Pregenerated sensors for LCE1K (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095870Ensembl transcript IDs: ENSMUST00000179917.2
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGGATCAGTGGGGAAGGCTTTATTACTCTGAAACACAGAAGGGGTAGCAACATGAACATGGCTTCCTCCTaGATGACTTGTCTAAAGTGT | + |
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Preference number: 2 (lower is better) Translates to: RISGEGFITLKHRRGSNMNMASS*MTCLKC Trigger: ACACTTTAGACAAGTCATTCAGGAGGAAGCCATGTT...CATGTTGCTACCCCTTCTGTGTTTCAGAGTAATAAAGCCTTCCCCACTGATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179917.2 |
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| 3UTR TCA 72 bp | CCACAGTTAGATTTCAGTATTGTAGTGACCTACGCTTaGAACAAAGGAGGAGCAGGACAGAACAGCAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: PQLDFSIVVTYA*NKGGAGQNSRQ Trigger: CTGCCTGCTGTTCTGTCCTGCTCCTCCTTTGTTTCAAGCGTAGGTCACTACAATACTGAAATCTAACTGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179917.2 |
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| 3UTR-3UTR CAA 90 bp | AAACACAGAAGGGGTAGCAACATGGGAACAAATTCTGAATCTCCACAGTTAGATTTCCTCCTGAATGACTaGTCTAAAGTGTTGGTTACT | + |
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Preference number: 3 (lower is better) Translates to: KHRRGSNMGTNSESPQLDFLLND*SKVLVT Trigger: AGTAACCAACACTTTAGACAAGTCATTCAGGAGGAA...ATCTAACTGTGGAGATTCAGAATTTGTTCCCATGTTGCTACCCCTTCTGTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179917.2 |
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| CDS-3UTR TCA 90 bp | TGTAGTGACCTACGCTTGAAACAAAGGAGGAGCAGGACAGAACAGCAGGCAGGGGGGGGCCTGGCACTTTaGAGGGCATTTGGGGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: CSDLRLKQRRSRTEQQAGGGLAL*RAFGGA Trigger: TGCACCCCCAAATGCCCTTCAAAGTGCCAGGCCCCC...CCCTGCCTGCTGTTCTGTCCTGCTCCTCCTTTGTTTCAAGCGTAGGTCACTACA 58% GC, longest homopolymer 8 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000179917.2 |
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| CDS-3UTR GCA 90 bp | TGTAGTGACCTACGCTTGAAACAAAGGAGGAGCAGGACAGAACAGCAGGCAGGGCACAGCAGCCACTGCTaGCACCACTGCTGCCACAGC | + |
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Preference number: 4 (lower is better) Translates to: CSDLRLKQRRSRTEQQAGHSSHC*HHCCHS Trigger: GCTGTGGCAGCAGTGGTGGCAGCAGTGGCTGCTGTG...CCCTGCCTGCTGTTCTGTCCTGCTCCTCCTTTGTTTCAAGCGTAGGTCACTACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179917.2 |
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| CDS-3UTR GCA 90 bp | AGGCAGGGGCAGTCTTCTGAACATGGCTTCCTCCTGAATGACTTGTCTAAAGTGCACTGCTGCCACCACTaGTGCCACAGCAGCCACTGC | + |
|
Preference number: 4 (lower is better) Translates to: RQGQSSEHGFLLNDLSKVHCCHH*CHSSHC Trigger: GCAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCAGTG...CACTTTAGACAAGTCATTCAGGAGGAAGCCATGTTCAGAAGACTGCCCCTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179917.2 |
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| CDS-3UTR GCA 90 bp | GGGCAGTCTTCTGAACATGGCTTCCTCCTGAATGACTTGTCTAAAGTGTTGGTTTGCTGCCACCACTGCTaGCACAGCAGCCACTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: GQSSEHGFLLNDLSKVLVCCHHC*HSSHCC Trigger: GCAGCAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCA...AACCAACACTTTAGACAAGTCATTCAGGAGGAAGCCATGTTCAGAAGACTGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179917.2 |
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| CDS-3UTR GCA 90 bp | AGTGGGGAAGGCTTTATTACTCTGAAACACAGAAGGGGTAGCAACATGGGAACACACAGCAGCCACTGCTaGCACCACTGCTACAGCATC | + |
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Preference number: 4 (lower is better) Translates to: SGEGFITLKHRRGSNMGTHSSHC*HHCYSI Trigger: GATGCTGTAGCAGTGGTGGCAGCAGTGGCTGCTGTG...TGTTCCCATGTTGCTACCCCTTCTGTGTTTCAGAGTAATAAAGCCTTCCCCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179917.2 |
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| CDS-3UTR CCA 90 bp | AGCAACATGGGAACAAATTCTGAATCTCCACAGTTAGATTTCAGTATTGTAGTGATTTGGGGGTGCACTTaGGAGGAGGTTGGCACTGCT | + |
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Preference number: 4 (lower is better) Translates to: SNMGTNSESPQLDFSIVVIWGCT*EEVGTA Trigger: AGCAGTGCCAACCTCCTCCCAAGTGCACCCCCAAAT...CACTACAATACTGAAATCTAACTGTGGAGATTCAGAATTTGTTCCCATGTTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179917.2 |
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| CDS-3UTR CAA 90 bp | AAACACAGAAGGGGTAGCAACATGGGAACAAATTCTGAATCTCCACAGTTAGATCATTTGGGGGTGCACTaGGGAGGAGGTTGGCACTGC | + |
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Preference number: 5 (lower is better) Translates to: KHRRGSNMGTNSESPQLDHLGVH*GGGWHC Trigger: GCAGTGCCAACCTCCTCCCAAGTGCACCCCCAAATG...ATCTAACTGTGGAGATTCAGAATTTGTTCCCATGTTGCTACCCCTTCTGTGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179917.2 |
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| CDS-3UTR CAA 90 bp | AACATGGGAACAAATTCTGAATCTCCACAGTTAGATTTCAGTATTGTAGTGACCTGGGGGCCTGGCACTTaGAAGGGCATTTGGGGGTGC | + |
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Preference number: 5 (lower is better) Translates to: NMGTNSESPQLDFSIVVTWGPGT*KGIWGC Trigger: GCACCCCCAAATGCCCTTCAAAGTGCCAGGCCCCCA...GGTCACTACAATACTGAAATCTAACTGTGGAGATTCAGAATTTGTTCCCATGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000179917.2 |
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