Pregenerated sensors for LCE1F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042124Ensembl transcript IDs: ENSMUST00000047153.4
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | TTCTTAACAAATATGCAAAGGGACATTGTTATCACCTaGACAGAATGCAGAACATTTCACAGGAGATTTCAG | + |
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Preference number: 3 (lower is better) Translates to: FLTNMQRDIVIT*TECRTFHRRFQ Trigger: CTGAAATCTCCTGTGAAATGTTCTGCATTCTGTTCAGGTGATAACAATGTCCCTTTGCATATTTGTTAAGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR GCA 90 bp | GGCATTGGGGAGTCTTCGGAGCATGTGCTCCTCCTGCACCATTTGTCCGAAGTCTGCCACAACAGCCACTaGTGCCACCACTGCTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: GIGESSEHVLLLHHLSEVCHNSH*CHHCFH Trigger: GTGGAAGCAGTGGTGGCAGCAGTGGCTGTTGTGGCA...GACTTCGGACAAATGGTGCAGGAGGAGCACATGCTCCGAAGACTCCCCAATGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR GCA 90 bp | GAGAATCAGGCATTGGGGAGTCTTCGGAGCATGTGCTCCTCCTGCACCATTTGTCTCCACCCCCTGAGCTaGAGCATCCTCCAGAGCTAC | + |
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Preference number: 4 (lower is better) Translates to: ENQALGSLRSMCSSCTICLHPLS*SILQSY Trigger: GTAGCTCTGGAGGATGCTGCAGCTCAGGGGGTGGAG...ACAAATGGTGCAGGAGGAGCACATGCTCCGAAGACTCCCCAATGCCTGATTCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR GCA 90 bp | AGAATCAGGCATTGGGGAGTCTTCGGAGCATGTGCTCCTCCTGCACCATTTGTCCACTGCTGCCACCACTaGTTCCACAGCAGCCACTGC | + |
|
Preference number: 4 (lower is better) Translates to: RIRHWGVFGACAPPAPFVHCCHH*FHSSHC Trigger: GCAGTGGCTGCTGTGGAAGCAGTGGTGGCAGCAGTG...GACAAATGGTGCAGGAGGAGCACATGCTCCGAAGACTCCCCAATGCCTGATTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR GCA 90 bp | ATCAGGCATTGGGGAGTCTTCGGAGCATGTGCTCCTCCTGCACCATTTGTCCGACACAGCAGCCACTGCTaGCACCACTGCTACAACATC | + |
|
Preference number: 4 (lower is better) Translates to: IRHWGVFGACAPPAPFVRHSSHC*HHCYNI Trigger: GATGTTGTAGCAGTGGTGGCAGCAGTGGCTGCTGTG...TCGGACAAATGGTGCAGGAGGAGCACATGCTCCGAAGACTCCCCAATGCCTGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR CCA 90 bp | ATCAGGCATTGGGGAGTCTTCGGAGCATGTGCTCCTCCTGCACCATTTGTCCGACAATCCCCAGACTGCTaGCTACTGCCACAACAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: IRHWGVFGACAPPAPFVRQSPDC*LLPQQP Trigger: TGGCTGTTGTGGCAGTAGCCAGCAGTCTGGGGATTG...TCGGACAAATGGTGCAGGAGGAGCACATGCTCCGAAGACTCCCCAATGCCTGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR CCA 90 bp | GAGAATCAGGCATTGGGGAGTCTTCGGAGCATGTGCTCCTCCTGCACCATTTGTACTTGGGAGGACATTTaGGCGGGCATTTTGGAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: ENQALGSLRSMCSSCTICTWEDI*AGILEG Trigger: GCCCTCCAAAATGCCCGCCCAAATGTCCTCCCAAGT...ACAAATGGTGCAGGAGGAGCACATGCTCCGAAGACTCCCCAATGCCTGATTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR CCA 90 bp | GAGAATCAGGCATTGGGGAGTCTTCGGAGCATGTGCTCCTCCTGCACCATTTGTTTTTGGAGGGCACTTTaGAGTCTGGCACTTGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: ENQALGSLRSMCSSCTICFWRAL*SLALGR Trigger: CCTCCCAAGTGCCAGACTCCAAAGTGCCCTCCAAAA...ACAAATGGTGCAGGAGGAGCACATGCTCCGAAGACTCCCCAATGCCTGATTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR GCA 90 bp | CAGAATGCAGAACATTTCACAGGAGATTTCAGCATTTCAGAGGACAGGGCCAGGCAGACTGCTGGCTACTaGCACAACAGCCACTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: QNAEHFTGDFSISEDRARQTAGY*HNSHCC Trigger: GCAGCAGTGGCTGTTGTGGCAGTAGCCAGCAGTCTG...CCTGGCCCTGTCCTCTGAAATGCTGAAATCTCCTGTGAAATGTTCTGCATTCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR CCA 90 bp | CAGAATGCAGAACATTTCACAGGAGATTTCAGCATTTCAGAGGACAGGGCCAGGGGGCACTTTGGAGTCTaGCACTTGGGAGGGCACTTG | + |
