Pregenerated sensors for LCE1J (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068887

Ensembl transcript IDs: ENSMUST00000107304.3, ENSMUST00000186525.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	GAACATTTCCCAGGAGATTTCAGCACCTCAGTGGGCAGGGCAAGGAGGGAAGCACAGCACCCAGAGCTGTaGCGATGGCGATGGAGAGAT	+
Preference number: 4 (lower is better) Translates to: EHFPGDFSTSVGRARREAQHPEL*RWRWRD Trigger: ATCTCTCCATCGCCATCGTCACAGCTCTGGGTGCTG...TGCTTCCCTCCTTGCCCTGCCCACTGAGGTGCTGAAATCTCCTGGGAAATGTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186525.2
CDS-3UTR CCA 90 bp	GGGAAGCAGGAGGAGAGGACATCACGAAATGGAGAGTCTTCTGAACGTGTTCTCAGCAGCACCCAGAGCTaGAGCCACAACAGCCCCCAG	+
Preference number: 4 (lower is better) Translates to: GKQEERTSRNGESSERVLSSTQS*SHNSPQ Trigger: CTGGGGGCTGTTGTGGCTCCAGCTCTGGGTGCTGCT...GAGAACACGTTCAGAAGACTCTCCATTTCGTGATGTCCTCTCCTCCTGCTTCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186525.2
CDS-3UTR GCA 90 bp	GGACATCACGAAATGGAGAGTCTTCTGAACGTGTTCTCCTCCTGCACCATTTGTCACAGCAGCCACTGCTaGCACCACTGCTACAGCACC	+
Preference number: 4 (lower is better) Translates to: GHHEMESLLNVFSSCTICHSSHC*HHCYST Trigger: GGTGCTGTAGCAGTGGTGGCAGCAGTGGCTGCTGTG...ACAAATGGTGCAGGAGGAGAACACGTTCAGAAGACTCTCCATTTCGTGATGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186525.2
CDS-3UTR CCA 90 bp	GAGACTATAGAACATTTCCCAGGAGATTTCAGCACCTCAGTGGGCAGGGCAAGGCGATGGAGAGATCTGTaGTGTCTGTGGTGGCTCAGG	+
Preference number: 4 (lower is better) Translates to: ETIEHFPGDFSTSVGRARRWRDL*CLWWLR Trigger: CCTGAGCCACCACAGACACCACAGATCTCTCCATCG...CCTTGCCCTGCCCACTGAGGTGCTGAAATCTCCTGGGAAATGTTCTATAGTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186525.2
CDS-3UTR CCA 90 bp	AGTCTTCTGAACGTGTTCTCCTCCTGCACCATTTGTCTGAAGTCTTCCTCACCCATTTTGGAGGACACTTaGCAGGGGCTTGGCACTGCT	+
Preference number: 4 (lower is better) Translates to: SLLNVFSSCTICLKSSSPILEDT*QGLGTA Trigger: AGCAGTGCCAAGCCCCTGCCAAGTGTCCTCCAAAAT...GGGTGAGGAAGACTTCAGACAAATGGTGCAGGAGGAGAACACGTTCAGAAGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186525.2
CDS-3UTR CCA 90 bp	GGGAAGCAGGAGGAGAGGACATCACGAAATGGAGAGTCTTCTGAACGTGTTCTCCTTTGGAGGGCATTTTaGGGTCTGGCATTTTGGAGG	+
Preference number: 4 (lower is better) Translates to: GKQEERTSRNGESSERVLLWRAF*GLAFWR Trigger: CCTCCAAAATGCCAGACCCCAAAATGCCCTCCAAAG...GAGAACACGTTCAGAAGACTCTCCATTTCGTGATGTCCTCTCCTCCTGCTTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186525.2
CDS-3UTR CAA 90 bp	GAACATTTCCCAGGAGATTTCAGCACCTCAGTGGGCAGGGCAAGGAGGGAAGCAACTTTGGAGGGCATTTaGGGGTCTGGCATTTTGGAG	+
Preference number: 5 (lower is better) Translates to: EHFPGDFSTSVGRARREATLEGI*GSGILE Trigger: CTCCAAAATGCCAGACCCCAAAATGCCCTCCAAAGT...TGCTTCCCTCCTTGCCCTGCCCACTGAGGTGCTGAAATCTCCTGGGAAATGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186525.2
CDS-3UTR CAA 90 bp	GGACATCACGAAATGGAGAGTCTTCTGAACGTGTTCTCCTCCTGCACCATTTGTCATTTTGGAGGACACTaGGCAGGGGCTTGGCACTGC	+
Preference number: 5 (lower is better) Translates to: GHHEMESLLNVFSSCTICHFGGH*AGAWHC Trigger: GCAGTGCCAAGCCCCTGCCAAGTGTCCTCCAAAATG...ACAAATGGTGCAGGAGGAGAACACGTTCAGAAGACTCTCCATTTCGTGATGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186525.2
CDS TCA 72 bp	CCACTGCTGCCACCACTGCTACAGCACCCAGAGCTGTaGCGATGGCGATGGAGAGATCTGTGGTGTCTGTGG	+
Preference number: 6 (lower is better) Translates to: PLLPPLLQHPEL*RWRWRDLWCLW Trigger: CCACAGACACCACAGATCTCTCCATCGCCATCGTCACAGCTCTGGGTGCTGTAGCAGTGGTGGCAGCAGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107304.3 ENSMUST00000186525.2