Pregenerated sensors for LCE1I (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068888

Ensembl transcript IDs: ENSMUST00000090866.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR GCA 90 bp	ACATTTCCCAGGAGATTTCAGCAAATCAGAGGGCAGAACAAGGAGGGAAGCAGGAGCATGTGCTCCTCCTaGACTATTTGTCTGAAGTCT	+
Preference number: 2 (lower is better) Translates to: TFPRRFQQIRGQNKEGSRSMCSS*TICLKS Trigger: AGACTTCAGACAAATAGTGCAGGAGGAGCACATGCT...CCTGCTTCCCTCCTTGTTCTGCCCTCTGATTTGCTGAAATCTCCTGGGAAATGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
3UTR-3UTR CCA 90 bp	ATGCAGAACATTTCCCAGGAGATTTCAGCAAATCAGAGGGCAGAACAAGGAGGGAGGAGGAGAGGACATTaGGCAATGGAGAATCTTCTG	+
Preference number: 2 (lower is better) Translates to: MQNISQEISANQRAEQGGRRRGH*AMENLL Trigger: CAGAAGATTCTCCATTGCCCAATGTCCTCTCCTCCT...CCCTCCTTGTTCTGCCCTCTGATTTGCTGAAATCTCCTGGGAAATGTTCTGCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
3UTR-3UTR GCA 90 bp	GACAATGCAGAACATTTCCCAGGAGATTTCAGCAAATCAGAGGGCAGAACAAGGAATCTTCTGAGCATGTaGTCCTCCTGCACTATTTGT	+
Preference number: 2 (lower is better) Translates to: DNAEHFPGDFSKSEGRTRNLLSM*SSCTIC Trigger: ACAAATAGTGCAGGAGGAGCACATGCTCAGAAGATT...CCTTGTTCTGCCCTCTGATTTGCTGAAATCTCCTGGGAAATGTTCTGCATTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
3UTR GCA 72 bp	AGAGGACATTGGGCAATGGAGAATCTTCTGAGCATGTaGTCCTCCTGCACTATTTGTCTGAAGTCTTCCTCA	+
Preference number: 3 (lower is better) Translates to: RGHWAMENLLSM*SSCTICLKSSS Trigger: TGAGGAAGACTTCAGACAAATAGTGCAGGAGGAGCACATGCTCAGAAGATTCTCCATTGCCCAATGTCCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
CDS-3UTR GCA 90 bp	ACATTTCCCAGGAGATTTCAGCAAATCAGAGGGCAGAACAAGGAGGGAAGCAGGCACAGCAGCCACCACTaGCACCACTGCTGCCACAGC	+
Preference number: 4 (lower is better) Translates to: TFPRRFQQIRGQNKEGSRHSSHH*HHCCHS Trigger: GCTGTGGCAGCAGTGGTGGCAGTGGTGGCTGCTGTG...CCTGCTTCCCTCCTTGTTCTGCCCTCTGATTTGCTGAAATCTCCTGGGAAATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
CDS-3UTR GCA 90 bp	ACATTTCCCAGGAGATTTCAGCAAATCAGAGGGCAGAACAAGGAGGGAAGCAGGCACTGCCACCACTGCTaGCACAGCAGCCACTACTGC	+
Preference number: 4 (lower is better) Translates to: TFPRRFQQIRGQNKEGSRHCHHC*HSSHYC Trigger: GCAGTAGTGGCTGCTGTGGCAGCAGTGGTGGCAGTG...CCTGCTTCCCTCCTTGTTCTGCCCTCTGATTTGCTGAAATCTCCTGGGAAATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
CDS-3UTR GCA 90 bp	GGAGAATCTTCTGAGCATGTGCTCCTCCTGCACTATTTGTCTGAAGTCTTCCTCCAGCAGCCCCCAGACTaGTGGCTACTGCCACAGCAG	+
Preference number: 4 (lower is better) Translates to: GESSEHVLLLHYLSEVFLQQPPD*WLLPQQ Trigger: CTGCTGTGGCAGTAGCCAGCAGTCTGGGGGCTGCTG...GAGGAAGACTTCAGACAAATAGTGCAGGAGGAGCACATGCTCAGAAGATTCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
CDS-3UTR CCA 90 bp	AATCTTCTGAGCATGTGCTCCTCCTGCACTATTTGTCTGAAGTCTTCCTCACCCTTGGGGTCTGGCACTTaGGAGGGCACTTGGCTGGGG	+
