Pregenerated sensors for LCE1H (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049593Ensembl transcript IDs: ENSMUST00000051521.5
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TCATTGTCATTTCATGAGGACAATGCAGAACATTTCCCAGGAGATTTCAGCAACAATCTTCTGAGCATGTaGTCCTCCTGCACCATTTGT | + |
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Preference number: 2 (lower is better) Translates to: SLSFHEDNAEHFPGDFSNNLLSM*SSCTIC Trigger: ACAAATGGTGCAGGAGGAGCACATGCTCAGAAGATT...GTTGCTGAAATCTCCTGGGAAATGTTCTGCATTGTCCTCATGAAATGACAATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| 3UTR-3UTR CAA 90 bp | GAACATTTCCCAGGAGATTTCAGCAACTCAGAGGGCAGAACAAGGAGGGAAGCACTCCTCCTGCACCATTaGTTTGAAGTCTTCCTCACC | + |
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Preference number: 3 (lower is better) Translates to: EHFPGDFSNSEGRTRREALLLHH*FEVFLT Trigger: GGTGAGGAAGACTTCAAACAAATGGTGCAGGAGGAG...TGCTTCCCTCCTTGTTCTGCCCTCTGAGTTGCTGAAATCTCCTGGGAAATGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| 3UTR GCA 72 bp | AGAGGACATCGGGCAATGGATAATCTTCTGAGCATGTaGTCCTCCTGCACCATTTGTTTGAAGTCTTCCTCA | + |
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Preference number: 3 (lower is better) Translates to: RGHRAMDNLLSM*SSCTICLKSSS Trigger: TGAGGAAGACTTCAAACAAATGGTGCAGGAGGAGCACATGCTCAGAAGATTATCCATTGCCCGATGTCCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| 3UTR-3UTR CAA 90 bp | AAATGGTCATTGTCATTTCATGAGGACAATGCAGAACATTTCCCAGGAGATTTCTCCTGCACCATTTGTTaGAAGTCTTCCTCACCCAGG | + |
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Preference number: 3 (lower is better) Translates to: KWSLSFHEDNAEHFPGDFSCTIC*KSSSPR Trigger: CCTGGGTGAGGAAGACTTCAAACAAATGGTGCAGGA...GAAATCTCCTGGGAAATGTTCTGCATTGTCCTCATGAAATGACAATGACCATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| 3UTR TCA 72 bp | TTTATAACAAAGGGTAAAATGGTCATTGTCATTTCATaGGGACAATGCAGAACATTTCCCAGGAGATTTCAG | + |
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Preference number: 3 (lower is better) Translates to: FITKGKMVIVIS*GQCRTFPRRFQ Trigger: CTGAAATCTCCTGGGAAATGTTCTGCATTGTCCTCATGAAATGACAATGACCATTTTACCCTTTGTTATAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS-3UTR GCA 90 bp | GAGGGAAGCAGGAGGAGAGGACATCGGGCAATGGATAATCTTCTGAGCATGTGCAGCCACTGCTGCCACTaGTGCCACAGCAGCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: EGSRRRGHRAMDNLLSMCSHCCH*CHSSRC Trigger: GCAGCGGCTGCTGTGGCAGCAGTGGCAGCAGTGGCT...GCACATGCTCAGAAGATTATCCATTGCCCGATGTCCTCTCCTCCTGCTTCCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS-3UTR GCA 90 bp | ATGCAGAACATTTCCCAGGAGATTTCAGCAACTCAGAGGGCAGAACAAGGAGGGCGCTGCTGCCACCACTaGTGCCACAGCAGCCACTGT | + |
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Preference number: 4 (lower is better) Translates to: MQNISQEISATQRAEQGGRCCHH*CHSSHC Trigger: ACAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCAGCG...CCCTCCTTGTTCTGCCCTCTGAGTTGCTGAAATCTCCTGGGAAATGTTCTGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS-3UTR GCA 90 bp | ATGCAGAACATTTCCCAGGAGATTTCAGCAACTCAGAGGGCAGAACAAGGAGGGTGCCACAGCAGCCACTaGTGCCACTGCTGCCACAGC | + |
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Preference number: 4 (lower is better) Translates to: MQNISQEISATQRAEQGGCHSSH*CHCCHS Trigger: GCTGTGGCAGCAGTGGCAGCAGTGGCTGCTGTGGCA...CCCTCCTTGTTCTGCCCTCTGAGTTGCTGAAATCTCCTGGGAAATGTTCTGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS-3UTR GCA 90 bp | AATGCAGAACATTTCCCAGGAGATTTCAGCAACTCAGAGGGCAGAACAAGGAGGTGCTGCCACCACTGCTaGCACAGCAGCCACTGTTGC | + |
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Preference number: 4 (lower is better) Translates to: NAEHFPGDFSNSEGRTRRCCHHC*HSSHCC Trigger: GCAACAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCA...CCTCCTTGTTCTGCCCTCTGAGTTGCTGAAATCTCCTGGGAAATGTTCTGCATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS-3UTR GCA 90 bp | GACAATGCAGAACATTTCCCAGGAGATTTCAGCAACTCAGAGGGCAGAACAAGGCACAGCAGCCACTGTTaGCACCACTGCTACAGCACC | + |
