Pregenerated sensors for LCMT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030763Ensembl transcript IDs: ENSMUST00000033025.7, ENSMUST00000206574.2, ENSMUST00000206721.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GAGATTTATTTAAACAATGATACTGACAGGAACAGGATCTGGTGTGACCACCTTGCAGGACCAACAAAGTaGGGCTGCACATCTCTCAGG | + |
|
Preference number: 2 (lower is better) Translates to: EIYLNNDTDRNRIWCDHLAGPTK*GCTSLR Trigger: CCTGAGAGATGTGCAGCCTCACTTTGTTGGTCCTGC...AAGGTGGTCACACCAGATCCTGTTCCTGTCAGTATCATTGTTTAAATAAATCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| 3UTR TCA 72 bp | ACCACGGGTTCCGGATGTGCAGCAGGACCAACAAAGTaGGGCTGCACATCTCTCAGGAGGCCCTGGCACTCC | + |
|
Preference number: 3 (lower is better) Translates to: TTGSGCAAGPTK*GCTSLRRPWHS Trigger: GGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTCCTGCTGCACATCCGGAACCCGTGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| 3UTR CCA 72 bp | ATTTATTTAAACAATGATACTGACAGGAACAGGATCTaGTGTGACCACCTTTGTAACCACGGGTTCCGGATG | + |
|
Preference number: 3 (lower is better) Translates to: IYLNNDTDRNRI*CDHLCNHGFRM Trigger: CATCCGGAACCCGTGGTTACAAAGGTGGTCACACCAGATCCTGTTCCTGTCAGTATCATTGTTTAAATAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR TCA 90 bp | GGCACTCCCTTAGCTAGAGCCTTCACCTTCCACCCCAGCACGAGCCTTCAGCAGTCCCAGCCCCAAGGTTaGGAATTTGGCAATGGCATT | + |
|
Preference number: 4 (lower is better) Translates to: GTPLARAFTFHPSTSLQQSQPQG*EFGNGI Trigger: AATGCCATTGCCAAATTCTCAACCTTGGGGCTGGGA...CTGCTGAAGGCTCGTGCTGGGGTGGAAGGTGAAGGCTCTAGCTAAGGGAGTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR GCA 90 bp | GGCACTCCCTTAGCTAGAGCCTTCACCTTCCACCCCAGCACGAGCCTTCAGCAGTGGCTGTCTCAAAACTaGTGGCTGCCCATTTCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: GTPLARAFTFHPSTSLQQWLSQN*WLPISG Trigger: TCCTGAAATGGGCAGCCAGCAGTTTTGAGACAGCCA...CTGCTGAAGGCTCGTGCTGGGGTGGAAGGTGAAGGCTCTAGCTAAGGGAGTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR TCA 90 bp | CAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGAGCCGGAGGTTTTCAATCATaGTCTGCCCAAACCGGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: QSEAAHLSGGPGTPLARAGGFQS*SAQTGR Trigger: ACGACCGGTTTGGGCAGATCATGATTGAAAACCTCC...GGCTCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR TCA 90 bp | GACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTCTTCTGGGACTCCAGTaGTTTGCAGGTTTCCACTCC | + |
|
Preference number: 4 (lower is better) Translates to: DQQSEAAHLSGGPGTPLALLGLQ*FAGFHS Trigger: GGAGTGGAAACCTGCAAATCACTGGAGTCCCAGAAG...AGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR GCA 90 bp | CAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGAGCCTCACCGCAAACCTCTTaGAGAGAGAAGCATCTTCGC | + |
|
Preference number: 4 (lower is better) Translates to: QSEAAHLSGGPGTPLARASPQTS*REKHLR Trigger: GCGAAGATGCTTCTCTCTGCAAGAGGTTTGCGGTGA...GGCTCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR GCA 90 bp | GACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTCATGCCAGTAGCCAATaGTCACCGCAAACCTCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: DQQSEAAHLSGGPGTPLAHASSQ*SPQTSC Trigger: GCAAGAGGTTTGCGGTGAGCATTGGCTACTGGCATG...AGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR GCA 90 bp | GACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTCTCAAAACTGCTGGCTaGCCATTTCAGGAGGTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: