Pregenerated sensors for LCE3C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045475Ensembl transcript IDs: ENSMUST00000055375.6
Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TGTGGTGGGGATAGAATCTTTATTCTAGTCAAAACCAAGGATGGGCACATGCATAGGGAACAAGGGCAGTaGGCATCAGACAGGCAGAGA | + |
|
Preference number: 2 (lower is better) Translates to: CGGDRIFILVKTKDGHMHREQGQ*ASDRQR Trigger: TCTCTGCCTGTCTGATGCTCACTGCCCTTGTTCCCT...ATGCATGTGCCCATCCTTGGTTTTGACTAGAATAAAGATTCTATCCCCACCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055375.6 |
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| 3UTR-3UTR CAA 90 bp | GGCAGAGAAGACTCTCCAGGATCAGATAAAACAAGACTAGCTGGGCTTTTCTTGTTCCTCCAGACTGTCTaGTCTCAGCATCATGCTCCA | + |
|
Preference number: 3 (lower is better) Translates to: GREDSPGSDKTRLAGLFLFLQTV*SQHHAP Trigger: TGGAGCATGATGCTGAGACAAGACAGTCTGGAGGAA...CAAGAAAAGCCCAGCTAGTCTTGTTTTATCTGATCCTGGAGAGTCTTCTCTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055375.6 |
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| CDS-3UTR CCA 90 bp | AGTCAAAACCAAGGATGGGCACATGCATTCCACAGGAAGGAAGGGAACAAGGGCCTTTGGGGAGCACTTTaGAGAGGGACACTTGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SQNQGWAHAFHRKEGNKGLWGAL*RGTLGR Trigger: CCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAG...GCCCTTGTTCCCTTCCTTCCTGTGGAATGCATGTGCCCATCCTTGGTTTTGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055375.6 |
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