Pregenerated sensors for LCE1G (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027919Ensembl transcript IDs: ENSMUST00000029527.6
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | AAAGAGGACAATTGCTCTGGGTGGCACAGTGTGTTTGAAGGAAAAGATAATACACTCCTCCTGTACCATTaGTCTGAAGTCTTCCTCATG | + |
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Preference number: 3 (lower is better) Translates to: KEDNCSGWHSVFEGKDNTLLLYH*SEVFLM Trigger: CATGAGGAAGACTTCAGACAAATGGTACAGGAGGAG...TGTATTATCTTTTCCTTCAAACACACTGTGCCACCCAGAGCAATTGTCCTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029527.6 |
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| CDS-3UTR CCA 90 bp | TCTTCTGAGCGTGTTCTCCTCCTGTACCATTTGTCTGAAGTCTTCCTCATGCAGTTGGGGTCTGACACTTaGGAGGGCACTTGGCAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: SSERVLLLYHLSEVFLMQLGSDT*EGTWQG Trigger: CCCCTGCCAAGTGCCCTCCCAAGTGTCAGACCCCAA...CTGCATGAGGAAGACTTCAGACAAATGGTACAGGAGGAGAACACGCTCAGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029527.6 |
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| CDS-3UTR CCA 90 bp | TCTTCTGAGCGTGTTCTCCTCCTGTACCATTTGTCTGAAGTCTTCCTCATGCAGTTTTGGAGGGCACTTTaGGGTCTGACACTTGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SSERVLLLYHLSEVFLMQFWRAL*GLTLGR Trigger: CCTCCCAAGTGTCAGACCCCAAAGTGCCCTCCAAAA...CTGCATGAGGAAGACTTCAGACAAATGGTACAGGAGGAGAACACGCTCAGAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029527.6 |
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| CDS-3UTR CCA 90 bp | CATCTAAAAGAGGACAATTGCTCTGGGTGGCACAGTGTGTTTGAAGGAAAAGATCAGTCCCCAGACTGCTaGCTACTGCCACAGCAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: HLKEDNCSGWHSVFEGKDQSPDC*LLPQQP Trigger: TGGCTGCTGTGGCAGTAGCCAGCAGTCTGGGGACTG...ATCTTTTCCTTCAAACACACTGTGCCACCCAGAGCAATTGTCCTCTTTTAGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029527.6 |
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| CDS-3UTR CAA 90 bp | GGACATCACCCAATGGAGAGTCTTCTGAGCGTGTTCTCCTCCTGTACCATTTGTATTTTGGAGGGCACTTaGGGGTCTGACACTTGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: GHHPMESLLSVFSSCTICILEGT*GSDTWE Trigger: CTCCCAAGTGTCAGACCCCAAAGTGCCCTCCAAAAT...ACAAATGGTACAGGAGGAGAACACGCTCAGAAGACTCTCCATTGGGTGATGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029527.6 |
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| CDS TCA 72 bp | CCACTGCTGCCACCACTGCTACAGCATCCAGAGCTGTaGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: PLLPPLLQHPEL*RWRRRDLRGLW Trigger: CCACAGACCCCGCAGATCTCTTCGTCGCCATCGTCACAGCTCTGGATGCTGTAGCAGTGGTGGCAGCAGTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029527.6 |
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