DQQSEAAHLSGGPGTPLALKTAG*PFQEVG Trigger: GCCAACCTCCTGAAATGGGCAGCCAGCAGTTTTGAG...AGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR GCA 90 bp | CAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGAGCCTGGCTGTCTCAAAACTaGTGGCTGCCCATTTCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: QSEAAHLSGGPGTPLARAWLSQN*WLPISG Trigger: TCCTGAAATGGGCAGCCAGCAGTTTTGAGACAGCCA...GGCTCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR CCA 90 bp | CAGGACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAAGCAGCCGTTCCTTCTaGGACTCCAGTGATTTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: QDQQSEAAHLSGGPGTPLSSRSF*DSSDLQ Trigger: CTGCAAATCACTGGAGTCCCAGAAGGAACGGCTGCT...TAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR TCA 90 bp | GACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTTCCCAGCCCCAAGGTTaGGAATTTGGCAATGGCATT | + |
|
Preference number: 4 (lower is better) Translates to: DQQSEAAHLSGGPGTPLASQPQG*EFGNGI Trigger: AATGCCATTGCCAAATTCTCAACCTTGGGGCTGGGA...AGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR TCA 90 bp | CAGGACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTATTTCAGGAGGTTGGCTaGCTGCTCTGGAGTCATGTA | + |
|
Preference number: 4 (lower is better) Translates to: QDQQSEAAHLSGGPGTPLFQEVG*LLWSHV Trigger: TACATGACTCCAGAGCAGTCAGCCAACCTCCTGAAA...TAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR TCA 90 bp | GACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTGGAGGTTTTCAATCATaGTCTGCCCAAACCGGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: DQQSEAAHLSGGPGTPLAGGFQS*SAQTGR Trigger: ACGACCGGTTTGGGCAGATCATGATTGAAAACCTCC...AGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR GCA 90 bp | GACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTTCACCGCAAACCTCTTaGAGAGAGAAGCATCTTCGC | + |
|
Preference number: 4 (lower is better) Translates to: DQQSEAAHLSGGPGTPLASPQTS*REKHLR Trigger: GCGAAGATGCTTCTCTCTGCAAGAGGTTTGCGGTGA...AGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR GCA 90 bp | CAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGACATGCCAGTAGCCAATaGTCACCGCAAACCTCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: QQSEAAHLSGGPGTPLARHASSQ*SPQTSC Trigger: GCAAGAGGTTTGCGGTGAGCATTGGCTACTGGCATG...TCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR GCA 90 bp | CAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGACTCAAAACTGCTGGCTaGCCATTTCAGGAGGTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: QQSEAAHLSGGPGTPLARLKTAG*PFQEVG Trigger: GCCAACCTCCTGAAATGGGCAGCCAGCAGTTTTGAG...TCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR GCA 90 bp | CAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGAGCCTTTTCAATCATGATCTaGCCAAACCGGTCGTCCATG | + |
|
Preference number: 4 (lower is better) Translates to: QSEAAHLSGGPGTPLARAFSIMI*PNRSSM Trigger: CATGGACGACCGGTTTGGGCAGATCATGATTGAAAA...GGCTCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR GCA 90 bp | CAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGAGCCAATCCAGCATGTGATTaGCCATTTGAAGCGTGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: QSEAAHLSGGPGTPLARANPACD*PFEACP Trigger: AGGACACGCTTCAAATGGGCAATCACATGCTGGATT...GGCTCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206574.2 |
||
| CDS-3UTR GCA 90 bp | GACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAAGGTCTCGGAGATCTaGTCCAATGATGGCATATCT | + |
