Pregenerated sensors for LCE1L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046676Ensembl transcript IDs: ENSMUST00000054426.5
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGAAGGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCACAGCAGCCACTGCTaGCACAGCAACCACTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RREGGIAGRNRSCEHGFFHSSHC*HSNHCC Trigger: GCAGCAGTGGTTGCTGTGGCAGCAGTGGCTGCTGTG...AAAGAAACCATGTTCACAGGACCTGTTCCTGCCTGCTATTCCTCCCTCCCTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054426.5 |
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| CDS-3UTR GCA 90 bp | GGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCAGCAACCACCAGAGCTaGAGCAGCCACCAGAGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GRNRSCEHGFFLYCLSEASNHQS*SSHQSC Trigger: GCAGCTCTGGTGGCTGCTGCAGCTCTGGTGGTTGCT...GGCTTCAGACAAGCAATAAAGAAAGAAACCATGTTCACAGGACCTGTTCCTGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054426.5 |
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| CDS-3UTR GCA 90 bp | AGAAGGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCACTGCTACCACCACTaGTACAGCATCCAGAGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: RREGGIAGRNRSCEHGFFHCYHH*YSIQSC Trigger: ACAGCTCTGGATGCTGTAGCAGTGGTGGTAGCAGTG...AAAGAAACCATGTTCACAGGACCTGTTCCTGCCTGCTATTCCTCCCTCCCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054426.5 |
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| CDS-3UTR GCA 90 bp | AGAAGGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTTGCCACAACAGTCACTaGTACCACCACTGCTACAGC | + |
|
Preference number: 4 (lower is better) Translates to: RREGGIAGRNRSCEHGFFCHNSH*YHHCYS Trigger: GCTGTAGCAGTGGTGGTAGCAGTGACTGTTGTGGCA...AAAGAAACCATGTTCACAGGACCTGTTCCTGCCTGCTATTCCTCCCTCCCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054426.5 |
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| CDS-3UTR GCA 90 bp | GGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCCAGCAGTCCCCAGACTaGTGGTTACCACCACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: GRNRSCEHGFFLYCLSEAQQSPD*WLPPQQ Trigger: CTGCTGTGGTGGTAACCAGCAGTCTGGGGACTGCTG...GGCTTCAGACAAGCAATAAAGAAAGAAACCATGTTCACAGGACCTGTTCCTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054426.5 |
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| CDS-3UTR CCA 90 bp | AGAAGGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTGGGCATTTAGGAGTCTaGCATTTGGGAGGGCACTTG | + |
|
Preference number: 4 (lower is better) Translates to: RREGGIAGRNRSCEHGFFGHLGV*HLGGHL Trigger: CAAGTGCCCTCCCAAATGCCAGACTCCTAAATGCCC...AAAGAAACCATGTTCACAGGACCTGTTCCTGCCTGCTATTCCTCCCTCCCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054426.5 |
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| CDS-3UTR GCA 90 bp | GGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCCACAGCAACCACTGCTaGCACAACAGTCACTGCTAC | + |
|
Preference number: 4 (lower is better) Translates to: GRNRSCEHGFFLYCLSEAHSNHC*HNSHCY Trigger: GTAGCAGTGACTGTTGTGGCAGCAGTGGTTGCTGTG...GGCTTCAGACAAGCAATAAAGAAAGAAACCATGTTCACAGGACCTGTTCCTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054426.5 |
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| CDS GCA 90 bp | TGCCACAGCAACCACTGCTGCCACAACAGTCACTGCTACCACCACTaGTACAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGT | + |
|
Preference number: 5 (lower is better) Translates to: CHSNHCCHNSHCYHH*YSIQSCVDGDEEIC Trigger: ACAGATCTCTTCGTCGCCATCGACACAGCTCTGGATGCTGTAGCAGTGGTGGTAGCAGTGACTGTTGTGGCAGCAGTGGTTGCTGTGGCA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054426.5 |
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| CDS-3UTR CAA 90 bp | GGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCGACACAGGAGGGCACTaGGGAGGGCACTTAGGGGGA | + |
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Preference number: 5 (lower is better) Translates to: GRNRSCEHGFFLYCLSEADTGGH*GGHLGG Trigger: TCCCCCTAAGTGCCCTCCCAAGTGCCCTCCTGTGTC...GGCTTCAGACAAGCAATAAAGAAAGAAACCATGTTCACAGGACCTGTTCCTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054426.5 |
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| CDS GCA 72 bp | AACCACTGCTGCCACAACAGTCACTGCTACCACCACTaGTACAGCATCCAGAGCTGTGTCGATGGCGACGAA | + |
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Preference number: 6 (lower is better) Translates to: NHCCHNSHCYHH*YSIQSCVDGDE Trigger: TTCGTCGCCATCGACACAGCTCTGGATGCTGTAGCAGTGGTGGTAGCAGTGACTGTTGTGGCAGCAGTGGTT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054426.5 |
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