTCGGGGCTGCCAGTCCAGGGAGGTGACTCTGA...ATTCAGTGGCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTTTGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR CCA 90 bp | GGAAGATGCAAAGGCAGCAACCACGGCTCAGGCTCTCTGCAGCCAGCCAGCCACATGACCACCCTGAGCTaGCCTGTTTTGTGCACCTTG | + |
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Preference number: 4 (lower is better) Translates to: GRCKGSNHGSGSLQPASHMTTLS*PVLCTL Trigger: CAAGGTGCACAAAACAGGCCAGCTCAGGGTGGTCAT...GTGGCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTTTGCATCTTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR CCA 90 bp | GGAAGATGCAAAGGCAGCAACCACGGCTCAGGCTCTCTGCAGCCAGCCAGCCACCCAGGGCTAGAGCTATaGATAGGGCCATCTCTAACT | + |
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Preference number: 4 (lower is better) Translates to: GRCKGSNHGSGSLQPASHPGLEL*IGPSLT Trigger: AGTTAGAGATGGCCCTATCCATAGCTCTAGCCCTGG...GTGGCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTTTGCATCTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR CCA 90 bp | GATGCAAAGGCAGCAACCACGGCTCAGGCTCTCTGCAGCCAGCCAGCCACTGAATCCGTGGACAGCACATaGAAGCCCTTTACTCCCTTG | + |
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Preference number: 4 (lower is better) Translates to: DAKAATTAQALCSQPATESVDST*KPFTPL Trigger: CAAGGGAGTAAAGGGCTTCCATGTGCTGTCCACGGA...TTCAGTGGCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTTTGCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR TCA 90 bp | AAGGCAGCAACCACGGCTCAGGCTCTCTGCAGCCAGCCAGCCACTGAATGTCCATGGTGGCCTGTTTGGTaGGCTGCAGAATATGACATG | + |
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Preference number: 4 (lower is better) Translates to: KAATTAQALCSQPATECPWWPVW*AAEYDM Trigger: CATGTCATATTCTGCAGCTCACCAAACAGGCCACCA...TGGACATTCAGTGGCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR CCA 90 bp | GCAGCCAGCCAGCCACTGAATGTCCAGGGTCTGGAGGACCTCTCAAGCCAAAGGCTCCAGTTGAGAGTCTaGGCCTCCTTAGGGAAAAAC | + |
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Preference number: 4 (lower is better) Translates to: AASQPLNVQGLEDLSSQRLQLRV*ASLGKN Trigger: GTTTTTCCCTAAGGAGGCCCAGACTCTCAACTGGAG...CCTTTGGCTTGAGAGGTCCTCCAGACCCTGGACATTCAGTGGCTGGCTGGCTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| 3UTR CAA 72 bp | ATGTGTGTGCAGTGGCCACAAAGGCCAGAGAGGCTGTaGGATCCCCTTGAGCTGGAGTTACAGGCGATCGTT | + |
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Preference number: 4 (lower is better) Translates to: MCVQWPQRPERL*DPLELELQAIV Trigger: AACGATCGCCTGTAACTCCAGCTCAAGGGGATCCAACAGCCTCTCTGGCCTTTGTGGCCACTGCACACACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR TCA 90 bp | CAAAGGCAGCAACCACGGCTCAGGCTCTCTGCAGCCAGCCAGCCACTGAATGTCAGATGTTCTGTCTGTTaGAAAGCAGCAGGCTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: QRQQPRLRLSAASQPLNVRCSVC*KAAGSC Trigger: ACAAGAGCCTGCTGCTTTTCAACAGACAGAACATCT...GACATTCAGTGGCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR GCA 90 bp | TTGTACATGTGTGTGCAGTGGCCACAAAGGCCAGAGAGGCTGTTGGATCCCCTTTTAGGGAAAAACTCCTaGGTCCAGGACACCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: LYMCVQWPQRPERLLDPLLGKNS*VQDTTA Trigger: GGCTGTGGTGTCCTGGACGCAGGAGTTTTTCCCTAA...AAGGGGATCCAACAGCCTCTCTGGCCTTTGTGGCCACTGCACACACATGTACAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR GCA 90 bp | ACCGAAGAGAAAGCCATGAGCACAGCCCAGAGGAAGTTTTCTGGGATCGGAAGACACCTTGACCACAGATaGCCCCAGCTTCCTCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: TEEKAMSTAQRKFSGIGRHLDHR*PQLPLV Trigger: GACAAGAGGAAGCTGGGGGCATCTGTGGTCAAGGTG...TCTTCCGATCCCAGAAAACTTCCTCTGGGCTGTGCTCATGGCTTTCTCTTCGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR TCA 90 bp | TGCAGCCAGCCAGCCACTGAATGTCCAGGGTCTGGAGGACCTCTCAAGCCAAAGGTGAGCTGCAGAATATaGCATGTGTCCAGAAATTCT | + |