|
Preference number: 4 (lower is better) Translates to: DQQSEAAHLSGGPGTPLAKVSEI*SNDGIS Trigger: AGATATGCCATCATTGGAGCAGATCTCCGAGACCTT...AGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR CCA 90 bp | GGCACTCCCTTAGCTAGAGCCTTCACCTTCCACCCCAGCACGAGCCTTCAGCAGTTGAGAATTTGGCAATaGCATTCTGTCTTTCGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: GTPLARAFTFHPSTSLQQLRIWQ*HSVFRR Trigger: TCTCCGAAAGACAGAATGCCATTGCCAAATTCTCAA...CTGCTGAAGGCTCGTGCTGGGGTGGAAGGTGAAGGCTCTAGCTAAGGGAGTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR TCA 90 bp | CAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGAGCCGATGGCATATCTTTTTaGATCCAGCATGTGACTATC | + |
|
Preference number: 4 (lower is better) Translates to: QSEAAHLSGGPGTPLARADGISF*IQHVTI Trigger: GATAGTCACATGCTGGATTCAAAAAGATATGCCATC...GGCTCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033025.7 |
||
| CDS-3UTR GCA 90 bp | CAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGATTTTCAATCATGATCTaGCCAAACCGGTCGTCCATG | + |
|
Preference number: 4 (lower is better) Translates to: QQSEAAHLSGGPGTPLARFSIMI*PNRSSM Trigger: CATGGACGACCGGTTTGGGCAGATCATGATTGAAAA...TCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR TCA 90 bp | CAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGAGATGGCATATCTTTTTaGATCCAGCATGTGATTGCC | + |
|
Preference number: 4 (lower is better) Translates to: QQSEAAHLSGGPGTPLARDGISF*IQHVIA Trigger: GGCAATCACATGCTGGATTCAAAAAGATATGCCATC...TCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206574.2 |
||
| CDS-3UTR CCA 90 bp | CAGGACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTACCAAGGTTGAGAATTTaGCAATGGCATTCTGTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: QDQQSEAAHLSGGPGTPLPRLRI*QWHSVF Trigger: AAAGACAGAATGCCATTGCCAAATTCTCAACCTTGG...TAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR CCA 90 bp | GGCACTCCCTTAGCTAGAGCCTTCACCTTCCACCCCAGCACGAGCCTTCAGCAGAGTTATCAGGAGTGTTaGCAATTGTGTATTCATGTT | + |
|
Preference number: 4 (lower is better) Translates to: GTPLARAFTFHPSTSLQQSYQEC*QLCIHV Trigger: AACATGAATACACAATTGCCAACACTCCTGATAACT...CTGCTGAAGGCTCGTGCTGGGGTGGAAGGTGAAGGCTCTAGCTAAGGGAGTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR TCA 90 bp | GAGATTTATTTAAACAATGATACTGACAGGAACAGGATCTGGTGTGACCACCTTCTTCTGGGACTCCAGTaGTTTGCAGGTTTCCACTCC | + |
|
Preference number: 4 (lower is better) Translates to: EIYLNNDTDRNRIWCDHLLLGLQ*FAGFHS Trigger: GGAGTGGAAACCTGCAAATCACTGGAGTCCCAGAAG...AAGGTGGTCACACCAGATCCTGTTCCTGTCAGTATCATTGTTTAAATAAATCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR TCA 90 bp | GAGATTTATTTAAACAATGATACTGACAGGAACAGGATCTGGTGTGACCACCTTCCTGCTCATAGTTTATaGACATGGCTGTCTCAAAAC | + |
|
Preference number: 4 (lower is better) Translates to: EIYLNNDTDRNRIWCDHLPAHSL*TWLSQN Trigger: GTTTTGAGACAGCCATGTTCATAAACTATGAGCAGG...AAGGTGGTCACACCAGATCCTGTTCCTGTCAGTATCATTGTTTAAATAAATCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR CCA 90 bp | GAGATTTATTTAAACAATGATACTGACAGGAACAGGATCTGGTGTGACCACCTTCCAAGGTTGAGAATTTaGCAATGGCATTCTGTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: EIYLNNDTDRNRIWCDHLPRLRI*QWHSVF Trigger: AAAGACAGAATGCCATTGCCAAATTCTCAACCTTGG...AAGGTGGTCACACCAGATCCTGTTCCTGTCAGTATCATTGTTTAAATAAATCTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS GCA 90 bp | GTAGGTAGGACCCGCCAGACGGTCCCCAGTTCTCCTCCGCCCGCCTaGCGCGCCGCCACCGCCGCCGCCGCCATGAAGAAGCAATTCAAC | + |
