Pregenerated sensors for LCE1M (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027912Ensembl transcript IDs: ENSMUST00000029520.9
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCCTAGGCTaGCAGGTCTTCAGTCAATGCTGCTTTCCATGTTCTTCGTGGCCA | + |
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Preference number: 2 (lower is better) Translates to: SKYFCGKTREEETLG*QVFSQCCFPCSSWP Trigger: TGGCCACGAAGAACATGGAAAGCAGCATTGACTGAAGACCTGCAAGCCTAGGGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| 3UTR-3UTR GCA 90 bp | CAAAGCCAATGCATCTCAGAGCTGGGACCTGAAGACCTCGTGGTAGATGAGCTTGTCTTCAGTCAATGCTaGTTTCCATGTTCTTCGTGG | + |
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Preference number: 2 (lower is better) Translates to: QSQCISELGPEDLVVDELVFSQC*FPCSSW Trigger: CCACGAAGAACATGGAAAGCAGCATTGACTGAAGAC...AAGCTCATCTACCACGAGGTCTTCAGGTCCCAGCTCTGAGATGCATTGGCTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| 3UTR-3UTR GCA 90 bp | CGTACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCCTACAGGTCTTCAGTCAATaGTGCTTTCCATGTTCTTCG | + |
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Preference number: 2 (lower is better) Translates to: RTESSKYFCGKTREEETLQVFSQ*CFPCSS Trigger: CGAAGAACATGGAAAGCAGCATTGACTGAAGACCTG...TAGGGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGTACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | GAAAACCAGAGAAGAGGAGACCCTAGGCTTGCAGGTCTTCAGTCAATGCTGCTTTGCCACAGCAACTGCTaGCACCGCTGCTGCCACCGC | + |
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Preference number: 4 (lower is better) Translates to: ENQRRGDPRLAGLQSMLLCHSNC*HRCCHR Trigger: GCGGTGGCAGCAGCGGTGGCAGCAGTTGCTGTGGCA...AAGCAGCATTGACTGAAGACCTGCAAGCCTAGGGTCTCCTCTTCTCTGGTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | GGACGTACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCTGCTGCCACAGCAACTaGTGCCACCGCTGCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: GRTESSKYFCGKTREEETCCHSN*CHRCCH Trigger: GTGGCAGCAGCGGTGGCAGCAGTTGCTGTGGCAGCA...GGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGTACGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | AAAACCAGAGAAGAGGAGACCCTAGGCTTGCAGGTCTTCAGTCAATGCTGCTTTCGCTGCTGCCACCGCTaGTGCCACAGCAACTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: KTREEETLGLQVFSQCCFRCCHR*CHSNCC Trigger: GCAGCAGTTGCTGTGGCAGCAGCGGTGGCAGCAGCG...AAAGCAGCATTGACTGAAGACCTGCAAGCCTAGGGTCTCCTCTTCTCTGGTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | ACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCCTAGGCTGCCACCGCTGCTGCTaGCACAGCAACTGCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: TESSKYFCGKTREEETLGCHRCC*HSNCCH Trigger: GTGGCAGCAGTTGCTGTGGCAGCAGCAGCGGTGGCA...GCCTAGGGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | GACGTACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCCTGCTGCCACCGCTACTaGCACCGCTACTGCCACCAC | + |
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Preference number: 4 (lower is better) Translates to: DVQRVLSTSAGKPEKRRPCCHRY*HRYCHH Trigger: GTGGTGGCAGTAGCGGTGGCAGTAGCGGTGGCAGCA...GGGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGTACGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | ACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCCTAGGCGGCTGTTGCTGCCACTaGTGCTGCCACCACTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: TESSKYFCGKTREEETLGGCCCH*CCHHCC Trigger: GCAGCAGTGGTGGCAGCAGCAGTGGCAGCAACAGCC...GCCTAGGGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | GGACGTACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCGGCACTTTGGGGTCTTaGATTTGGGAGGGGGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: GRTESSKYFCGKTREEETGTLGS*IWEGAG Trigger: GCCAGCCCCCTCCCAAATGCAAGACCCCAAAGTGCC...GGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGTACGTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | ACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCCTAGGCAACTGCTGCCACCGCTaGTGCTGCCACAGCAACTGC | + |
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Preference number: 4 (lower is better) Translates to: TESSKYFCGKTREEETLGNCCHR*CCHSNC Trigger: GCAGTTGCTGTGGCAGCAGCAGCGGTGGCAGCAGTT...GCCTAGGGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | GGACGTACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCCGCTACTGCCACCACTaGTGCTGCCACAGCAACTGC | + |