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Preference number: 4 (lower is better) Translates to: CSQPATECPGSGGPLKPKVSCRI*HVSRNS Trigger: AGAATTTCTGGACACATGTCATATTCTGCAGCTCAC...CTTTGGCTTGAGAGGTCCTCCAGACCCTGGACATTCAGTGGCTGGCTGGCTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR CAA 90 bp | CAAAGGCAGCAACCACGGCTCAGGCTCTCTGCAGCCAGCCAGCCACTGAATGTCGCCCCCAGCTTCCTCTaGTCTCTAGCCGGTAGGAAC | + |
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Preference number: 5 (lower is better) Translates to: QRQQPRLRLSAASQPLNVAPSFL*SLAGRN Trigger: GTTCCTACCGGCTAGAGACAAGAGGAAGCTGGGGGC...GACATTCAGTGGCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR CAA 90 bp | CAAAGGCAGCAACCACGGCTCAGGCTCTCTGCAGCCAGCCAGCCACTGAATGTCGAGATGTTCTGTCTGTaGAAAAGCAGCAGGCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: QRQQPRLRLSAASQPLNVEMFCL*KSSRLL Trigger: CAAGAGCCTGCTGCTTTTCAACAGACAGAACATCTC...GACATTCAGTGGCTGGCTGGCTGCAGAGAGCCTGAGCCGTGGTTGCTGCCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS TCA 90 bp | GAACCCCTGGGTGTCTGTGGCGATGGCAATAATGTACCAGAAGCCTaGAAACTTGCTCCAGTTGAGAGTCTGGGCCTCCTTAGGGAAAAA | + |
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Preference number: 5 (lower is better) Translates to: EPLGVCGDGNNVPEA*KLAPVESLGLLREK Trigger: TTTTTCCCTAAGGAGGCCCAGACTCTCAACTGGAGCAAGTTTTCAGGCTTCTGGTACATTATTGCCATCGCCACAGACACCCAGGGGTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS TCA 90 bp | TATGTGCACAGGAATCGTCTTTCGGAAGGATGGTGGCCTGTTTGGTaGGCTGCAGAATATGACATGTGTCCAGAAATTCTCGCAGACTCA | + |
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Preference number: 5 (lower is better) Translates to: YVHRNRLSEGWWPVW*AAEYDMCPEILADS Trigger: TGAGTCTGCGAGAATTTCTGGACACATGTCATATTCTGCAGCTCACCAAACAGGCCACCATCCTTCCGAAAGACGATTCCTGTGCACATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS-3UTR CAA 90 bp | TCTCTAACTACTAAGCCATCTCTAGGCCACAAAATAAAGAAAGCCCTTTTAAAACAGAAGCCTGAAAACTaGCTCCAGTTGAGAGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: SLTTKPSLGHKIKKALLKQKPEN*LQLRVW Trigger: CCAGACTCTCAACTGGAGCAAGTTTTCAGGCTTCTG...TTTTAAAAGGGCTTTCTTTATTTTGTGGCCTAGAGATGGCTTAGTAGTTAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS CCA 72 bp | CCCCGAGGCCTGCTGAAGGCGATGACCACCCTGAGCTaGCCTGTTTTGTGCACCTTGACCACAGATGCCCCC | + |
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Preference number: 6 (lower is better) Translates to: PRGLLKAMTTLS*PVLCTLTTDAP Trigger: GGGGGCATCTGTGGTCAAGGTGCACAAAACAGGCCAGCTCAGGGTGGTCATCGCCTTCAGCAGGCCTCGGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS CCA 72 bp | CTCTTCCTGTCCTTCTTCAGAGTCACCTCCCTGGACTaGCAGCCCCGAGGCCTGCTGAAGGCGATGACCACC | + |