|
Preference number: 5 (lower is better) Translates to: VGRTRQTVPSSPPPA*RAATAAAAMKKQFN Trigger: GTTGAATTGCTTCTTCATGGCGGCGGCGGCGGTGGCGGCGCGGCAGGCGGGCGGAGGAGAACTGGGGACCGTCTGGCGGGTCCTACCTAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206721.2 |
||
| CDS CCA 90 bp | ATCATGCCAGTAGCCAATGCTCACCGCAAACCTGTTCCACCTCTCTaGTTTCGGCCTCTTTCGGCTAGGCTCGGCCCAACTCGTGGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: IMPVANAHRKPVPPL*FRPLSARLGPTRGR Trigger: CCTACCACGAGTTGGGCCGAGCCTAGCCGAAAGAGGCCGAAACCAGAGAGGTGGAACAGGTTTGCGGTGAGCATTGGCTACTGGCATGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206721.2 |
||
| CDS-3UTR CAA 90 bp | GGCACTCCCTTAGCTAGAGCCTTCACCTTCCACCCCAGCACGAGCCTTCAGCAGCTCACCGCAAACCTCTaGCAGAGAGAAGCATCTTCG | + |
|
Preference number: 5 (lower is better) Translates to: GTPLARAFTFHPSTSLQQLTANL*QREASS Trigger: CGAAGATGCTTCTCTCTGCAAGAGGTTTGCGGTGAG...CTGCTGAAGGCTCGTGCTGGGGTGGAAGGTGAAGGCTCTAGCTAAGGGAGTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR CAA 90 bp | CAGGACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTACTCACCGCAAACCTCTaGCAGAGAGAAGCATCTTCG | + |
|
Preference number: 5 (lower is better) Translates to: QDQQSEAAHLSGGPGTPLLTANL*QREASS Trigger: CGAAGATGCTTCTCTCTGCAAGAGGTTTGCGGTGAG...TAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR CAA 90 bp | GGCACTCCCTTAGCTAGAGCCTTCACCTTCCACCCCAGCACGAGCCTTCAGCAGAAAAGCGGCTTGCTTTaGATGGTGAGCAGCTTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: GTPLARAFTFHPSTSLQQKSGLL*MVSSFL Trigger: AAGAAAGCTGCTCACCATCAAAAGCAAGCCGCTTTT...CTGCTGAAGGCTCGTGCTGGGGTGGAAGGTGAAGGCTCTAGCTAAGGGAGTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS GCA 90 bp | ACTGCCTTACAAGATGCTCGATGTACGGATCATGCCAGTAGCCAATaGTCACCGCAAACCTGTTCCACCTCTCTGGTTTCGGCCTCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: TALQDARCTDHASSQ*SPQTCSTSLVSASF Trigger: GAAAGAGGCCGAAACCAGAGAGGTGGAACAGGTTTGCGGTGAGCATTGGCTACTGGCATGATCCGTACATCGAGCATCTTGTAAGGCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206721.2 |
||
| CDS-3UTR CAA 90 bp | CAGGACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTACCCAAGGTTGAGAATTaGGCAATGGCATTCTGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: QDQQSEAAHLSGGPGTPLPKVEN*AMAFCL Trigger: AAGACAGAATGCCATTGCCAAATTCTCAACCTTGGG...TAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR CAA 90 bp | GGCACTCCCTTAGCTAGAGCCTTCACCTTCCACCCCAGCACGAGCCTTCAGCAGCAGTTATCAGGAGTGTaGGCAATTGTGTATTCATGT | + |
|
Preference number: 5 (lower is better) Translates to: GTPLARAFTFHPSTSLQQQLSGV*AIVYSC Trigger: ACATGAATACACAATTGCCAACACTCCTGATAACTG...CTGCTGAAGGCTCGTGCTGGGGTGGAAGGTGAAGGCTCTAGCTAAGGGAGTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR CAA 90 bp | CAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGACCCAAGGTTGAGAATTaGGCAATGGCATTCTGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: QQSEAAHLSGGPGTPLARPKVEN*AMAFCL Trigger: AAGACAGAATGCCATTGCCAAATTCTCAACCTTGGG...TCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR CAA 90 bp | CAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTAGAGCCCAGTTATCAGGAGTGTaGGCAATTGTGTATTCATGT | + |
|
