Pregenerated sensors for LCE6A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000086848Ensembl transcript IDs: ENSMUST00000138403.2, ENSMUST00000170676.3
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGAGGTGGAGGGCCTGGCCTTCCTGGTGAAATTCATGAGTTTATCTaGAAAGGTTGTTGTAGCTATTTACCCTCGTTTGTGCCCAGTTTC | + |
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Preference number: 1 (lower is better) Translates to: RGGGPGLPGEIHEFI*KGCCSYLPSFVPSF Trigger: GAAACTGGGCACAAACGAGGGTAAATAGCTACAACAACCTTTCCAGATAAACTCATGAATTTCACCAGGAAGGCCAGGCCCTCCACCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| 3UTR CCA 72 bp | GGGCCTGGCCTTCCTGGTGAAATTCATGAGTTTATCTaGAAAGGTTGTTGTAGCTATTTACCCTCGTTTGTG | + |
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Preference number: 3 (lower is better) Translates to: GPGLPGEIHEFI*KGCCSYLPSFV Trigger: CACAAACGAGGGTAAATAGCTACAACAACCTTTCCAGATAAACTCATGAATTTCACCAGGAAGGCCAGGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR CCA 90 bp | GAAACAAGAAATGTTTTTCTAGCCAAGAGAGGTGGAGGGCCTGGCCTTCCTGGTTGGCTGACAGTGTTCTaGAGCCTCAGCCTTTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: ETRNVFLAKRGGGPGLPGWLTVF*SLSLFE Trigger: CTCAAAAAGGCTGAGGCTCCAGAACACTGTCAGCCA...ACCAGGAAGGCCAGGCCCTCCACCTCTCTTGGCTAGAAAAACATTTCTTGTTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR TCA 90 bp | AGAAATGTTTTTCTAGCCAAGAGAGGTGGAGGGCCTGGCCTTCCTGGTGAAATTAGCATTTGGCAGCTCTaGAAGTTGTGGCTTCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: RNVFLAKRGGGPGLPGEISIWQL*KLWLLL Trigger: CAGCAGAAGCCACAACTTTCAGAGCTGCCAAATGCT...AATTTCACCAGGAAGGCCAGGCCCTCCACCTCTCTTGGCTAGAAAAACATTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR CCA 90 bp | AATGTTTTTCTAGCCAAGAGAGGTGGAGGGCCTGGCCTTCCTGGTGAAATTCATTGGCTGACAGTGTTCTaGAGCCTCAGCCTTTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: NVFLAKRGGGPGLPGEIHWLTVF*SLSLFE Trigger: CTCAAAAAGGCTGAGGCTCCAGAACACTGTCAGCCA...ATGAATTTCACCAGGAAGGCCAGGCCCTCCACCTCTCTTGGCTAGAAAAACATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR TCA 90 bp | CTGGCCTTCCTGGTGAAATTCATGAGTTTATCTGGAAAGGTTGTTGTAGCTATTGAGCCTCAGCCTTTTTaGGTAGGAAGAACAGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: LAFLVKFMSLSGKVVVAIEPQPF*VGRTAC Trigger: GCAGGCTGTTCTTCCTACTCAAAAAGGCTGAGGCTC...AATAGCTACAACAACCTTTCCAGATAAACTCATGAATTTCACCAGGAAGGCCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR TCA 90 bp | GGCCTTCCTGGTGAAATTCATGAGTTTATCTGGAAAGGTTGTTGTAGCTATTTAAGCATTTGGCAGCTCTaGAAGTTGTGGCTTCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: GLPGEIHEFIWKGCCSYLSIWQL*KLWLLL Trigger: CAGCAGAAGCCACAACTTTCAGAGCTGCCAAATGCT...TAAATAGCTACAACAACCTTTCCAGATAAACTCATGAATTTCACCAGGAAGGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR TCA 90 bp | TTCCTGGTGAAATTCATGAGTTTATCTGGAAAGGTTGTTGTAGCTATTTACCCTGGAAGAACAGCCTGCTaGACAAGAAGTCCCACAAGA | + |
|
Preference number: 4 (lower is better) Translates to: FLVKFMSLSGKVVVAIYPGRTAC*TRSPTR Trigger: TCTTGTGGGACTTCTTGTTCAGCAGGCTGTTCTTCC...AGGGTAAATAGCTACAACAACCTTTCCAGATAAACTCATGAATTTCACCAGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR TCA 90 bp | AAATTCATGAGTTTATCTGGAAAGGTTGTTGTAGCTATTTACCCTCGTTTGTGCGGAAGAACAGCCTGCTaGACAAGAAGTCCCACAAGA | + |