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Preference number: 6 (lower is better) Translates to: LFLSFFRVTSLD*QPRGLLKAMTT Trigger: GGTGGTCATCGCCTTCAGCAGGCCTCGGGGCTGCCAGTCCAGGGAGGTGACTCTGAAGAAGGACAGGAAGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS CAA 72 bp | CTGCTGAAGGCGATGACCACCCTGAGCTGGCCTGTTTaGTGCACCTTGACCACAGATGCCCCCAGCTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: LLKAMTTLSWPV*CTLTTDAPSFL Trigger: GAGGAAGCTGGGGGCATCTGTGGTCAAGGTGCACAAAACAGGCCAGCTCAGGGTGGTCATCGCCTTCAGCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS CAA 90 bp | CTGCTGAAGGCGATGACCACCCTGAGCTGGCCTGTTTTGTGCACCTaGACCACAGATGCCCCCAGCTTCCTCTTGTCTCTAGCCGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: LLKAMTTLSWPVLCT*TTDAPSFLLSLAGR Trigger: CCTACCGGCTAGAGACAAGAGGAAGCTGGGGGCATCTGTGGTCAAGGTGCACAAAACAGGCCAGCTCAGGGTGGTCATCGCCTTCAGCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS CAA 72 bp | GCGATGACCACCCTGAGCTGGCCTGTTTTGTGCACCTaGACCACAGATGCCCCCAGCTTCCTCTTGTCTCTA | + |
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Preference number: 6 (lower is better) Translates to: AMTTLSWPVLCT*TTDAPSFLLSL Trigger: TAGAGACAAGAGGAAGCTGGGGGCATCTGTGGTCAAGGTGCACAAAACAGGCCAGCTCAGGGTGGTCATCGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS CCA 72 bp | CCCAGCTTCCTCTTGTCTCTAGCCGGTAGGAACCCCTaGGTGTCTGTGGCGATGGCAATAATGTACCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: PSFLLSLAGRNP*VSVAMAIMYQK Trigger: CTTCTGGTACATTATTGCCATCGCCACAGACACCCAGGGGTTCCTACCGGCTAGAGACAAGAGGAAGCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS CCA 72 bp | TACCAGAAGCCTGAAAACTTGCTCCAGTTGAGAGTCTaGGCCTCCTTAGGGAAAAACTCCTGCGTCCAGGAC | + |
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Preference number: 6 (lower is better) Translates to: YQKPENLLQLRV*ASLGKNSCVQD Trigger: GTCCTGGACGCAGGAGTTTTTCCCTAAGGAGGCCCAGACTCTCAACTGGAGCAAGTTTTCAGGCTTCTGGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS CAA 90 bp | GTGGCGATGGCAATAATGTACCAGAAGCCTGAAAACTTGCTCCAGTaGAGAGTCTGGGCCTCCTTAGGGAAAAACTCCTGCGTCCAGGAC | + |
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Preference number: 6 (lower is better) Translates to: VAMAIMYQKPENLLQ*RVWASLGKNSCVQD Trigger: GTCCTGGACGCAGGAGTTTTTCCCTAAGGAGGCCCAGACTCTCAACTGGAGCAAGTTTTCAGGCTTCTGGTACATTATTGCCATCGCCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS CAA 90 bp | TGGGTGTCTGTGGCGATGGCAATAATGTACCAGAAGCCTGAAAACTaGCTCCAGTTGAGAGTCTGGGCCTCCTTAGGGAAAAACTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: WVSVAMAIMYQKPEN*LQLRVWASLGKNSC Trigger: GCAGGAGTTTTTCCCTAAGGAGGCCCAGACTCTCAACTGGAGCAAGTTTTCAGGCTTCTGGTACATTATTGCCATCGCCACAGACACCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS TCA 72 bp | GGTGTCTGTGGCGATGGCAATAATGTACCAGAAGCCTaGAAACTTGCTCCAGTTGAGAGTCTGGGCCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: GVCGDGNNVPEA*KLAPVESLGLL Trigger: AAGGAGGCCCAGACTCTCAACTGGAGCAAGTTTTCAGGCTTCTGGTACATTATTGCCATCGCCACAGACACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS CAA 72 bp | GTGGCGATGGCAATAATGTACCAGAAGCCTGAAAACTaGCTCCAGTTGAGAGTCTGGGCCTCCTTAGGGAAA | + |
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Preference number: 6 (lower is better) Translates to: VAMAIMYQKPEN*LQLRVWASLGK Trigger: TTTCCCTAAGGAGGCCCAGACTCTCAACTGGAGCAAGTTTTCAGGCTTCTGGTACATTATTGCCATCGCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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| CDS TCA 72 bp | AGGAATCGTCTTTCGGAAGGATGGTGGCCTGTTTGGTaGGCTGCAGAATATGACATGTGTCCAGAAATTCTC | + |
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Preference number: 6 (lower is better) Translates to: RNRLSEGWWPVW*AAEYDMCPEIL Trigger: GAGAATTTCTGGACACATGTCATATTCTGCAGCTCACCAAACAGGCCACCATCCTTCCGAAAGACGATTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058912.3 |
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