Preference number: 5 (lower is better) Translates to: QSEAAHLSGGPGTPLARAQLSGV*AIVYSC Trigger: ACATGAATACACAATTGCCAACACTCCTGATAACTG...GGCTCTAGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS TCA 90 bp | CATGGCTGTCTCAAAACTGCTGGCTGCCCATTTCAGGAGGTTGGCTaGCTGCTCTGGAGTCATGTAAACCAGCACACATTCAGTTATCAG | + |
|
Preference number: 5 (lower is better) Translates to: HGCLKTAGCPFQEVG*LLWSHVNQHTFSYQ Trigger: CTGATAACTGAATGTGTGCTGGTTTACATGACTCCAGAGCAGTCAGCCAACCTCCTGAAATGGGCAGCCAGCAGTTTTGAGACAGCCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS-3UTR CAA 90 bp | GACCAACAAAGTGAGGCTGCACATCTCTCAGGAGGCCCTGGCACTCCCTTAGCTCAGGAGTGTTGGCAATaGTGTATTCATGTTACATTT | + |
|
Preference number: 5 (lower is better) Translates to: DQQSEAAHLSGGPGTPLAQECWQ*CIHVTF Trigger: AAATGTAACATGAATACACAATTGCCAACACTCCTG...AGCTAAGGGAGTGCCAGGGCCTCCTGAGAGATGTGCAGCCTCACTTTGTTGGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS TCA 90 bp | CTCAGAAAGGTCTCGGAGATCTGCTCCAATGATGGCATATCTTTTTaGATCCAGCATGTGATTGCCCATTTGAAGCGTGTCCTCTGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: LRKVSEICSNDGISF*IQHVIAHLKRVLWV Trigger: CACCCAGAGGACACGCTTCAAATGGGCAATCACATGCTGGATTCAAAAAGATATGCCATCATTGGAGCAGATCTCCGAGACCTTTCTGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206574.2 |
||
| CDS TCA 90 bp | CTCAGAAAGGTCTCGGAGATCTGCTCCAATGATGGCATATCTTTTTaGATCCAGCATGTGACTATCCATTTGAAGCGTGTCCTCTGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: LRKVSEICSNDGISF*IQHVTIHLKRVLWV Trigger: CACCCAGAGGACACGCTTCAAATGGATAGTCACATGCTGGATTCAAAAAGATATGCCATCATTGGAGCAGATCTCCGAGACCTTTCTGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033025.7 |
||
| CDS TCA 90 bp | TTAGTTTCTCTTCCAGCTCAGAAAGGTCTCGGAGATCTGCTCCAATaGTGGCATATCTTTTTGAATCCAGCATGTGATTGCCCATTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: LVSLPAQKGLGDLLQ*WHIFLNPACDCPFE Trigger: TTCAAATGGGCAATCACATGCTGGATTCAAAAAGATATGCCATCATTGGAGCAGATCTCCGAGACCTTTCTGAGCTGGAAGAGAAACTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206574.2 |
||
| CDS TCA 90 bp | TTAGTTTCTCTTCCAGCTCAGAAAGGTCTCGGAGATCTGCTCCAATaGTGGCATATCTTTTTGAATCCAGCATGTGACTATCCATTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: LVSLPAQKGLGDLLQ*WHIFLNPACDYPFE Trigger: TTCAAATGGATAGTCACATGCTGGATTCAAAAAGATATGCCATCATTGGAGCAGATCTCCGAGACCTTTCTGAGCTGGAAGAGAAACTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033025.7 |
||
| CDS-3UTR CAA 90 bp | GAGATTTATTTAAACAATGATACTGACAGGAACAGGATCTGGTGTGACCACCTTCAGGAGTGTTGGCAATaGTGTATTCATGTTACATTT | + |
|
Preference number: 5 (lower is better) Translates to: EIYLNNDTDRNRIWCDHLQECWQ*CIHVTF Trigger: AAATGTAACATGAATACACAATTGCCAACACTCCTG...AAGGTGGTCACACCAGATCCTGTTCCTGTCAGTATCATTGTTTAAATAAATCTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS GCA 72 bp | ACCCGCCAGACGGTCCCCAGTTCTCCTCCGCCCGCCTaGCGCGCCGCCACCGCCGCCGCCGCCATGAAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: TRQTVPSSPPPA*RAATAAAAMKK Trigger: CTTCTTCATGGCGGCGGCGGCGGTGGCGGCGCGGCAGGCGGGCGGAGGAGAACTGGGGACCGTCTGGCGGGT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206721.2 |
||
| CDS CCA 72 bp | GTAGCCAATGCTCACCGCAAACCTGTTCCACCTCTCTaGTTTCGGCCTCTTTCGGCTAGGCTCGGCCCAACT | + |
|
Preference number: 6 (lower is better) Translates to: VANAHRKPVPPL*FRPLSARLGPT Trigger: AGTTGGGCCGAGCCTAGCCGAAAGAGGCCGAAACCAGAGAGGTGGAACAGGTTTGCGGTGAGCATTGGCTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206721.2 |
