Pregenerated sensors for LCE3D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043472Ensembl transcript IDs: ENSMUST00000059053.11
Found 2 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | ACAGGCAGAGAAGGTTCTCCAGGATCAGACAAAACAAGACTAGTTGGGCTTTTCTTCCTCCAGACTGCCTaGTCTCAGCATCATGTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: TGREGSPGSDKTRLVGLFFLQTA*SQHHVP Trigger: TGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAA...GAAAAGCCCAACTAGTCTTGTTTTGTCTGATCCTGGAGAACCTTCTCTGCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059053.11 |
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| CDS-3UTR CCA 90 bp | GACCCCTGGAATGCTGTTTCCTCCAGACTGCCTTGTCTCAGCATCATGTTCCAGAGCCTCCCTCAGAGCTaGGGACACTGCAGCCCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: DPWNAVSSRLPCLSIMFQSLPQS*GHCSPQ Trigger: CTGGGGGCTGCAGTGTCCCCAGCTCTGAGGGAGGCT...CTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAACAGCATTCCAGGGGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059053.11 |
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