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Pregenerated sensors for LCE3A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054325

Ensembl transcript IDs: ENSMUST00000067318.6

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTAGAAGAGCTCAAGAACACAGAGCCCAAGACAGATTCTGATATCTaGAGAAAGAACAAGCCAACATGGCACTACTGCTCAGTACTCCAA +
Preference number: 1 (lower is better)
Translates to: LEELKNTEPKTDSDI*RKNKPTWHYCSVLQ
Trigger: TTGGAGTACTGAGCAGTAGTGCCATGTTGGCTTGTTCTTTCTTCAGATATCAGAATCTGTCTTGGGCTCTGTGTTCTTGAGCTCTTCTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067318.6
3UTR TCA 90 bp AAATCCATTAGAAGAGCTCAAGAACACAGAGCCCAAGACAGATTCTaGTATCTGAAGAAAGAACAAGCCAACATGGCACTACTGCTCAGT +
Preference number: 1 (lower is better)
Translates to: KSIRRAQEHRAQDRF*YLKKEQANMALLLS
Trigger: ACTGAGCAGTAGTGCCATGTTGGCTTGTTCTTTCTTCAGATATCAGAATCTGTCTTGGGCTCTGTGTTCTTGAGCTCTTCTAATGGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067318.6
3UTR TCA 90 bp AAGAATTTTATTCATCTACATGGTTGGACACAGGTGATGGAACCATaGGAAGGAGAAGCAACCAGGCTTTTGGGAAATCCATTAGAAGAG +
Preference number: 1 (lower is better)
Translates to: KNFIHLHGWTQVMEP*EGEATRLLGNPLEE
Trigger: CTCTTCTAATGGATTTCCCAAAAGCCTGGTTGCTTCTCCTTCTCATGGTTCCATCACCTGTGTCCAACCATGTAGATGAATAAAATTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067318.6
3UTR-3UTR TCA 90 bp ACATGGTTGGACACAGGTGATGGAACCATGAGAAGGAGAAGCAACCAGGCTTTTGCCCAAGACAGATTCTaGTATCTGAAGAAAGAACAA +
Preference number: 2 (lower is better)
Translates to: TWLDTGDGTMRRRSNQAFAQDRF*YLKKEQ
Trigger: TTGTTCTTTCTTCAGATATCAGAATCTGTCTTGGGC...AAAAGCCTGGTTGCTTCTCCTTCTCATGGTTCCATCACCTGTGTCCAACCATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067318.6
3UTR-3UTR GCA 90 bp CTTTTGGGAAATCCATTAGAAGAGCTCAAGAACACAGAGCCCAAGACAGATTCTCCAACATGGCACTACTaGTCAGTACTCCAAACCCTT +
Preference number: 2 (lower is better)
Translates to: LLGNPLEELKNTEPKTDSPTWHY*SVLQTL
Trigger: AAGGGTTTGGAGTACTGAGCAGTAGTGCCATGTTGG...AGAATCTGTCTTGGGCTCTGTGTTCTTGAGCTCTTCTAATGGATTTCCCAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067318.6
3UTR-3UTR CCA 90 bp AGGCTTTTGGGAAATCCATTAGAAGAGCTCAAGAACACAGAGCCCAAGACAGATAAGAACAAGCCAACATaGCACTACTGCTCAGTACTC +
Preference number: 2 (lower is better)
Translates to: RLLGNPLEELKNTEPKTDKNKPT*HYCSVL
Trigger: GAGTACTGAGCAGTAGTGCCATGTTGGCTTGTTCTT...ATCTGTCTTGGGCTCTGTGTTCTTGAGCTCTTCTAATGGATTTCCCAAAAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067318.6
3UTR TCA 72 bp CTCAAGAACACAGAGCCCAAGACAGATTCTGATATCTaGAGAAAGAACAAGCCAACATGGCACTACTGCTCA +
Preference number: 3 (lower is better)
Translates to: LKNTEPKTDSDI*RKNKPTWHYCS
Trigger: TGAGCAGTAGTGCCATGTTGGCTTGTTCTTTCTTCAGATATCAGAATCTGTCTTGGGCTCTGTGTTCTTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067318.6
3UTR-3UTR CAA 90 bp AGAACACAGAGCCCAAGACAGATTCTGATATCTGAAGAAAGAACAAGCCAACATGTACTCCAAACCCTTTaGTCTCAAACTCAGGATGCA +
Preference number: 3 (lower is better)
Translates to: RTQSPRQILISEERTSQHVLQTL*SQTQDA
Trigger: TGCATCCTGAGTTTGAGACAAAAGGGTTTGGAGTAC...ATGTTGGCTTGTTCTTTCTTCAGATATCAGAATCTGTCTTGGGCTCTGTGTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067318.6
3UTR TCA 72 bp GAAAGAATTTTATTCATCTACATGGTTGGACACAGGTaGTGGAACCATGAGAAGGAGAAGCAACCAGGCTTT +
Preference number: 3 (lower is better)
Translates to: ERILFIYMVGHR*WNHEKEKQPGF
Trigger: AAAGCCTGGTTGCTTCTCCTTCTCATGGTTCCATCACCTGTGTCCAACCATGTAGATGAATAAAATTCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067318.6
CDS-3UTR TCA 90 bp AGCCCAAGACAGATTCTGATATCTGAAGAAAGAACAAGCCAACATGGCACTACTGCTGTGGCCACAGCCTaGACCCCCAGACTGCTGACC +
Preference number: 4 (lower is better)
Translates to: SPRQILISEERTSQHGTTAVATA*TPRLLT
Trigger: GGTCAGCAGTCTGGGGGTTCAGGCTGTGGCCACAGC...AGTAGTGCCATGTTGGCTTGTTCTTTCTTCAGATATCAGAATCTGTCTTGGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067318.6