||
| CDS CCA 72 bp | GCTGTCTCCCACCCATTCAACAGCAGCCGTTCCTTCTaGGACTCCAGTGATTTGCAGGTTTCCACTCCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: AVSHPFNSSRSF*DSSDLQVSTPA Trigger: GGCAGGAGTGGAAACCTGCAAATCACTGGAGTCCCAGAAGGAACGGCTGCTGTTGAATGGGTGGGAGACAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS GCA 72 bp | CAAGATGCTCGATGTACGGATCATGCCAGTAGCCAATaGTCACCGCAAACCTGTTCCACCTCTCTGGTTTCG | + |
|
Preference number: 6 (lower is better) Translates to: QDARCTDHASSQ*SPQTCSTSLVS Trigger: CGAAACCAGAGAGGTGGAACAGGTTTGCGGTGAGCATTGGCTACTGGCATGATCCGTACATCGAGCATCTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206721.2 |
||
| CDS GCA 72 bp | CAAGATGCTCGATGTACGGATCATGCCAGTAGCCAATaGTCACCGCAAACCTCTTGCAGAGAGAAGCATCTT | + |
|
Preference number: 6 (lower is better) Translates to: QDARCTDHASSQ*SPQTSCREKHL Trigger: AAGATGCTTCTCTCTGCAAGAGGTTTGCGGTGAGCATTGGCTACTGGCATGATCCGTACATCGAGCATCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS GCA 72 bp | CCTCTGTTAATTTCGGGGGCCTTCCTCTCTTTAGACTaGCTTACAAGATGCTCGATGTACGGATCATGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: PLLISGAFLSLD*LTRCSMYGSCQ Trigger: CTGGCATGATCCGTACATCGAGCATCTTGTAAGGCAGTCTAAAGAGAGGAAGGCCCCCGAAATTAACAGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 ENSMUST00000206721.2 |
||
| CDS TCA 72 bp | ATTTCCAGAAGGTGGTATCCATCCCAGCCCCAAGGTTaGGAATTTGGCAATGGCATTCTGTCTTTCGGAGAA | + |
|
Preference number: 6 (lower is better) Translates to: ISRRWYPSQPQG*EFGNGILSFGE Trigger: TTCTCCGAAAGACAGAATGCCATTGCCAAATTCTCAACCTTGGGGCTGGGATGGATACCACCTTCTGGAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS CAA 90 bp | GTGTCCTCTGGGTGTAACTCCATGATGGGTCTGAATAAAAGCGGCTaGCTTTTGATGGTGAGCAGCTTTCTTGTGACTATCATTGGAAAG | + |
|
Preference number: 6 (lower is better) Translates to: VSSGCNSMMGLNKSG*LLMVSSFLVTIIGK Trigger: CTTTCCAATGATAGTCACAAGAAAGCTGCTCACCATCAAAAGCAAGCCGCTTTTATTCAGACCCATCATGGAGTTACACCCAGAGGACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS CAA 90 bp | TCTGGGTGTAACTCCATGATGGGTCTGAATAAAAGCGGCTTGCTTTaGATGGTGAGCAGCTTTCTTGTGACTATCATTGGAAAGTCGACT | + |
|
Preference number: 6 (lower is better) Translates to: SGCNSMMGLNKSGLL*MVSSFLVTIIGKST Trigger: AGTCGACTTTCCAATGATAGTCACAAGAAAGCTGCTCACCATCAAAAGCAAGCCGCTTTTATTCAGACCCATCATGGAGTTACACCCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS TCA 72 bp | GTCTCGGAGATCTGCTCCAATGATGGCATATCTTTTTaGATCCAGCATGTGACTATCCATTTGAAGCGTGTC | + |
|
Preference number: 6 (lower is better) Translates to: VSEICSNDGISF*IQHVTIHLKRV Trigger: GACACGCTTCAAATGGATAGTCACATGCTGGATTCAAAAAGATATGCCATCATTGGAGCAGATCTCCGAGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033025.7 |
||
| CDS CAA 72 bp | AACTCCATGATGGGTCTGAATAAAAGCGGCTTGCTTTaGATGGTGAGCAGCTTTCTTGTGACTATCATTGGA | + |
|
Preference number: 6 (lower is better) Translates to: NSMMGLNKSGLL*MVSSFLVTIIG Trigger: TCCAATGATAGTCACAAGAAAGCTGCTCACCATCAAAAGCAAGCCGCTTTTATTCAGACCCATCATGGAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||
| CDS CCA 72 bp | GCTTTTGATGGTGAGCAGCTTTCTTGTGACTATCATTaGAAAGTCGACTTCAAAATATTTATTTGGGAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: AFDGEQLSCDYH*KVDFKIFIWEK Trigger: CTTCTCCCAAATAAATATTTTGAAGTCGACTTTCCAATGATAGTCACAAGAAAGCTGCTCACCATCAAAAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033025.7 ENSMUST00000206574.2 |
||