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Preference number: 4 (lower is better) Translates to: DNAEHFPGDFSNSEGRTRHSSHC*HHCYST Trigger: GGTGCTGTAGCAGTGGTGGCAACAGTGGCTGCTGTG...CCTTGTTCTGCCCTCTGAGTTGCTGAAATCTCCTGGGAAATGTTCTGCATTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS-3UTR GCA 90 bp | TGTCATTTCATGAGGACAATGCAGAACATTTCCCAGGAGATTTCAGCAACTCAGCACTGCTGCCACTGCTaGCACAGCAGCCGCTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: CHFMRTMQNISQEISATQHCCHC*HSSRCC Trigger: GCAGCAGCGGCTGCTGTGGCAGCAGTGGCAGCAGTG...CTGAGTTGCTGAAATCTCCTGGGAAATGTTCTGCATTGTCCTCATGAAATGACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS-3UTR CCA 90 bp | ACAATGCAGAACATTTCCCAGGAGATTTCAGCAACTCAGAGGGCAGAACAAGGACTGTGGGGTCTGTGGTaGCTCAGACAGCAGCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TMQNISQEISATQRAEQGLWGLW*LRQQPP Trigger: TGGAGGCTGCTGTCTGAGCCACCACAGACCCCACAG...TCCTTGTTCTGCCCTCTGAGTTGCTGAAATCTCCTGGGAAATGTTCTGCATTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS-3UTR CCA 90 bp | TCATTGTCATTTCATGAGGACAATGCAGAACATTTCCCAGGAGATTTCAGCAACGATCTGTGGGGTCTGTaGTGGCTCAGACAGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: SLSFHEDNAEHFPGDFSNDLWGL*WLRQQP Trigger: AGGCTGCTGTCTGAGCCACCACAGACCCCACAGATC...GTTGCTGAAATCTCCTGGGAAATGTTCTGCATTGTCCTCATGAAATGACAATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS GCA 90 bp | CACTGCTGCCACTGCTGCCACAGCAGCCGCTGCTGCCACCACTGCTaGCACAGCAGCCACTGTTGCCACCACTGCTACAGCACCCAGAGC | + |
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Preference number: 5 (lower is better) Translates to: HCCHCCHSSRCCHHC*HSSHCCHHCYSTQS Trigger: GCTCTGGGTGCTGTAGCAGTGGTGGCAACAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCAGCGGCTGCTGTGGCAGCAGTGGCAGCAGTG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS GCA 90 bp | AGCCACTGCTGCCACTGCTGCCACAGCAGCCGCTGCTGCCACCACTaGTGCCACAGCAGCCACTGTTGCCACCACTGCTACAGCACCCAG | + |
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Preference number: 5 (lower is better) Translates to: SHCCHCCHSSRCCHH*CHSSHCCHHCYSTQ Trigger: CTGGGTGCTGTAGCAGTGGTGGCAACAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCAGCGGCTGCTGTGGCAGCAGTGGCAGCAGTGGCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS GCA 90 bp | TGCCACAGCAGCCACTGCTGCCACTGCTGCCACAGCAGCCGCTGCTaGCACCACTGCTGCCACAGCAGCCACTGTTGCCACCACTGCTAC | + |
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Preference number: 5 (lower is better) Translates to: CHSSHCCHCCHSSRC*HHCCHSSHCCHHCY Trigger: GTAGCAGTGGTGGCAACAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCAGCGGCTGCTGTGGCAGCAGTGGCAGCAGTGGCTGCTGTGGCA 66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS GCA 90 bp | TACTGCCACAGCAGCCACTGCTGCCACTGCTGCCACAGCAGCCGCTaGTGCCACCACTGCTGCCACAGCAGCCACTGTTGCCACCACTGC | + |
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Preference number: 5 (lower is better) Translates to: YCHSSHCCHCCHSSR*CHHCCHSSHCCHHC Trigger: GCAGTGGTGGCAACAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCAGCGGCTGCTGTGGCAGCAGTGGCAGCAGTGGCTGCTGTGGCAGTA 66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS GCA 72 bp | CACCACTGCTGCCACAGCAGCCACTGTTGCCACCACTaGTACAGCACCCAGAGCTGTGACGATGGCGACGAA | + |
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Preference number: 6 (lower is better) Translates to: HHCCHSSHCCHH*YSTQSCDDGDE Trigger: TTCGTCGCCATCGTCACAGCTCTGGGTGCTGTAGCAGTGGTGGCAACAGTGGCTGCTGTGGCAGCAGTGGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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| CDS TCA 72 bp | CCACTGTTGCCACCACTGCTACAGCACCCAGAGCTGTaGCGATGGCGACGAAGAGATCTGTGGGGTCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: PLLPPLLQHPEL*RWRRRDLWGLW Trigger: CCACAGACCCCACAGATCTCTTCGTCGCCATCGTCACAGCTCTGGGTGCTGTAGCAGTGGTGGCAACAGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051521.5 |
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