|
Preference number: 4 (lower is better) Translates to: QNAEHFTGDFSISEDRARGHFGV*HLGGHL Trigger: CAAGTGCCCTCCCAAGTGCCAGACTCCAAAGTGCCC...CCTGGCCCTGTCCTCTGAAATGCTGAAATCTCCTGTGAAATGTTCTGCATTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR CCA 90 bp | AACAGAATGCAGAACATTTCACAGGAGATTTCAGCATTTCAGAGGACAGGGCCATTGGAGTCTGGCACTTaGGAGGGCACTTGGGGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: NRMQNISQEISAFQRTGPLESGT*EGTWGC Trigger: GCACCCCCAAGTGCCCTCCCAAGTGCCAGACTCCAA...TGGCCCTGTCCTCTGAAATGCTGAAATCTCCTGTGAAATGTTCTGCATTCTGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR GCA 90 bp | AACAGAATGCAGAACATTTCACAGGAGATTTCAGCATTTCAGAGGACAGGGCCATGCCACAGCAGCCACTaGTGCCACCACTGCTACAAC | + |
|
Preference number: 4 (lower is better) Translates to: NRMQNISQEISAFQRTGPCHSSH*CHHCYN Trigger: GTTGTAGCAGTGGTGGCAGCAGTGGCTGCTGTGGCA...TGGCCCTGTCCTCTGAAATGCTGAAATCTCCTGTGAAATGTTCTGCATTCTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR CCA 90 bp | AGAATGCAGAACATTTCACAGGAGATTTCAGCATTTCAGAGGACAGGGCCAGGATTTGGGCGGGCATTTTaGAGGGCACTTTGGAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: RMQNISQEISAFQRTGPGFGRAF*RALWSL Trigger: CAGACTCCAAAGTGCCCTCCAAAATGCCCGCCCAAA...TCCTGGCCCTGTCCTCTGAAATGCTGAAATCTCCTGTGAAATGTTCTGCATTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR TCA 90 bp | ATTCTTAACAAATATGCAAAGGGACATTGTTATCACCTGAACAGAATGCAGAACGCAGCCTCCACCCCCTaGGCTGCAGCATCCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: ILNKYAKGHCYHLNRMQNAASTP*AAASSR Trigger: TCTGGAGGATGCTGCAGCTCAGGGGGTGGAGGCTGC...GTTCTGCATTCTGTTCAGGTGATAACAATGTCCCTTTGCATATTTGTTAAGAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS GCA 90 bp | CCCCAGACTGCTGGCTACTGCCACAACAGCCACTGCTGCCACCACTaGTTCCACAGCAGCCACTGCTGCCACCACTGCTGCCACAGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: PQTAGYCHNSHCCHH*FHSSHCCHHCCHSS Trigger: GCTGCTGTGGCAGCAGTGGTGGCAGCAGTGGCTGCTGTGGAAGCAGTGGTGGCAGCAGTGGCTGTTGTGGCAGTAGCCAGCAGTCTGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS GCA 90 bp | AGCAGCAATCCCCAGACTGCTGGCTACTGCCACAACAGCCACTGCTaGCACCACTGCTTCCACAGCAGCCACTGCTGCCACCACTGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SSNPQTAGYCHNSHC*HHCFHSSHCCHHCC Trigger: GCAGCAGTGGTGGCAGCAGTGGCTGCTGTGGAAGCAGTGGTGGCAGCAGTGGCTGTTGTGGCAGTAGCCAGCAGTCTGGGGATTGCTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR CAA 90 bp | GAGAATCAGGCATTGGGGAGTCTTCGGAGCATGTGCTCCTCCTGCACCATTTGTTTTGGAGTCTGGCACTaGGGAGGGCACTTGGGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: ENQALGSLRSMCSSCTICFGVWH*GGHLGV Trigger: CACCCCCAAGTGCCCTCCCAAGTGCCAGACTCCAAA...ACAAATGGTGCAGGAGGAGCACATGCTCCGAAGACTCCCCAATGCCTGATTCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS-3UTR CAA 90 bp | GAGAATCAGGCATTGGGGAGTCTTCGGAGCATGTGCTCCTCCTGCACCATTTGTCACTTGGGAGGACATTaGGGCGGGCATTTTGGAGGG | + |
|
Preference number: 5 (lower is better) Translates to: ENQALGSLRSMCSSCTICHLGGH*GGHFGG Trigger: CCCTCCAAAATGCCCGCCCAAATGTCCTCCCAAGTG...ACAAATGGTGCAGGAGGAGCACATGCTCCGAAGACTCCCCAATGCCTGATTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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| CDS TCA 72 bp | CCACTGCTGCCACCACTGCTACAACATCCAGAGCTGTaGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: PLLPPLLQHPEL*RWRRRDLRGLW Trigger: CCACAGACCCCGCAGATCTCTTCGTCGCCATCGTCACAGCTCTGGATGTTGTAGCAGTGGTGGCAGCAGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047153.4 |
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