Pregenerated sensors for LCE3F (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068885

Ensembl transcript IDs: ENSMUST00000090863.5

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	AACATCTCAGCACTTAAAGAAGACAGAGAAACTGGGAAAGAGGACTaGACATTTGAGGTTTATAGACTCGTTTTTGATAGTGTTTCTTTC	+
Preference number: 1 (lower is better) Translates to: NISALKEDRETGKED*TFEVYRLVFDSVSF Trigger: GAAAGAAACACTATCAAAAACGAGTCTATAAACCTCAAATGTTCAGTCCTCTTTCCCAGTTTCTCTGTCTTCTTTAAGTGCTGAGATGTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090863.5
3UTR CAA 90 bp	CAGCACTTAAAGAAGACAGAGAAACTGGGAAAGAGGACTGAACATTaGAGGTTTATAGACTCGTTTTTGATAGTGTTTCTTTCCCAATTG	+
Preference number: 2 (lower is better) Translates to: QHLKKTEKLGKRTEH*RFIDSFLIVFLSQL Trigger: CAATTGGGAAAGAAACACTATCAAAAACGAGTCTATAAACCTCAAATGTTCAGTCCTCTTTCCCAGTTTCTCTGTCTTCTTTAAGTGCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090863.5
3UTR CCA 72 bp	GAGAACAGGAAGAGCCAGGAGAGATCTGAGCTCTCTTaGGAAACATCTCAGCACTTAAAGAAGACAGAGAAA	+
Preference number: 3 (lower is better) Translates to: ENRKSQERSELS*ETSQHLKKTEK Trigger: TTTCTCTGTCTTCTTTAAGTGCTGAGATGTTTCCCAAGAGAGCTCAGATCTCTCCTGGCTCTTCCTGTTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090863.5
CDS-3UTR TCA 90 bp	AGGACTGAACATTTGAGGTTTATAGACTCGTTTTTGATAGTGTTTCTTTCCCAAGCTGTGGCCACAGCCTaGGCCCCCAGACTGCTGACC	+
Preference number: 4 (lower is better) Translates to: RTEHLRFIDSFLIVFLSQAVATA*APRLLT Trigger: GGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGC...TTGGGAAAGAAACACTATCAAAAACGAGTCTATAAACCTCAAATGTTCAGTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000090863.5
CDS-3UTR CCA 90 bp	AGATCTGAGCTCTCTTGGGAAACATCTCAGCACTTAAAGAAGACAGAGAAACTGCTTTGGGGAGCACTTTaGGGAAGGGCACTTGGGAGG	+
Preference number: 4 (lower is better) Translates to: RSELSWETSQHLKKTEKLLWGAL*GRALGR Trigger: CCTCCCAAGTGCCCTTCCCCAAAGTGCTCCCCAAAG...CAGTTTCTCTGTCTTCTTTAAGTGCTGAGATGTTTCCCAAGAGAGCTCAGATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090863.5
CDS-3UTR CCA 90 bp	AGGACTGAACATTTGAGGTTTATAGACTCGTTTTTGATAGTGTTTCTTTCCCAAAGCCTCCCTCAGAGCTaGGGAGACTGCAGCCCCCAG	+
Preference number: 4 (lower is better) Translates to: RTEHLRFIDSFLIVFLSQSLPQS*GDCSPQ Trigger: CTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGAGGCT...TTGGGAAAGAAACACTATCAAAAACGAGTCTATAAACCTCAAATGTTCAGTCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000090863.5