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Preference number: 4 (lower is better) Translates to: KFMSLSGKVVVAIYPRLCGRTAC*TRSPTR Trigger: TCTTGTGGGACTTCTTGTTCAGCAGGCTGTTCTTCC...GCACAAACGAGGGTAAATAGCTACAACAACCTTTCCAGATAAACTCATGAATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR CAA 90 bp | TTTCTAGCCAAGAGAGGTGGAGGGCCTGGCCTTCCTGGTGAAATTCATGAGTTTGGAGCCTCAGCCTTTTaGAGTAGGAAGAACAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: FLAKRGGGPGLPGEIHEFGASAF*SRKNSL Trigger: CAGGCTGTTCTTCCTACTCAAAAAGGCTGAGGCTCC...AAACTCATGAATTTCACCAGGAAGGCCAGGCCCTCCACCTCTCTTGGCTAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR CAA 90 bp | TTTCTAGCCAAGAGAGGTGGAGGGCCTGGCCTTCCTGGTGAAATTCATGAGTTTCCTAAGACAGCGAGGTaGTGGGTGATGAATTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: FLAKRGGGPGLPGEIHEFPKTAR*WVMNFL Trigger: AAGGAAATTCATCACCCACAACCTCGCTGTCTTAGG...AAACTCATGAATTTCACCAGGAAGGCCAGGCCCTCCACCTCTCTTGGCTAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR CAA 90 bp | AATGTTTTTCTAGCCAAGAGAGGTGGAGGGCCTGGCCTTCCTGGTGAAATTCATCCTAAGACAGCGAGGTaGTGGGTGATGAATTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: NVFLAKRGGGPGLPGEIHPKTAR*WVMNFL Trigger: AAGGAAATTCATCACCCACAACCTCGCTGTCTTAGG...ATGAATTTCACCAGGAAGGCCAGGCCCTCCACCTCTCTTGGCTAGAAAAACATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR CAA 90 bp | GAAACAAGAAATGTTTTTCTAGCCAAGAGAGGTGGAGGGCCTGGCCTTCCTGGTAATATATGGGAGCATTaGGCAGCTCTGAAAGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: ETRNVFLAKRGGGPGLPGNIWEH*AALKVV Trigger: CACAACTTTCAGAGCTGCCAAATGCTCCCATATATT...ACCAGGAAGGCCAGGCCCTCCACCTCTCTTGGCTAGAAAAACATTTCTTGTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR CAA 90 bp | GTGGAGGGCCTGGCCTTCCTGGTGAAATTCATGAGTTTATCTGGAAAGGTTGTTAAGTCCCACAAGAAGTaGAACAGGTACTCAAAGAGA | + |
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Preference number: 5 (lower is better) Translates to: VEGLAFLVKFMSLSGKVVKSHKK*NRYSKR Trigger: TCTCTTTGAGTACCTGTTCAACTTCTTGTGGGACTT...AACAACCTTTCCAGATAAACTCATGAATTTCACCAGGAAGGCCAGGCCCTCCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR CAA 90 bp | CTGGTGAAATTCATGAGTTTATCTGGAAAGGTTGTTGTAGCTATTTACCCTCGTAATATATGGGAGCATTaGGCAGCTCTGAAAGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: LVKFMSLSGKVVVAIYPRNIWEH*AALKVV Trigger: CACAACTTTCAGAGCTGCCAAATGCTCCCATATATT...ACGAGGGTAAATAGCTACAACAACCTTTCCAGATAAACTCATGAATTTCACCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS-3UTR CAA 90 bp | CTGGTGAAATTCATGAGTTTATCTGGAAAGGTTGTTGTAGCTATTTACCCTCGTAAGTCCCACAAGAAGTaGAACAGGTACTCAAAGAGA | + |
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Preference number: 5 (lower is better) Translates to: LVKFMSLSGKVVVAIYPRKSHKK*NRYSKR Trigger: TCTCTTTGAGTACCTGTTCAACTTCTTGTGGGACTT...ACGAGGGTAAATAGCTACAACAACCTTTCCAGATAAACTCATGAATTTCACCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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| CDS TCA 72 bp | GACAGCGAGGTTGTGGGTGATGAATTTCCTTATGGCTaGCAGTGTTCTGGAGCCTCAGCCTTTTTGAGTAGG | + |
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Preference number: 6 (lower is better) Translates to: DSEVVGDEFPYG*QCSGASAFLSR Trigger: CCTACTCAAAAAGGCTGAGGCTCCAGAACACTGTCAGCCATAAGGAAATTCATCACCCACAACCTCGCTGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000138403.2 ENSMUST00000170676.3 |
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