Pregenerated sensors for LCE3B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042031

Ensembl transcript IDs: ENSMUST00000046234.5

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	AGGATGGGCACATGCATTCCACAGGAAGGGTGGGAACAAGGGCTGTaGACATCAGACAATCAGAGAAGGGTGTCCAGGATCAGACAAAAC	+
Preference number: 1 (lower is better) Translates to: RMGTCIPQEGWEQGL*TSDNQRRVSRIRQN Trigger: GTTTTGTCTGATCCTGGACACCCTTCTCTGATTGTCTGATGTTCACAGCCCTTGTTCCCACCCTTCCTGTGGAATGCATGTGCCCATCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046234.5
3UTR-3UTR CCA 90 bp	AAGGGTGGGAACAAGGGCTGTGAACATCAGACAATCAGAGAAGGGTGTCCAGGAGCTTTTCTTGACCCCTaGGATGTTGATTCCTCCAGA	+
Preference number: 2 (lower is better) Translates to: KGGNKGCEHQTIREGCPGAFLDP*DVDSSR Trigger: TCTGGAGGAATCAACATCCCAGGGGTCAAGAAAAGC...TCCTGGACACCCTTCTCTGATTGTCTGATGTTCACAGCCCTTGTTCCCACCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046234.5
3UTR TCA 72 bp	ACATGCATTCCACAGGAAGGGTGGGAACAAGGGCTGTaGACATCAGACAATCAGAGAAGGGTGTCCAGGATC	+
Preference number: 3 (lower is better) Translates to: TCIPQEGWEQGL*TSDNQRRVSRI Trigger: GATCCTGGACACCCTTCTCTGATTGTCTGATGTTCACAGCCCTTGTTCCCACCCTTCCTGTGGAATGCATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046234.5
CDS-3UTR GCA 90 bp	GGAAGGGTGGGAACAAGGGCTGTGAACATCAGACAATCAGAGAAGGGTGTCCAGTGCAGGCAGACACTGTaGTGTGCTCTTCCTGGGGCA	+
Preference number: 4 (lower is better) Translates to: GRVGTRAVNIRQSEKGVQCRQTL*CALPGA Trigger: TGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCA...CTGGACACCCTTCTCTGATTGTCTGATGTTCACAGCCCTTGTTCCCACCCTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046234.5
CDS-3UTR GCA 90 bp	GGAAGGGTGGGAACAAGGGCTGTGAACATCAGACAATCAGAGAAGGGTGTCCAGGCAGACACTGTGCTGTaGTCTTCCTGGGGCACTTTG	+
Preference number: 4 (lower is better) Translates to: GRVGTRAVNIRQSEKGVQADTVL*SSWGTL Trigger: CAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGC...CTGGACACCCTTCTCTGATTGTCTGATGTTCACAGCCCTTGTTCCCACCCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046234.5
CDS-3UTR CCA 90 bp	GGAACAAGGGCTGTGAACATCAGACAATCAGAGAAGGGTGTCCAGGATCAGACAGTGCTGTGCTCTTCCTaGGGCACTTTGGGGAGCACT	+
Preference number: 4 (lower is better) Translates to: GTRAVNIRQSEKGVQDQTVLCSS*GTLGST Trigger: AGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCAC...TGTCTGATCCTGGACACCCTTCTCTGATTGTCTGATGTTCACAGCCCTTGTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046234.5
3UTR CAA 72 bp	ACAAGACTAGCTGGGCTTTTCTTGACCCCTGGGATGTaGATTCCTCCAGACTGTCTTGTCTCCACATCATGC	+
Preference number: 4 (lower is better) Translates to: TRLAGLFLTPGM*IPPDCLVSTSC Trigger: GCATGATGTGGAGACAAGACAGTCTGGAGGAATCAACATCCCAGGGGTCAAGAAAAGCCCAGCTAGTCTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046234.5

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