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Preference number: 4 (lower is better) Translates to: GRTESSKYFCGKTREEETRYCHH*CCHSNC Trigger: GCAGTTGCTGTGGCAGCAGCAGTGGTGGCAGTAGCG...GGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGTACGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | ACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCCTAGGCTACTGCCACCGCTACTaGCACCACTGCTGCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: TESSKYFCGKTREEETLGYCHRY*HHCCCH Trigger: GTGGCAGCAGCAGTGGTGGCAGTAGCGGTGGCAGTA...GCCTAGGGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | GGAGATGAAGAGGACGTACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGTACCACAGCAGCTGCTaGCACCGCTACTGCCACCGC | + |
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Preference number: 4 (lower is better) Translates to: GDEEDVQRVLSTSAGKPEYHSSC*HRYCHR Trigger: GCGGTGGCAGTAGCGGTGGCAGCAGCTGCTGTGGTA...CTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGTACGTCCTCTTCATCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | GAAGAGGACGTACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGTGCCACCACTGCTGCTaGCACAGCAACTGCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: EEDVQRVLSTSAGKPEKRCHHCC*HSNCCH Trigger: GTGGCAGCAGTTGCTGTGGCAGCAGCAGTGGTGGCA...CCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGTACGTCCTCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR GCA 90 bp | CGTACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCCTATGCCACAGCAACTGCTaGCACCGCTGCTACAGCATC | + |
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Preference number: 4 (lower is better) Translates to: RTESSKYFCGKTREEETLCHSNC*HRCYSI Trigger: GATGCTGTAGCAGCGGTGGCAGCAGTTGCTGTGGCA...TAGGGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGTACG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR CCA 90 bp | GGAGATGAAGAGGACGTACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGTTGGGGTCTTGCATTTaGGAGGGGGCTGGCACTGTT | + |
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Preference number: 4 (lower is better) Translates to: GDEEDVQRVLSTSAGKPELGSCI*EGAGTV Trigger: AACAGTGCCAGCCCCCTCCCAAATGCAAGACCCCAA...CTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGTACGTCCTCTTCATCTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR CCA 90 bp | GGAGATGAAGAGGACGTACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGGGTTGGAGGGCACTTTaGGGTCTTGCATTTGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: GDEEDVQRVLSTSAGKPEGWRAL*GLAFGR Trigger: CCTCCCAAATGCAAGACCCCAAAGTGCCCTCCAACC...CTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGTACGTCCTCTTCATCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| 3UTR CAA 72 bp | TTCTGCGGGAAAACCAGAGAAGAGGAGACCCTAGGCTaGCAGGTCTTCAGTCAATGCTGCTTTCCATGTTCT | + |
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Preference number: 4 (lower is better) Translates to: FCGKTREEETLG*QVFSQCCFPCS Trigger: AGAACATGGAAAGCAGCATTGACTGAAGACCTGCAAGCCTAGGGTCTCCTCTTCTCTGGTTTTCCCGCAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS GCA 90 bp | GATGGCTGTTGCTGCCACTGCTGCTGCCACCACTGCTGCCCCCACTaGTACCACAGCAGCTGCTGCCACCGCTACTGCCACCGCTACTGC | + |
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Preference number: 5 (lower is better) Translates to: DGCCCHCCCHHCCPH*YHSSCCHRYCHRYC Trigger: GCAGTAGCGGTGGCAGTAGCGGTGGCAGCAGCTGCTGTGGTAGCAGTGGGGGCAGCAGTGGTGGCAGCAGCAGTGGCAGCAACAGCCATC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR CAA 90 bp | GAAAACCAGAGAAGAGGAGACCCTAGGCTTGCAGGTCTTCAGTCAATGCTGCTTGGGCACTTTGGGGTCTaGCATTTGGGAGGGGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: ENQRRGDPRLAGLQSMLLGHFGV*HLGGGW Trigger: CCAGCCCCCTCCCAAATGCAAGACCCCAAAGTGCCC...AAGCAGCATTGACTGAAGACCTGCAAGCCTAGGGTCTCCTCTTCTCTGGTTTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR CAA 90 bp | ACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCCTAGGCTTTGGGGTCTTGCATTaGGGAGGGGGCTGGCACTGT | + |
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Preference number: 5 (lower is better) Translates to: TESSKYFCGKTREEETLGFGVLH*GGGWHC Trigger: ACAGTGCCAGCCCCCTCCCAAATGCAAGACCCCAAA...GCCTAGGGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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| CDS-3UTR CAA 90 bp | GGACGTACAGAGAGTTCTAAGTACTTCTGCGGGAAAACCAGAGAAGAGGAGACCAGGTTGGAGGGCACTTaGGGGTCTTGCATTTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: GRTESSKYFCGKTREEETRLEGT*GSCIWE Trigger: CTCCCAAATGCAAGACCCCAAAGTGCCCTCCAACCT...GGTCTCCTCTTCTCTGGTTTTCCCGCAGAAGTACTTAGAACTCTCTGTACGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029520.9 |
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