Preference number: 4 (lower is better) Translates to: NLLSMCSSCTICLKSSSPLGSGT*EGTWLG Trigger: CCCCAGCCAAGTGCCCTCCCAAGTGCCAGACCCCAA...GGGTGAGGAAGACTTCAGACAAATAGTGCAGGAGGAGCACATGCTCAGAAGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
CDS-3UTR GCA 90 bp	TCTTCTGAGCATGTGCTCCTCCTGCACTATTTGTCTGAAGTCTTCCTCACCCAGTACTGCCACCACTACTaGCACAGCAGCCACTGCTGC	+
Preference number: 4 (lower is better) Translates to: SSEHVLLLHYLSEVFLTQYCHHY*HSSHCC Trigger: GCAGCAGTGGCTGCTGTGGCAGTAGTGGTGGCAGTA...CTGGGTGAGGAAGACTTCAGACAAATAGTGCAGGAGGAGCACATGCTCAGAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
CDS-3UTR GCA 90 bp	GAACATTTCCCAGGAGATTTCAGCAAATCAGAGGGCAGAACAAGGAGGGAAGCACAGACTGCTGGCTACTaGCACAGCAGCCACCACTGC	+
Preference number: 4 (lower is better) Translates to: EHFPGDFSKSEGRTRREAQTAGY*HSSHHC Trigger: GCAGTGGTGGCTGCTGTGGCAGTAGCCAGCAGTCTG...TGCTTCCCTCCTTGTTCTGCCCTCTGATTTGCTGAAATCTCCTGGGAAATGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
CDS-3UTR GCA 90 bp	TGCAGAACATTTCCCAGGAGATTTCAGCAAATCAGAGGGCAGAACAAGGAGGGACACAGCAGCCACTACTaGCACCACTACTGCCACAGC	+
Preference number: 4 (lower is better) Translates to: CRTFPRRFQQIRGQNKEGHSSHY*HHYCHS Trigger: GCTGTGGCAGTAGTGGTGGCAGTAGTGGCTGCTGTG...TCCCTCCTTGTTCTGCCCTCTGATTTGCTGAAATCTCCTGGGAAATGTTCTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
CDS-3UTR GCA 90 bp	ACAATGCAGAACATTTCCCAGGAGATTTCAGCAAATCAGAGGGCAGAACAAGGACACCACTGCCACCACTaGTGCCACAGCAGCCACTAC	+
Preference number: 4 (lower is better) Translates to: TMQNISQEISANQRAEQGHHCHH*CHSSHY Trigger: GTAGTGGCTGCTGTGGCAGCAGTGGTGGCAGTGGTG...TCCTTGTTCTGCCCTCTGATTTGCTGAAATCTCCTGGGAAATGTTCTGCATTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
CDS-3UTR CCA 90 bp	AGGACAATGCAGAACATTTCCCAGGAGATTTCAGCAAATCAGAGGGCAGAACAAACTTGGGAGGGCACTTaGCTGGGGCCTGACACTGCT	+
Preference number: 4 (lower is better) Translates to: RTMQNISQEISANQRAEQTWEGT*LGPDTA Trigger: AGCAGTGTCAGGCCCCAGCCAAGTGCCCTCCCAAGT...TTGTTCTGCCCTCTGATTTGCTGAAATCTCCTGGGAAATGTTCTGCATTGTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
CDS-3UTR CAA 90 bp	AATGCAGAACATTTCCCAGGAGATTTCAGCAAATCAGAGGGCAGAACAAGGAGGATTTTGGAGGGCACTTaGGGGTCTGGCACTTGGGAG	+
Preference number: 5 (lower is better) Translates to: NAEHFPGDFSKSEGRTRRILEGT*GSGTWE Trigger: CTCCCAAGTGCCAGACCCCAAAGTGCCCTCCAAAAT...CCTCCTTGTTCTGCCCTCTGATTTGCTGAAATCTCCTGGGAAATGTTCTGCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090866.2
CDS CCA 72 bp	CCACTGCTGCCACCACTGCTACAGCATCCAGAGCTGTaGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGG	+
Preference number: 6 (lower is better) Translates to: PLLPPLLQHPEL*RWRRRDLRGLW Trigger: CCACAGACCCCGCAGATCCCTCCGTCGCCATCGCCACAGCTCTGGATGCTGTAGCAGTGGTGGCAGCAGTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090866.2